These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9649#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 898 fasta sequence [CCTCGNAGCCAANAATTCGGCATGTGCAACGCTGTCAACTGGTAGTTTCAATCGTTCAGTTATCGTGATATTACTCTTGTGTTCTTCTAACAGTTTTCTGTTACTCTCACTATTAAGTCGTACTGAATTTTACGTGGTTACAAAATCATAGACTAAATTTCCTTTCATCTCCCGGTTCTAGCACACACTGCCTCTTATACTTCTTCCAGGCTAGACGCATATCTACCAAAGGTTAAAAGGTACAACTACATTTAGGATAATCAAGTTCAGTGTTTGCATTAATAAGTCTTTCAATCACCTACAATGTAAGATTTTGTTGCA-TCTTATATGCTCAGTGAGGCATCAGCTCAGTTTTTTTTTCATCTCAGATTCCCTATACCACACCTTATTCTATTCATCAATAACGTCTCATCACGCCAAGCCGAACCTCTCGAGGGCTATACGTTGCAATACATGACTAATTTCAACTCGTGGGAGGAGTTCGCGAAGGCGGCTGAGGTTCTTTATTTAGAAGACCCTTCAAAATGTCGTATGTGTACAAAATATAGACACGTGGACCGAAAGCTTGTGGTTAAATTAACCGATAATCACACAGTGTTAAAGTATGTCACAGATATGGCTCAAGATATCAAAAAGATTGAAAAATTGACAACCCTGCTTATGCGTCATATGGCTTCAAAGGAAAAGTAAAATTAGAAAGTCAAAGTTGTGCTTTCCTCCGTCATTGTGGCTTTCATTAATTATTAATTTGTACATACCTTCTAATTTTCACAAACACTCAACAT-GGGTGTTCTCCTGGTATACGAAGTCTCTTGCTCAAATTTCTGAATCCAATGTACTTTGTTATTCATGTAAGTCACTTCCATAAAGCTGTTCACTTGTAAAAAAAAAAAAAAAA] [+] EMBL CD081451 [CCTCGNAGCCAANAATTCGGCACGAGGAACGCTGTCAACTGGTAGTTTCAATCGTTCAGTTATCGTGATATTACTCTTGTGTTCTTCTAACAGTTTTCTGTTACTCTCACTATTAAGTCGTACTGAATTTTACGTGGTTACAAAATCATAGACTAAATTTCCTTTCATCTCCCGGTTCTAGCACACACTGCCTCTTATACTTCTTCCAGGCTAGACGCATATCTACCAAAGGTTAAAAGGTACAACTACATTTAGGATAATCAAGTTCAGTGTTTGCATTAATAAGTCTTTCAATCACCTACAATGTAAGATTTTGTTGCA TCTTATATGCTCAGTGAGGCATCAGCTCAGTTTTTTTTTCATCTCAGATTCCCTATACCACACCTTATTCTATTCATCAATAACGTCTCATCACGCCAAGCCGAACCTCTCGAGGGCTATACGTTGCAATACATGACTAATTTCAACTCGTGGGAGGAGTTCGCGAAGGCGGCTGAGGTTCTTTATTTAGAAGACCCTTCAAAATGTCGTATGTGTACAAAATATAGACACGTGGACCGAAAGCTTGTGGTTAAATTAACCGATAATCACACAGTGTTAAAGTATGTCACAGATATGGCTCAAGATATCAAAAAGATTGAAAAATTGACAACCCTGCTTATGCGTCATATGGCTTCANAGGGAAAGTAAAATTAGAAAGTCAAAGTTGTGCTTTCCTCCGTCATTGGGGCTTTCATTAATTATTAATTTGTACATACCTNCTAA TTTCAC AACACTCANCATGGGGTG TCTCCTGGTATACGAAGTCTCTTGCTCAAA TTCTGAATCCCATGTAC TTGGTATTCATGTAAGT ACTTCCAT AAGCT ] [-] EMBL CD187306 [ TGTGCAACGCTGTCAACTGGTAGTTTCAATCGTTCAGTTATCGTGATATTACTCTTGTGTTCTTCTAACAGTTTTCTGTTACTCTCACTATTAAGTCGTACTGAATTTTACGTGGTTACAAAATCATAGACTAAATTTCCTTTCATCTCCCGGTTCTAGCACACACTGCCTCTTATACTTCTTCCAGGCTAGACGCATATCTACCAAAGGTTAAAAGGTACAACTACATTTAGGATAATCAAGTTCAGTGTTTGCATTAATAAGTCTTTCAATCACCTACAATGTAAGATTTTGTTGCA TC ] [+] EMBL CD186453 [ tTGTGCAACGCTGTCAACTGGTAGTTTCAATCGTTCAGTTATCGTGATATTACTCTTGTGTTCTTCTAACAGTTTTCTGTTACTCTCACTATTAAGTCGTACTGAATTTTACGTGGTTACAAAATCATAGACTAAATTTCCTTTCATCTCCCGGTTCTAGCACACACTGCCTCTTATACTTCTTCCAGGCTAGACGCATATCTACCAAAGGTTAAAAG ] [-] EMBL CD075274 [ AAGATTNTG TGCATTCTTATATGCTCAGTGAGGCATCAGCTCAGTTTTTTTTTCATCTCAGATTCCCTATACCACACCTTATTCTATTCATCAATAACGTCTCATCACGCCAAGCCGAACCTCTCGAGGGCTATACGTTGCAATACATGACTAATTTCAACTCGTGGGAGGAGTTCGCGAAGGCGGCTGAGGTTCTTTATTTAGAAGACCCTTCAAAATGTCGTATGTGTACAAAATATAGACACGTGGACCGAAAGCTTGTGGTTAAATTAACCGATAATCACACAGTGTTAAAGTATGTCACAGATATGGCTCAAGATATCAAAAAGATTGAAAAATTGACAACCCTGCTTATGCGTCATATGGCTTCAAAGGAAAAGTAAAATTAGAAAGTCAAAGTTGTGCTTTCCTCCGTCATTGTGGCTTTCATTAATTATTAATTTGTACATACCTTCTAATTTTCACAAACACTCAACAT GGGTGTTCTCCTGGTATACGAAGTCTCTTGCTCAAATTTCTGAATCCAATGTACTTTGTTATTCATGTAAGTCACTTCCATAAAGCTG ] [-] EMBL AI395015 [ cgtTGGCCCGAAAGCTTGTGGTTAAATTAACCGATAATCACACAGTGTTAAAGTATGTCACAGATATGGCTCAAGATATCAAAAAGATTGAAAAATTGACAACCCTGCTTATGCGTCATATGGCTTCAAAGGAAAAGTAAAATTAGAAAGTCAAAGTTGTGCTTTCCTCCGTCATTGTGGCTTTCATTAATTATTAATTTGTACATACCTTCTAATTTTCACAAACACTCAACAT GGGTGTTCTCCTGGTATACGAAGTCTCTTGCTCAAATTTCTGAATCCAATGTACTTTGTTATTCATGTAAGTCACTTCCATAAAGCTGTTCACTTGTAAAAAAAAAAAAAAA ] [-] EMBL AI395727 [ cgAAGCTTGTGGTTAAATTAACCGATAATCACACAGTGTTAAAGTATGTCACAGATATGGCTCAAGATATCAAAAAGATTGAAAAATTGACAACCCTGCTTATGCGTCATATGGCTTCAAAGGAAAAGTAAAATTAGAAAGTCAAAGTTGTGCTTTCCTCCGTCATTGTGGCTTTCATTAATTATTAATTTGTACATACCTTCTAATTTTCACAAACACTCAACAT GGGTGTTCTCCTGGTATACGAAGTCTCTTGCTCAAATTTCTGAATCCAATGTACTTTGTTATTCATGTAAGTCACTTCCATAAAGCTGTTCACTTGTAAAAAAAAAAAAAAAA] consensusID : consensus_9649#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 679 fasta sequence [TTGTGCAACGCTGTCAACTGCACACACTGCCTCTTATACTTCTTCCAGGCTAGACGCATATCTACCAAAGGTTAAAAGGTACAACTACATTTAGGATAATCAAGTTCAGTGTTTGCATTAATAAGTCTTTCAATCACCTACAATTGAGGCATCAGCTCAGTTTTTTTTTCATCTCAGATTCCCTATACCACACCTTATTCTATTCATCAATAACGTCTCATCACGCCAAGCCGAACCTCTCGAGGGCTATACGTTGCAATACATGACTAATTTCAACTCGTGGGAGGAGTTCGCGAAGGCGGCTGAGGTTCTTTATTTAGAAGACCCTTCAAAATGTCGTATGTGTACAAAATATAGACACGTGGACCGAAAGCTTGTGGTTAAATTAACCGATAATCACACAGTGTTAAAGTATGTCACAGATATGGCTCAAGATATCAAAAAGATTGAAAAATTGACAACCCTGCTTATGCGTCATATGGCTTCAAAGGAAAAGTAAAATTAGAAAGTCAAAGTTGTGCTTTCCTCCGTCATTGTGGCTTTCATTAATTATTAATTTGTACATACCTTCTAATTTTCACAAACACTCAACATGGGTGTTCTCCTGGTATACGAAGTCTCTTGCTCAAATTCTGAATCCATGTACTTTGNTATTNCATGTAGTCACTTCCATAAAGCT] [+] EMBL CD079230 [TTGTGCAACGCTGTCAACTGCACACACTGCCTCTTATACTTCTTCCAGGCTAGACGCATATCTACCAAAGGTTAAAAGGTACAACTACATTTAGGATAATCAAGTTCAGTGTTTGCATTAATAAGTCTTTCAATCACCTACAATTGAGGCATCAGCTCAGTTTTTTTTTCATCTCAGATTCCCTATACCACACCTTATTCTATTCATCAATAACGTCTCATCACGCCAAGCCGAACCTCTCGAGGGCTATACGTTGCAATACATGACTAATTTCAACTCGTGGGAGGAGTTCGCGAAGGCGGCTGAGGTTCTTTATTTAGAAGACCCTTCAAAATGTCGTATGTGTACAAAATATAGACACGTGGACCGAAAGCTTGTGGTTAAATTAACCGATAATCACACAGTGTTAAAGTATGTCACAGATATGGCTCAAGATATCAAAAAGATTGAAAAATTGACAACCCTGCTTATGCGTCATATGGCTTCAAAGGAAAAGTAAAATTAGAAAGTCAAAGTTGTGCTTTCCTCCGTCATTGTGGCTTTCATTAATTATTAATTTGTACATACCTTCTAATTTTCACAAACACTCAACATGGGTGTTCTCCTGGTATACGAAGTCTCTTGCTCAAATTCTGAATCCATGTACTTTGNTATTNCATGTAGTCACTTCCATAAAGCT] [-] EMBL BG932445 [ AGGAGTTCGCGAAGGCGGCTGAGGTTCTTTATTTAGAAGACCCTTCAAAATGTCGTATGTGTACAAAATATAGACACGTGGACCGAAAGCTTGTGGTTAAATTAACCGATAATCACACAGTGTTAAAGTATGTCACAGATATGGCTCAAGATATCAAAAAGATTGAAAAATTGACAACCCTGCTTATGCGTCATATGGCTTCAAAGGAAAAGTAAAATTAGAAAGTCAAAGTTGTGCTTTCCTCCGTCATTGTGGCTTTCATTAATTATTAATTTGTACATACCTTCTAATTTTCACAAACACTCAACATGGGTGTTCTCCTGGTATACGAAGTCTCTc ] consensusID : consensus_9649#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence [CTGGTAGTTTCAATCGTTCAGTTATCGTGATATTACTCTTGTGTTCTTCTAACAGTTTTCTGTTACTCTCACTATTAAGTCGTACTGAATTTTACGTGGTTACAAAATCATAGACTAAATTTCCTTTCATCTCCCGGTTCTAGCACACACTGCCTCTTATACTTCTTCCAGGCTAGACGCATATCTACCAAAGGTTAAAAGTGTTTGCATTAATAAGTCTTTCAATCACCTACAATTGAGGCATCAGCTCAGTTTTTTTTTCATCTCAGATTCCCTATACCACACCTTATTCTATTCATCAATAACG] [+] EMBL CD188319 [CTGGTAGTTTCAATCGTTCAGTTATCGTGATATTACTCTTGTGTTCTTCTAACAGTTTTCTGTTACTCTCACTATTAAGTCGTACTGAATTTTACGTGGTTACAAAATCATAGACTAAATTTCCTTTCATCTCCCGGTTCTAGCACACACTGCCTCTTATACTTCTTCCAGGCTAGACGCATATCTACCAAAGGTTAAAAGTGTTTGCATTAATAAGTCTTTCAATCACCTACAATTGAGGCATCAGCTCAGTTTTTTTTTCATCTCAGATTCCCTATACCACACCTTATTCTATTCATCAATAACG] consensusID : consensus_9649#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 170 fasta sequence [TCTAACGCGGTGATTAAAATTAGAAAGTCAAAGTTGTGCTTTCCTCCGTCATTGTGGCTTTCATTAATTATTAATTTGTACATACCTTCTAATTTTCACAAACACTCAACATGGGTGTTCTCCTGGTATACGAAGTCTCTTGCTCAAATTTCTGAATCCAATGTACTTTG] [+] EMBL CD184493 [TCTAACGCGGTGATTAAAATTAGAAAGTCAAAGTTGTGCTTTCCTCCGTCATTGTGGCTTTCATTAATTATTAATTTGTACATACCTTCTAATTTTCACAAACACTCAACATGGGTGTTCTCCTGGTATACGAAGTCTCTTGCTCAAATTTCTGAATCCAATGTACTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9649#1 ------------------------------------------------------------ consensus_9649#3 ------------------------------------------------------------ consensus_9649#0 CCTCGNAGCCAANAATTCGGCATGTGCAACGCTGTCAACTGGTAGTTTCAATCGTTCAGT 60 consensus_9649#2 ------------------------------------------------------------ consensus_9649#1 ------------------------------------------------------------ consensus_9649#3 ------------------------------------------------------------ consensus_9649#0 TATCGTGATATTACTCTTGTGTTCTTCTAACAGTTTTCTGTTACTCTCACTATTAAGTCG 120 consensus_9649#2 ------------------------------------------------------------ consensus_9649#1 -----------------------------------------TTGTGCAACGCTGTCAACT 19 consensus_9649#3 ------------------------------------------------------------ consensus_9649#0 TACTGAATTTTACGTGGTTACAAAATCATAGACTAAATTTCCTTTCATCTCCCGGTTCTA 180 consensus_9649#2 ------------------------------------------------------------ consensus_9649#1 GCACACACTGCCTCTTATACTTCTTCCAGGCTAGACGCATATCTACCAAAGGTTAAAAGG 79 consensus_9649#3 ------------------------------------------------------------ consensus_9649#0 GCACACACTGCCTCTTATACTTCTTCCAGGCTAGACGCATATCTACCAAAGGTTAAAAGG 240 consensus_9649#2 ------------------------------------------------------------ consensus_9649#1 TACAACTACATTTAGGATAATCAAGTTCAGTGTTTGCATTAATAAGTCTTTCAATCACCT 139 consensus_9649#3 ------------------------------------------------------------ consensus_9649#0 TACAACTACATTTAGGATAATCAAGTTCAGTGTTTGCATTAATAAGTCTTTCAATCACCT 300 consensus_9649#2 ------------------------------------------------------------ consensus_9649#1 ACAAT------------------------------TGAGGCATCAGCTCAGTTTTTTTTT 169 consensus_9649#3 ------------------------------------------------------------ consensus_9649#0 ACAATGTAAGATTTTGTTGCATCTTATATGCTCAGTGAGGCATCAGCTCAGTTTTTTTTT 360 consensus_9649#2 ------------------------------------------------------------ consensus_9649#1 CATCTCAGATTCCCTATACCACACCTTATTCTATTCATCAATAACGTCTCATCACGCCAA 229 consensus_9649#3 ------------------------------------------------------------ consensus_9649#0 CATCTCAGATTCCCTATACCACACCTTATTCTATTCATCAATAACGTCTCATCACGCCAA 420 consensus_9649#2 ------------------------------------------------------------ consensus_9649#1 GCCGAACCTCTCGAGGGCTATACGTTGCAATACATGACTAATTTCAACTCGTGGGAGGAG 289 consensus_9649#3 ------------------------------------------------------------ consensus_9649#0 GCCGAACCTCTCGAGGGCTATACGTTGCAATACATGACTAATTTCAACTCGTGGGAGGAG 480 consensus_9649#2 ------------------------------------------------------------ consensus_9649#1 TTCGCGAAGGCGGCTGAGGTTCTTTATTTAGAAGACCCTTCAAAATGTCGTATGTGTACA 349 consensus_9649#3 ------------------------------------------------------------ consensus_9649#0 TTCGCGAAGGCGGCTGAGGTTCTTTATTTAGAAGACCCTTCAAAATGTCGTATGTGTACA 540 consensus_9649#2 ------------------------------------------------------------ consensus_9649#1 AAATATAGACACGTGGACCGAAAGCTTGTGGTTAAATTAACCGATAATCACACAGTGTTA 409 consensus_9649#3 ------------------------------------------------------------ consensus_9649#0 AAATATAGACACGTGGACCGAAAGCTTGTGGTTAAATTAACCGATAATCACACAGTGTTA 600 consensus_9649#2 ------------------------------------------------------CTGGTA 6 consensus_9649#1 AAGTATGTCACAGATATGGCTCAAGATATCAAAAAGATTGAAAAATTGACAACCCTGCTT 469 consensus_9649#3 ------------------------------------------------------------ consensus_9649#0 AAGTATGTCACAGATATGGCTCAAGATATCAAAAAGATTGAAAAATTGACAACCCTGCTT 660 consensus_9649#2 GTTTCAATCGTTCAGTTATCGTGATATTACTCTTGTGTTCTTCTAACAGTTTTCTGTTAC 66 consensus_9649#1 ATGCGTCATATGGCTTCAAAGGAAAAG-TAAAATTAGAAAGTCAAAGTTGTGCTTTCCTC 528 consensus_9649#3 -------------TCTAACGCGGTGAT-TAAAATTAGAAAGTCAAAGTTGTGCTTTCCTC 46 consensus_9649#0 ATGCGTCATATGGCTTCAAAGGAAAAG-TAAAATTAGAAAGTCAAAGTTGTGCTTTCCTC 719 consensus_9649#2 TCTCACTATTAAGTCGTACTGAATTTTACGTGGTTACAAAATCATAGACTAAATTTCCTT 126 * *** *** *** ** ****** consensus_9649#1 CGTCATTGTGGCTTTCATTAATTATTAATTTGTACATACCTTCTAATTTTCACAAACACT 588 consensus_9649#3 CGTCATTGTGGCTTTCATTAATTATTAATTTGTACATACCTTCTAATTTTCACAAACACT 106 consensus_9649#0 CGTCATTGTGGCTTTCATTAATTATTAATTTGTACATACCTTCTAATTTTCACAAACACT 779 consensus_9649#2 TCATCTCCCGG-TTCTAGCACACACTGCCTCTTATACTTCTTCCAGGCTAGACGCATATC 185 * ** ** * * * * * ** * **** * * ** * * consensus_9649#1 CAACATGGGT---GTTCTCCTGGTATACGAAGTCTCTTGCTCA-----AATT-CTGAATC 639 consensus_9649#3 CAACATGGGT---GTTCTCCTGGTATACGAAGTCTCTTGCTCA-----AATTTCTGAATC 158 consensus_9649#0 CAACATGGGT---GTTCTCCTGGTATACGAAGTCTCTTGCTCA-----AATTTCTGAATC 831 consensus_9649#2 TACCAAAGGTTAAAAGTGTTTGCATTAATAAGTCTTTCAATCACCTACAATTGAGGCATC 245 * ** *** ** ** ****** * *** **** * *** consensus_9649#1 CA-TGTACTTTGNTATTNCATGTAGTCACTTCCATAAAGCT------------------- 679 consensus_9649#3 CAATGTACTTTG------------------------------------------------ 170 consensus_9649#0 CAATGTACTTTGTTATTCATGTAAGTCACTTCCATAAAGCTGTTCACTTGTAAAAAAAAA 891 consensus_9649#2 AGCTCAGTTTTTTTTTCATCTCAGATTCCCTATACCACACCTTATTCTATTCATCAATAA 305 * *** consensus_9649#1 ------- consensus_9649#3 ------- consensus_9649#0 AAAAAAA 898 consensus_9649#2 CG----- 307 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||