cluster # 9643

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9643 cluster # 9643 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9643#0 length = 978 sequences # 8

consensus_9643#1 length = 389 sequences # 2

consensusID : consensus_9643#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 978
fasta sequence

                              [TCTATTCGTTTTAGGGTTTTCGTGTAGCATCAACTCCATATTTTAAAAATTCAAATAGTTGTCTTGTTAAGTGAGCAGCATTCGGATCTACAAGATAGTCTTGAAGTCTAGCCAATAGAATACATGCAAACTTCAGTTTTTCAAAGAAATCAACAGCACATTTTTTCACAGGTTCATCCACCTCAGTGGTTAAAGAAGATGTTTGATTCACATTAACACTTGAAATTCGACTTTTTGATTTACTCGATGTAGCAACAGATGCTGATGATTTAGTGAACTGTCGACTTGTTCTGCTTTTTAAAATTTTGTAATTTGATTCAATGTCATCAAAGCAGAGATTTAGAAGTGCAACTTCTAAGTCAATCCATTCACGATTGATTTGTGATTCACTATATACACTGTCCTCTTTGATAACCGTTGGTGGAAGTTGATATCCACCTGAACTTGTTTGCAACGGTATCCTTAGATTTGGTTCAGATGGAGCCCTGGAGATTAGCATGGAATCATTTACATCTTGATTATATGAATCATGGTCTAGAGCTCCAGCTCTCAATAAAAGATTGACAAGTGTTTGAGCAGGACAAGTTAAAACTTGAAATAAATGTATTTCGTTACGTCTTGGACGTCCATTGTCCATTGAACCAGCTTTGATAGTGAATGTGAGTAGATTGTTTACTGGACACACATCTGGAGGAGTTATTCGATAGCGAGGATAAAGTATACGACCAATTCGGAAACGTTCAACTTCAGCATTTCCATTACGTGGATCACTTAGAATGAGATATGGTTCACCATCATTGTCATCGATTGACATATTAAAACTACGTACATATGTATAACATCCTTCCAACAGTAAGTCGACAGCAGTTTGTGTGTTTGGTAATACATTTGTAGGAGTAACCTCAAATGTTCGCAGGTGTTGTACTTTATACGTTTTTAAATGTCTGGAATTGTTTCTATTTCCATTCATTTTCTTAT]

