cluster # 9635

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Schistosoma mansoni
cluster # 9635 cluster # 9635 Sequences # 10 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9635#0 length = 460 sequences # 7
consensus_9635#1 length = 445 sequences # 1

consensus_9635#2 length = 295 sequences # 1
consensus_9635#3 length = 201 sequences # 1

consensusID : consensus_9635#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 460
fasta sequence

                              [TTTGCTTCCAATTTTATCATTAATCAAGTATAGTTAGATTGTATCGGTGAATCCTCTCCCTCTCTCTCTCTCACTCTTCATGTATATTTATGTATATCTGTAGTTGTGCTTATTAGTTGCTACATGATTTATACATAATACTTTCGAATGGTCTTGCTGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCT-GCTG-CACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTTTGTTTTCTTCAAGAGTTCACAAAAGATCTGTCCAATACAACAATCGATCATTTTTGATCTTTACACGCACATATACCTCTTTTATTGATATCATCAATGGTGGTAAGCATTGTCACTAATCGTCTCCTAGTA]

[+] EMBL CD153536             [TTTGCTTCCAATTTTATCATTAATCAAGTATAGTTAGATTGTATCGGTGAATCCTCTCCCTCTCTCTCTCTCACTCTTCATGTATATTTATGTATATCTGTAGTTGTGCTTATTAGTTGCTACATGATTTATACATAATACTTTCGAATGGTCTTGCTGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCT GCTG CACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTTTGTTTTCTTCAAGAGTTCACAAAAGATCTGTCCAATACAACAATCGATCATTTTTGATCTTTACACGCACATATACCTCTTTTATTGATATCATCACTGGTGGTAAGCATTGTCACTAATCGT         ]
[+] EMBL CD153514             [TTTGCTTGCAATTTTATCATTAATCAAGTATAGTTAGATTGTATCGGTGAATCCTCTCCCTCTCTCTCTCTCACTCTTCATGTATATTTATGTATATCTGTAGTTGTGCTTATTAGTTGCTACATGATTTATACATAATACTTTCGAATGGTCTTGCTGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCT GCTG CACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTGTGTTTTCTTCAAGAGTTCACAAAAGATCTGTCCAATACAACAATCGGTCATTTTTGATCTTTACACGCACATATACCTCTTTTATTGATATCATCAATGGTGGTAAGCATTGTCACTAATCG          ]
[+] EMBL CD153512             [TTTGCTTCCAATTTTATCATTAATCAAGTATCGTTAGATTGTATCGGTGAATCCTCTCCCTCTCTCTCTCTCACTCTTCATGTATATTTATGTATATCTGTAGTTGTGCTTATTAGTTGCTACATGATTTATACATAATACTTTCGAATGGTCTTGCTGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCT GCTG CACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTTTGTTTTCTTCAAGAGTTCACAAAAGATCTGTCCAATACAACAATCGATCATTTTTGATCTTTACACGCACATATACCTCTTTTATTGATATCATCAATGGTGGGTAGCATTGTCAC                ]
[+] EMBL CD153563             [TTTGCTTCCAATTTTATCATTAATCAAGTATCGTTAGATTGTATCGGTGAATCCTCTCCCTCTCTCTCTCTCACTCTTCATGTATATTTATGTATATCTGTAGTTGTGCTTATTAGTTGCTACATGATTTATACATAATACTTTCGAATGGTCTTGCTGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCCCTTTTTTCT GCTG CACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTGTGTTTTCTTCAAGAGTTCACAAAAGATCTGTCCAATACAACAATCGATCATTTTTGATCTTTACACGCACATATACCTCTTTTATTGATATCATCAATGGTGGTAAG                         ]
[+] EMBL CD153504             [                                                                                                                                   TACATCATAGTTTCGAATGGTCTAGCTGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCT GCTG CACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTTTGTTTTCTTCAAGAGTTCACAAAAGATCTGTCCAATACAACAATCGATCATTTTTGATCTTTACACGCACATATACCTCTTTTATTGATATCATCAATGGTGGTAAGCATTG                    ]
[+] EMBL AW171923             [                                                                                                                                    ACATAATACTTTCGAATGGTCTTGCTGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCT GCTGACACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATG                                                                                                                                                                                             ]
[+] EMBL CD153498             [                                                                                                                                                                  CTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCTCGCAG CGCATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTTAGTATTCTTCAAGAGTTCACAAAAGATCTGTCCAATACAACAATCGATCATTTTTGATCTTTACACGCACATATACCTCTTTTATTGATATCATCAATGGTGGTCAGCATTGTCACTAATCGTCTCCTAGTA]




