These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9632#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 698 fasta sequence [CACCGGTTCACTTATGTCGAAGGTTGTTTGGTGAACCTGTATCATGTATACGTATTCAACAAACTTTAGAGACAATTATACGTAAAGATTTAGACCG-TTTCCAAAATAAATGGAACTTTCAACCACCTAATATTGTATTACAGAATAAAATTCGGAAACCACTTTCTGTACATC-AATTACATAGTGGAAATTTACAGACAAATTCTACAAA-TGAATTCATTTTAGAACCTGTTCAATCACCTCCAA-GTTTCTATATAAAATCTCCACGAAAATTAAAAGCATTTCGACGTCTTCCAATGTCAGTAGCTCAAAAAAACACGTATGGAACTCTGCAAAAAGTCTACAAATAGTGA-ACTTAAAGATCTCACTTATTCATTTAATTCATCATACAACCTATCTAATACTGATACT-TTATTAAATGAT-AATCAAAAATCCGAAATAAACTTTCCTTTAACGACAGAGTCGACTGTCACAATAACACCGAATCAACCACCGCCAAC-ATCATCATCTACACCATACAAAGTCAACAGCATATCACAAGTTACTGAAAAGTTATCAGAAATACCAACGACAACATTACCTGTGAATCCTATAATTATCCGTTCAAATAATAGTAGCAATAATATAATGTTACCATCTGGTTCGAATCCCTCTTCTCAACATTCAATTAAATTGATAAAATCTGATCGATTAAGTTT] [+] EMBL CD153051 [CACCGGTTCACTTATGTCGAAGGTTGTTTGGTGAACCTGTATCATGTATACGTATTCAACAAACTTTAGAGACAATTATACGTAAAGATTTAGACCG TTTCCAAAATAAATGGAACTTTCAACCACCTAATATTGTATTACAGAATAAAATTCGGAAACCACTTTCTGTACATC AATTACATAGTGGAAATTTACAGACAAATTCTACAAA TGAATTCATTTTAGAACCTGTTCAATCACCTCCAA GTTTCTATATAAAATCTCCACGAAAATTAAAAGCATTTCGACGTCTTCCAATGTCAGTAGCTCAAAAAAACACGTATGGAACTCTGCAAAAAGTCTACAAATAGTGA ACTTAAAGATCTCACTTATTCATTTAATTCATCATACAACCTATCTAATACTGATACT TTATTAAATGAT AATCAAAAATCCGAAATAAACTTTCCTTTAACGACAGTGTCGACTGTCACAATAACACCGAATCAACCACCGCCAAC ATCATCATCTACACCATACAAAGTCAACAGCATATCACAAGTTACTGAANAGNTATCAAAAAT ] [+] EMBL CD153244 [CACCGGTTCACTTATGTCGAAGGTTGTTTGGTGAACCTGTATCATGTATACGTATTCAACAAACTTTAGAGACAATTATACGTAAAGATTTAGACCG TTTCCAAAATAAATGGAACTTTCAACCACCTAATATTGTATTACAGAATAAAATTCGGAAACCACTTTCTGTACATC AATTACATAGTGGAAATTTACAGACAAATTCTACAAA TGAATTCATTTTAGAACCTGTTCAATCACCTCCAA GTTTCTATATAAAATCTCCACGAAAATTAAAAGCATTTCGACGTCTTCCAATGTCAGTAGCTCAAAAAAACACGTATGGAACTCTGCAAAAAGTCTACAAATAGTGA ACTTAAAGATCTCACTTATTCATTTAATTCATCATACAACCTATCTAATACTGATACT TTATTAAATGAT AATCAAAAATCCGAAATAAACTTTCCTTTAACGACAGAGTCGACTGTCACAATAACACCGAATCAACCACCGCCAAC ATCATCATCTACACCATACAAAGTCAACAGCATATCACAAGTTACTGGAAAGTTATCAGAA ] [-] EMBL CD065672 [ ATACGTAAAGATTTAGACCG TTTCCAAAATAAATGGAACTTTCAACCACCTAATATTGTATTACAGAATAAAATTCGGAAACCACTTTCTGTACATC AATTACATAGTGGAAATTTACAGACAAATTCTACAAA TGAATTCATTTTAGAACCTGTTCAATCACCTCCAA GTTTCTATATAAAATCTCCACGACAATTAAAAGCATTTCGACGTCTTCCAATGTCAGTAGCTCAAAAAAACACGTATGGAACTCTGCAAAAAGTCTACAAATAGTGACACTTAAAGATCTCACTTATTCATTTAATTCATCATACAACCTATCTAATACTGATACTCTTATTAAATGAT AATCAAAAATCCGAAATAAACTTTCCTTTAACGACAGAGTCGACTGTCAC ATAACACCGAATCAACCACCGCCAACTATCATCt ] [+] EMBL CD065768 [ ATACGTAAAGATTTAGACCG