[-] EMBL CD196455             [TCTATTCGTTTTAGGGTTTTCGTGTAGCATCAACTCCATATTTTAAAAATTCAAATAGTTGTCTTGTTAAGTGAGCAGCATTCGGATCTACAAGATAGTCTTGAAGTCTAGCCAATAGAATACATGCAAACTTCAGTTTTTCAAAGAAATCAACAGCACATTTTTTCACAGGTTCATCCACCTCAGTGGTTAAAGAAGATGTTTGATTCACATTAACACTTGAAATTCGACTTTTTGATTTACTCGATGTAGCAACAGATGCTGATGATTTAGTGAACTGTCGACTTGTTCTGCTTTTTAAAATTTTGTAATTTGATTCAATGTCATCAAAGCAGAGATTTAGAAGTGCAACTTCTAAGTCAATCCATTCACGATTGATTTGTGATTCACTATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD168937             [                                                                                                                                                                                                             ATTCACATTAACACTTGAAATTCGACTTTTTGATTTACTCGATGTAGCAACAGATGCTGATGATTTAGTGAACTGTCGACTTGTTCTGCTTTTTAAAATTTTGTAATTTGATTCAATGTCATCAAAGCAGAGATTTAGAAGTGCAACTTCTAAGTCAATCCATTCACGATTGATTTGTGATTCACTATATACACTGTCCTCTTTGATAACCGTTGGTGGAAGTTGATATCCACCTGAACTTGTTTGCAACGGTATCCTTAGATTTGGTTCAGATGGAGCCCTGGAGATTAGCATGGAATCATTTACATCTTGATTATATGAATCATGGTCTAGAGCTCCAGCTCTCAATAAAAGATTGACAAGTGTTTGAGCAGGACAAGTTAAAACTTGAAATAAATGTATTTCGTTACGTCTTGGACGTCCATTGTCCATTGAACCAGCTTTGATAGTGAATGTGAGTAGATTGTTTACTGGACACACATCTGGAGGAGTTATTCGATAGCGAGGATAAAGTATACGACCAATTCGGAAACGTTCAACTTCAGCATTTCCATTACGTGGATCACTTAGAATGAGATATGGTTCACCATCAT                                                                                                                                                                                    ]
[-] EMBL BF936068             [                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTTGTTTGCAACGGTATCCTTAGATTTGGTTCAGATGGAGCCCTGGAGATTAGCATGGAATCATTTACATCTTGATTATATGAATCATGGTCTAGAGCTCCAGCTCTCAATAAAAGATTGACAAGTGTTTGAGCAGGACAAGTTAAAACTTGAAATAAATGTATTTCGTTACGTCTTGGACGTCCATTGTCCATTGAACCAGCTTTGATAGTGAATGTGAGTAGATTGTTTACTGGACACACATCTGGAGGAGTTATTCGATAGCGAGGATAAAGTATACGACCAATTCGGAAACGTTCAACTTCAGCATTTCCATTACGTGGATCACTTAGAATGAGATATGGTTCACCATCATTGTCATCGATTGACATATTAAAACTACGTACATATGTATAACATCCTTCCAACAGTAAGTCGACAGCAGTTTGTGTGTTTGGTAATACATTTGTAGGAGTAACCTCAAATGTTCGCAGGTGTTGTACTTTATACGTTTTTAAATGTCTGGAATTGTTTCTATTTCCA             ]
[-] EMBL AI975477             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AATCATGGTCTAGAGCTCCAGCTCTCAATAAAAGATTGACAAGTGTTTGAGCAGGACAAGTTAAAACTTGAAATAAATGTATTTCGTTACGTCTTGGACGTCCATTGTCCATTGAACCAGCTTTGATAGTGAATGTGAGTAGATTGTTTACTGGACACACATCTGGAGGAGTTATTCGATAGCGAGGATAAAGTATACGACCAATTCGGAAACGTTCAACTTCAGCATTTCCATTACGTGGATCACTTAGAATGAGATATGGTTCACCATCATTGTCATCGATTGACATATTAAAACTACGTACATATGTATAACATCCTTCCAACAGTAAGTCGACAGCAGTTTGTGTGTTTGGTAATACATTTGTAGGAGTAACCTCAAATGTTCGCAGGTGTTGTACTTTATACGTTTTTAAATGTCTGGAATTGTTTCTATTTCCA             ]
[-] EMBL AA958289             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CAATAAAAGA TGACAAGTGTTTGAGCAGGACAAGTTAAAACTTGAAATAAATGTATTTCGTTACGTCTTGGACGTCCATTGTCCATTGAACCAGCTTTGATAGTGAATGTGAGTAGATTGTTTACTGGACACACATCTGGAGGAGTTATTCGATAGCGAGGATAAAGTATACGACCAATTCGGAAACGTTCAACTTCAGCATTTCCATTACGTGGATCACTTAGAATGAGATATGGTTCACCATCATTGTCATCGATTGACATATTAAAACTACGTACATATGTATAACATCCTTCCAACAGTAAGTCGACAGCAGTTTGTGTGTTTGGTAATACATTTGTAGGAGTAACCTCAAATGTTCGCAGGTGTTGTACTTTATACGTTTTTAAATGTCTGGAATTGTTTCTATTTCCATTCATTTTCTTAT]
[-] EMBL AA958306             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CAATAAAAGA TGACAAGTGTTTGAGCAGGACAAGTTAAAACTTGAAATAAATGTATTTCGTTACGTCTTGGACGTCCATTGTCCATTGAACCAGCTTTGATAGTGAATGTGAGTAGATTGTTTACTGGACACACATCTGGAGGAGTTATTCGATAGCGAGGATAAAGTATACGACCAATTCGGAAACGTTCAACTTCAGCATTTCCATTACGTGGATCACTTAGAATGAGATATGGTTCACCATCATTGTCATCGATTGACATATTAAAACTACGTACATATGTATAACATCCTTCCAACAGTAAGTCGACAGCAGTTTGTGTGTTTGGTAATACATTTGTAGGAGTAACCTCAAATGTTCGCAGGTGTTGTACTTTATACGTTTTTAAATGTCTGGAATTGTTTCTATTTCCATTCATTTTCTTAT]
[-] EMBL AA958286             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AATAAAAGATTGACAAGTGTTTGAGCAGGACAAGTTAAAACTTGGAATAAATGTATTTCGTTACGTCTTGGACGTCCATTGTCCATTGAACCAGCTTTGATAGTGAATGTGAGTAGATTGTTTACTGGACACACATCTGGAGGAGTTATTCGATAGCGAGGATAAAGTATACGACCAATTCGGAAACGTTCAACTTCAGCATTTCCATTACGTGGATCACTTAGAATGAGATATGGTTCACCATCATTGTCATCGATTGACATATTAAAACTACGTACATATGTATAACATCCTTCCAACAGTAAGTCGACAGCAGTTTGTGTGTTTGGTAATACATTTGTAGGAGTAACCTCAAATGTTCGCAGGTGTTGTACTTTATACGTTTTTAAATGTCTGGAATTGTTTCTATTTCCATTCATTTTCTTAT]
[-] EMBL AA960679             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TCACTTAGAATGAGATATGGTTCACCATCATTGTCATCGATTGACATATTAAAACTACGTACATATGTATAACATCCTTCCAACAGTAAGTCGACAGCAGTTTGTGTGTTTGGTAATACATTTGTAGGAGTAACCTCAAATGTTCGCAGGTGTTGTACTTTATACGTTTTTAAATGTCTGGAATTGTTTCTATTTCCATTCATTTTCTTAT]