>consensus_9635#0
TTTGCTTCCAATTTTATCATTAATCAAGTATAGTTAGATTGTATCGGTGAATCCTCTCCC
TCTCTCTCTCTCACTCTTCATGTATATTTATGTATATCTGTAGTTGTGCTTATTAGTTGC
TACATGATTTATACATAATACTTTCGAATGGTCTTGCTGCATCTTGTTTTCTTCTTCTTC
TTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCTGCTGCACATTTTAATTTCTATTGTAAC
CAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTA
TACAATAAAATGAGGGTTCTTATATTTTTGTTTTCTTCAAGAGTTCACAAAAGATCTGTC
CAATACAACAATCGATCATTTTTGATCTTTACACGCACATATACCTCTTTTATTGATATC
ATCAATGGTGGTAAGCATTGTCACTAATCGTCTCCTAGTA

consensusID : consensus_9635#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 445
fasta sequence

                              [TGTACTTCTGATTCTCTCATTAATCATCTATAACCGGTCAGTGATGTCCATTGATCTCCGTGGTCGCACGTTTACGCTTCCATTGTCGTGTCATGTATTTCTGTAGTGAGGTCCTATTAGGATTCACCAGGACTGTTTCTTACCAGCTTTCACATTGGACAAGCCGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCTGCTGCACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTTTGTTTTCTTCAAGAGTTCACAAAAGATCTGTCCAATACAACAATCGATCATTTTTGATCTTTACACGCACATATACCTCTTTTATTGATATCATCAATGGTGGTAAGCAT]

[+] EMBL CD153554             [TGTACTTCTGATTCTCTCATTAATCATCTATAACCGGTCAGTGATGTCCATTGATCTCCGTGGTCGCACGTTTACGCTTCCATTGTCGTGTCATGTATTTCTGTAGTGAGGTCCTATTAGGATTCACCAGGACTGTTTCTTACCAGCTTTCACATTGGACAAGCCGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCTGCTGCACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTTTGTTTTCTTCAAGAGTTCACAAAAGATCTGTCCAATACAACAATCGATCATTTTTGATCTTTACACGCACATATACCTCTTTTATTGATATCATCAATGGTGGTAAGCAT]




>consensus_9635#1
TGTACTTCTGATTCTCTCATTAATCATCTATAACCGGTCAGTGATGTCCATTGATCTCCG
TGGTCGCACGTTTACGCTTCCATTGTCGTGTCATGTATTTCTGTAGTGAGGTCCTATTAG
GATTCACCAGGACTGTTTCTTACCAGCTTTCACATTGGACAAGCCGCATCTTGTTTTCTT
CTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCTGCTGCACATTTTAATTTCTA
TTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTT
CACCGTATACAATAAAATGAGGGTTCTTATATTTTTGTTTTCTTCAAGAGTTCACAAAAG
ATCTGTCCAATACAACAATCGATCATTTTTGATCTTTACACGCACATATACCTCTTTTAT
TGATATCATCAATGGTGGTAAGCAT

consensusID : consensus_9635#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence

                              [ATTAGTTGCTACATGATTTATACATAATACTCTGGAAATGGTCTTGCTGCATCTTGTTTTTCTTCTTCTTCAATTTTNCTCTGTTTTTTTTNCTCTTTTTNCTGCTGCACATTTTAATTTCTATTGGTAACCAATACATAAACTAAAGTGTATCCATCTATGTATTTATATCTTAGCTNCTTTNCACCGTATACAATAAAATGAGGGTTCTTATATTTTGGGTTTCCTCCAAAAGTTCACAAAANATCTGTCCAATAACAACAATCGATCATTTTNGAATCTTTACACGCACATN]

[+] EMBL AA559736             [ATTAGTTGCTACATGATTTATACATAATACTCTGGAAATGGTCTTGCTGCATCTTGTTTTTCTTCTTCTTCAATTTTNCTCTGTTTTTTTTNCTCTTTTTNCTGCTGCACATTTTAATTTCTATTGGTAACCAATACATAAACTAAAGTGTATCCATCTATGTATTTATATCTTAGCTNCTTTNCACCGTATACAATAAAATGAGGGTTCTTATATTTTGGGTTTCCTCCAAAAGTTCACAAAANATCTGTCCAATAACAACAATCGATCATTTTNGAATCTTTACACGCACATN]




>consensus_9635#2
ATTAGTTGCTACATGATTTATACATAATACTCTGGAAATGGTCTTGCTGCATCTTGTTTT
TCTTCTTCTTCAATTTTNCTCTGTTTTTTTTNCTCTTTTTNCTGCTGCACATTTTAATTT
CTATTGGTAACCAATACATAAACTAAAGTGTATCCATCTATGTATTTATATCTTAGCTNC
TTTNCACCGTATACAATAAAATGAGGGTTCTTATATTTTGGGTTTCCTCCAAAAGTTCAC
AAAANATCTGTCCAATAACAACAATCGATCATTTTNGAATCTTTACACGCACATN

consensusID : consensus_9635#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence

                              [CGACGCCAGAAATTCGGCACGAGGCTGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCTGCTGCACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTCTTATATTTTTGTTTC]

[+] EMBL CD077743             [CGACGCCAGAAATTCGGCACGAGGCTGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCTGCTGCACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTCTTATATTTTTGTTTC]




>consensus_9635#3
CGACGCCAGAAATTCGGCACGAGGCTGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCT
CTGTTTTTTTCTCTTTTTTCTGCTGCACATTTTAATTTCTATTGTAACCAATACATAAAC
TAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATG
AGGGTCTTATATTTTTGTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9635#1      TGTACTTCTGATTCTCTCATTAATCATCTATAACCGGTCAGTGATGTCCATTGATCTCCG 60
consensus_9635#3      ------------------------------------------------------------
consensus_9635#0      ---TTTGCTTCCAATTTTATCATTAATCAAGTATAGTTAGATTGTATCGGTGAATCCTCT 57
consensus_9635#2      ------------------------------------------------------------
                                                                                  

consensus_9635#1      TGGTCGCACGTTTACGCTTCCATTGTCGTGTCATGTATTTCTGTAGTGAGGTCCTATTAG 120
consensus_9635#3      ------------------------------------------------------------
consensus_9635#0      CCCTCTCTCTCTCTCACTCTTCATGTATATTTATGTATATCTGTAGTT--GTGCTTATTA 115
consensus_9635#2      --------------------------------------------------------ATTA 4
                                                                                  

consensus_9635#1      GATTCACCAGGACTGTTTCTTACCAGCTTTCACATTGGAC---AAGCCGCATCTTGTTTT 177
consensus_9635#3      ----------------------CGACGCCAGAAATTCGGCACGAGGCTGCATCTTGTTTT 38
consensus_9635#0      GTTGCTACATGATTTATACATAATACTTTCGAA--TGGTC---TTGCTGCATCTTGTTTT 170
consensus_9635#2      GTTGCTACATGATTTATACATAATACTCTGGAAA-TGGTC---TTGCTGCATCTTGTTTT 60
                                              *      *   * * *     ** ************

consensus_9635#1      CTTCTTCTTCTTCAATTTTTCTCTGTTTTTTT--CTCTTTTTTCTGCTGCACATTTTAAT 235
consensus_9635#3      CTTCTTCTTCTTCAATTTTTCTCTGTTTTTTT--CTCTTTTTTCTGCTGCACATTTTAAT 96
consensus_9635#0      CTTCTTCTTCTTCAATTTTTCTCTGTTTTTTT--CTCTTTTTTCTGCTGCACATTTTAAT 228
consensus_9635#2      --TCTTCTTCTTCAATTTTNCTCTGTTTTTTTTNCTCTTTTTNCTGCTGCACATTTTAAT 118
                        ***************** ************  ******** *****************

consensus_9635#1      TTCTATTG-TAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCT 294
consensus_9635#3      TTCTATTG-TAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCT 155
consensus_9635#0      TTCTATTG-TAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCT 287
consensus_9635#2      TTCTATTGGTAACCAATACATAAACTAAAGTGTATCCATCTATGTATTTATATCTTAGCT 178
                      ******** ************************** ************************

consensus_9635#1      TCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTTTG-TTTTCTTCAAGAGTTC 353
consensus_9635#3      TCTTTTCACCGTATACAATAAAATGAGGGT-CTTATATTTTTG-TTTC------------ 201
consensus_9635#0      TCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTTTG-TTTTCTTCAAGAGTTC 346
consensus_9635#2      NCTTTNCACCGTATACAATAAAATGAGGGTTCTTATATTTTGGGTTTCCTCCAAAAGTTC 238
                       **** ************************ ********** * ***             

consensus_9635#1      ACAAAAGATCTGTCCAATA-CAACAATCGATCATTTTTGA-TCTTTACACGCACATATAC 411
consensus_9635#3      ------------------------------------------------------------
consensus_9635#0      ACAAAAGATCTGTCCAATA-CAACAATCGATCATTTTTGA-TCTTTACACGCACATATAC 404
consensus_9635#2      ACAAAANATCTGTCCAATAACAACAATCGATCATTTTNGAATCTTTACACGCACATN--- 295
                                                                                  

consensus_9635#1      CTCTTTTATTGATATCATCAATGGTGGTAAGCAT---------------------- 445
consensus_9635#3      --------------------------------------------------------
consensus_9635#0      CTCTTTTATTGATATCATCAATGGTGGTAAGCATTGTCACTAATCGTCTCCTAGTA 460
consensus_9635#2      --------------------------------------------------------