TTTCCAAAATAAATGGAACTTTCAACCACCTAATATTGTATTACAGAATAAAATTCGGAAACCACTTTCTGTACATC AATTACATAGTGGAAATTTACAGACAAATTCTACAAA TGAATTCATTTTAGAACCTGTTCAATCACCTCCAA GTTTCTATATAAAATCTCCACGAAAATTAAAAGCATTTCGACGTCTTCCAATGTCAGTAGCTC AAAAAACACGTATGGAACTCTGCAAAAAGTCTACAAATAGTGA ACTTAAAGATCTCACTTATTCATTTAATTCATCATACAACCTATCTAATACTGATACT TTATTAAATGAT AATCAAAAATCCGAAATAAACTTTCCTTTAACGACAGAGTCGACTGTCACAATAACACCGAATCAACCACCGCCAAC ATCATCATC ] [-] EMBL CD167456 [ ATACGTAAAGATTTAGACCGTTTTCCAAAATAAATGGAACTTGCAACCACCTGATATTGTATTACAGAATAAAATTCGGAAACCACTTTCTGTACATCGAGTTACATAGTGGAAATTTACAGACATATTCTACAAAGTGAATTCATTTTAGAACCTGTTCGATCACCTCCAAGGTTTCTATATAAAATCGCCACGAAAATTAAAAGCATTTCGACGTCTTCCAATGTCAGTAGCTCAAATATACACGTATGGAACTCTGCAAAAAGTCTACAAATAGTGA ACTTAAAGATCTCACTTATTCATTTAATTCATCATACAACCTATCTAATACTGATACT TTATTAAATGAT ] [+] EMBL CD139627 [ AACTTTCAACCACCTAATATTGTATTACAGAATAAAATTCGGAAACCACTTTCTGTACATC AATTACATAGTGGAAATTTACAGACAAATTCTACAAA TGAATTCATTTTAGAACCTGTTCAATCACCTCCAA GTTTCTATATAAAATCTCCACGAAAATTAAAAGCATTTCGACGTCTTCCAATGTCAGTAGCTC AAAAAACACGTATGGAACTCTGCAAAAAGTCTACAAATAGTGA ACTTAAAGATCTCACTTATTCATTTAATTCATCATACAACCTATCTAATACTGATACT TTATT AATGATAAATC AAAAT CGAAAATAACTTTCCTTT ACGACAGAGTCGACT ] [+] EMBL CD139813 [ AACTTTCAACCACCTAATATTGTATTACAGAATAAAATTCGGAAACCACTTTCTGTACATC AATTACATAGTGGAAATTTACAGACAAATTCTACAAA TGAATTCATTTTAGAACCTGTTCAATCACCTCCAA GTTTCTATATAAAATCTCCACGAAAATTAAAAGCATTTCGACGTCTTCCAATGTCAGTAGCTC AAAAAACACGTATGGAACTCTGCAAAAAGTCTACAAATAGTGA ACTTAAAGATCTCACTTATTCATTTAATTCATCATACAACCTATCTAATACTGATACT TTATTAAATGATAAATCAAA ] [-] EMBL CD117056 [ ATTAAAAGCATTTCGACGTCTTCCAATGTCAGTAGCTC AAAAAACACGTATGGAACTCTGCAAAAAGTCTACAAATAGTGA ACTTAAAGATCTCACTTATTCATTTAATTCATCATACAACCTATCTAATACTGATACT TTATTAAATGAT AATCAAAAATCCGAAATAAACTTTCCTTTAACGACAGAGTCGACTGT ] [+] EMBL CD093542 [ ACACGTATGGAACTCTGCAAAAAGTCTACAAATAGTGA ACTTAAAGATCTCACTTATTCATTTAATTCATCATACAACCTATCTAATACTGATACT TTATTAAGTGAT AATCAAAAATCCGAAATAAACTTTCCTTTAACGACAGAGTCGACTGTCACAATAACACCGAATCAACCACCGCCAAC ATCATCATCTACACCATACAAAGTCAACAGCATATCACAAGTTACTGAAAAGTTATCAGAAATACCAACGACAACATTACCTGTGAATCCTATAATTATCCGTTCAAATAATAGTAGCAATAATATAATGTTACCATCTGGTTCGAATCCCTCTTCTCAACATTCAATTAAATTGATAAAATCTGATCGATTAAGTTT] [+] EMBL CD078089 [ cggCACG A GGAACTCTGCAAAAAGTCTACAAATAGTGA ACTTAAAGATCTCACTTATTCATTTAATTCATCATACAACCTATCTAATACTGATACT TTATTAAATGAT AATCAAAAATCCGAAATAAACTTTCCTTTAACGACAGAGTCGACTGTCACAATAACACCGAATCAACCACCGCCAAC ATCATCATCTACACCATACAAAGTCAACAGCATATCACAAGTTACTGAAAAGTTATCAGAAATACCAACGACAACATTACCTGTGAATCCTATAATTATCCGTTCAAATAATAGTAGCAATAATATAATGTTACCATCTGGNTCGAATCCC ] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||