>consensus_9643#0
TCTATTCGTTTTAGGGTTTTCGTGTAGCATCAACTCCATATTTTAAAAATTCAAATAGTT
GTCTTGTTAAGTGAGCAGCATTCGGATCTACAAGATAGTCTTGAAGTCTAGCCAATAGAA
TACATGCAAACTTCAGTTTTTCAAAGAAATCAACAGCACATTTTTTCACAGGTTCATCCA
CCTCAGTGGTTAAAGAAGATGTTTGATTCACATTAACACTTGAAATTCGACTTTTTGATT
TACTCGATGTAGCAACAGATGCTGATGATTTAGTGAACTGTCGACTTGTTCTGCTTTTTA
AAATTTTGTAATTTGATTCAATGTCATCAAAGCAGAGATTTAGAAGTGCAACTTCTAAGT
CAATCCATTCACGATTGATTTGTGATTCACTATATACACTGTCCTCTTTGATAACCGTTG
GTGGAAGTTGATATCCACCTGAACTTGTTTGCAACGGTATCCTTAGATTTGGTTCAGATG
GAGCCCTGGAGATTAGCATGGAATCATTTACATCTTGATTATATGAATCATGGTCTAGAG
CTCCAGCTCTCAATAAAAGATTGACAAGTGTTTGAGCAGGACAAGTTAAAACTTGAAATA
AATGTATTTCGTTACGTCTTGGACGTCCATTGTCCATTGAACCAGCTTTGATAGTGAATG
TGAGTAGATTGTTTACTGGACACACATCTGGAGGAGTTATTCGATAGCGAGGATAAAGTA
TACGACCAATTCGGAAACGTTCAACTTCAGCATTTCCATTACGTGGATCACTTAGAATGA
GATATGGTTCACCATCATTGTCATCGATTGACATATTAAAACTACGTACATATGTATAAC
ATCCTTCCAACAGTAAGTCGACAGCAGTTTGTGTGTTTGGTAATACATTTGTAGGAGTAA
CCTCAAATGTTCGCAGGTGTTGTACTTTATACGTTTTTAAATGTCTGGAATTGTTTCTAT
TTCCATTCATTTTCTTAT

consensusID : consensus_9643#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 389
fasta sequence

                              [TAACTCGACACTTCAGTGGCTATTCATATCTCTATAGTATTTTAATATTGATCAAAGGTGGATATGGTCTGTTTCTTTATCAAGTTAATAAAGATACCAGTGAATCTGATGATGAAAAGCACAAAAGTATTTTGAGATGATGAAGAATATTTGTAGCTAGAAATTGGTTCTCCAATTTTGCACAACATTATTATTTAATATACTTAATTAAATTGATGAACTTAGTAAGACATCAGTAAAATATAATTAGTAAAATATGGGAATAATTGTTACCAACAACTTTTTAACTAGTTGTCTTACTGATTTGTGATTCACTATATACACTGTCCTCTTTGATAACCGTTGGTGGAAGTTGATATCCACCTGAACTTGTTTGCAACGGTATCCTT]

[+] EMBL CD159693             [TAACTCGACACTTCAGTGGCTATTCATATCTCTATAGTATTTTAATATTGATCAAAGGTGGATATGGTCTGTTTCTTTATCAAGTTAATAAAGATACCAGTGAATCTGATGATGAAAAGCACAAAAGTATTTTGAGATGATGAAGAATATTTGTAGCTAGAAATTGGTTCTCCAATTTTGCACAACATTATTATTTAATATACTTAATTAAATTGATGAACTTAGTAAGACATCAGTAAAATATAATTAGTAAAATATGGGAATAATTGTTACCAACAACTTTTTAACTAGTTGTCTTACTGATTTGTGATTCACTATATACACTGTCCTCTTTGATAACCGTTGGTGGAAGTTGATATCCACCTGAACTTGTTTGCAACGGTATCCT ]
[-] EMBL CD159562             [                 gaCTATTCATATCTCTATAGTATTTTAATATTGATCAAAGGTGGATATGGTCTGTTTCTTTATCAAGTTAATAAAGATACCAGTGAATCTGATGATGAAAAGCACAAAAGTATTTTGAGATGATGAAGAATATTTGTAGCTAGAAATTGGTTCTCCAATTTTGCACAACATTATTATTTAATATACTTAATTAAATTGATGAACTTAGTAAGACATCAGTAAAATATAATTAGTAAAATATGGGAATAATTGTTACCAACAACTTTTTAACTAGTTGTCTTACTGATTTGTGATTCACTATATACACTGTCCTCTTTGATAACCGTTGGTGGAAGTTGATATCCACCTGAACTTGTTTGCAACGGTATCCTT]




>consensus_9643#1
TAACTCGACACTTCAGTGGCTATTCATATCTCTATAGTATTTTAATATTGATCAAAGGTG
GATATGGTCTGTTTCTTTATCAAGTTAATAAAGATACCAGTGAATCTGATGATGAAAAGC
ACAAAAGTATTTTGAGATGATGAAGAATATTTGTAGCTAGAAATTGGTTCTCCAATTTTG
CACAACATTATTATTTAATATACTTAATTAAATTGATGAACTTAGTAAGACATCAGTAAA
ATATAATTAGTAAAATATGGGAATAATTGTTACCAACAACTTTTTAACTAGTTGTCTTAC
TGATTTGTGATTCACTATATACACTGTCCTCTTTGATAACCGTTGGTGGAAGTTGATATC
CACCTGAACTTGTTTGCAACGGTATCCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9643#0      TCTATTCGTTTTAGGGTTTTCGTGTAGCATCAACTCCATATTTTAAAAATTCAAATAGTT 60
consensus_9643#1      -----------------------------------------------------------T 1
                                                                                 *

consensus_9643#0      GTCTTGTTAAGTGAGCAGC-ATTCGGATCTACAAGATAGTCTTGAAGTCTAGCCAATAGA 119
consensus_9643#1      AACTCGACACTTCAGTGGCTATTCATATCTCTATAGTATTTT--AATATTGATCAAAGGT 59
                        ** *  *  * **  ** ****  ****  *   ** * *  **   *   ***  * 

consensus_9643#0      ATACATGCAAACTTCAGTTTTTCAAAGAAATCAACAGCACATTTTTTCACAGGTTCATC- 178
consensus_9643#1      GGATATG-GTCTGTTTCTTTATCAAGTTAATAAAGATACCAGTGAATCTGATGATGAAAA 118
                        * ***      *   *** ****   *** ** *   ** *   **  * * * *   

consensus_9643#0      -CACCTCAGTGGTTAAAGAAGATGTTTGATTCACATTAACACTTGAAATTCGACTTTTTG 237
consensus_9643#1      GCACAAAAGTATTTTGAGATGAT----GAAGAATATTTGTAGCTAGAAATTGGTTCTCCA 174
                       ***   ***  **  *** ***    **   * ***   *  *  ** * *  * *   

consensus_9643#0      ATTTACTCGATGTAGCAACAGATGCTGATGATTTAGTGAACT--GTCGACTTGTTCTGCT 295
consensus_9643#1      ATTT------TGCA-CAACA-----TTATTATTTAATATACTTAATTAAATTGATGAACT 222
                      ****      ** * *****     * ** ***** *  ***   *  * *** *   **

consensus_9643#0      TTTTAAAATTTT-GTAATTTG-ATTCAATGTCATCAAAGCAGAGATTTAGAAGTGCAACT 353
consensus_9643#1      TAGTAAGACATCAGTAAAATATAATTAGTAAAAT-ATGGGAATAATTGTTACCAACAACT 281
                      *  *** *  *  ****  *  * * * *   ** *  * *   ***   *    *****

consensus_9643#0      TCTAAGTCAATCCATTCACGATTGATTTGTGATTCACTATATACACTGTCCTCTTTGATA 413
consensus_9643#1      TTTTAACTAGTTGTCTTAC---TGATTTGTGATTCACTATATACACTGTCCTCTTTGATA 338
                      * * *   * *    * **   **************************************

consensus_9643#0      ACCGTTGGTGGAAGTTGATATCCACCTGAACTTGTTTGCAACGGTATCCTTAGATTTGGT 473
consensus_9643#1      ACCGTTGGTGGAAGTTGATATCCACCTGAACTTGTTTGCAACGGTATCCTT--------- 389
                      ***************************************************         

consensus_9643#0      TCAGATGGAGCCCTGGAGATTAGCATGGAATCATTTACATCTTGATTATATGAATCATGG 533
consensus_9643#1      ------------------------------------------------------------
                                                                                  

consensus_9643#0      TCTAGAGCTCCAGCTCTCAATAAAAGATTGACAAGTGTTTGAGCAGGACAAGTTAAAACT 593
consensus_9643#1      ------------------------------------------------------------
                                                                                  

consensus_9643#0      TGAAATAAATGTATTTCGTTACGTCTTGGACGTCCATTGTCCATTGAACCAGCTTTGATA 653
consensus_9643#1      ------------------------------------------------------------
                                                                                  

consensus_9643#0      GTGAATGTGAGTAGATTGTTTACTGGACACACATCTGGAGGAGTTATTCGATAGCGAGGA 713
consensus_9643#1      ------------------------------------------------------------
                                                                                  

consensus_9643#0      TAAAGTATACGACCAATTCGGAAACGTTCAACTTCAGCATTTCCATTACGTGGATCACTT 773
consensus_9643#1      ------------------------------------------------------------
                                                                                  

consensus_9643#0      AGAATGAGATATGGTTCACCATCATTGTCATCGATTGACATATTAAAACTACGTACATAT 833
consensus_9643#1      ------------------------------------------------------------
                                                                                  

consensus_9643#0      GTATAACATCCTTCCAACAGTAAGTCGACAGCAGTTTGTGTGTTTGGTAATACATTTGTA 893
consensus_9643#1      ------------------------------------------------------------
                                                                                  

consensus_9643#0      GGAGTAACCTCAAATGTTCGCAGGTGTTGTACTTTATACGTTTTTAAATGTCTGGAATTG 953
consensus_9643#1      ------------------------------------------------------------
                                                                                  

consensus_9643#0      TTTCTATTTCCATTCATTTTCTTAT 978
consensus_9643#1      -------------------------