These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9653#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1930 fasta sequence [AATAGGCTTATTGATATCATCACCTTACAAGTATTTCTTACACTTAAAAAACTGAACAACAGTTTGTTTTTAATGTAAATTAAGTGAAATAAAAAGTGGTAGTGTACAGTTAATTTCAGTTACTAAAACAAACAAGTACACATTTACAATTAATTAAGTTACCAATCATGTCATACGATTCTCACTGAACAGACGAATCGTGATTCGACTATATCAAATTTAATAAAAGACTCTATAAGTAGACACATTGAACAAAAAAAGAGAACATTATTAGAAAGCATTAGAGATCAGAAACACAGAAAATGTAGAAAAGTTAGGTAATAATTATTCAAGTTAGTGGAATTATCATCAAAGTATCCCAGTAAAACACAATATATTGTTTTCTTTTAACAATTGGATTTTGGAATACGTCGTGGATGAAAATGGATGTGGGGGAGAGGGGACTTTATTCAACTGACAGTGCAAGAGACTTCTGATATACTGTTATCATCGTCTCTATCATCATCCTCTCGATAAGTATTTCTTCGTTCCTCTTGTCCATGCTCTTCCCGCTCACTTGTTGTCTCATTTACTGTTGACTGTGAATTGATTGAATGAACTTCAATAGGGAAAAAATCAATTAACCATGGAGTAGTTACAATTTCGGAATCAGAAAAAGTAGCACTGATTGGTATTCTTCGTGTACGAATACGTCGTATATGTCGACTTTGACTAGAATGTATTCTACGTGAACGATTACGTTTACATTGTGTATTCTTCTCTACCGAAGTAGCATCAGACTCATCAGAAGAACTCAAATCACTATCGAATATGATAGCAGCAACTGATGGTTGAAAAGGGGTTTTTTCATCAGATAGATTCCCTGTTTTTGTTCGTTTTTGCTTAGGTGTTTGAGAACAACCTAACTGACAAGACAAATCAATTGATTCATTCCCAGTACGCTTTTGACTATCAGTTTGACCAACTGCTTCAATGTTTTCATTCACTAAATTCACGTTATTCAGAATAGATTCACTGTGCAATGTGTTGTCAAGACTTCTAGCAGAATGATTGGTATTAGTATGGGTTTCGTTCCCAGAATGTTGCAGTGCAGAATGAGAATCCCTTTCGAAATTGATGTCACGGTCATTATTATGACCATCATCGTCATCATCACTGGATTCATTCTCCTCTTCGTTATTCCGTTCATCAATACAATCGCGATTTCTCGATCCTCTAGCTCTATTAGAATCAAAATCAAGGCCACGAAAATTATAACCCATATTTAACAGCATTACTTCCAGAGGATCAGCGTTAGAACGTTGTTGATTCCGTTCAGCTGCTCCAACTTGATCTCTAACAACTCGTGATTGATCAGGGTCTTCTTCACAATTCGGTGACCATAGTCTTACGACAGAGTCAATTCCGGAACTTGCCAACAAACAAATAGACGGATGAGGTTGAACACAGTTCACAGTAGAACTGTCAGCTTTCAATATACGCATTATATTAGTTGTATTACGATCCCATATAAAAAATGCACCACAATCAGATCCACCGACAATATATTGCCCATAGCTCCCAAAGAAATTTGCTTCTTTAATATCTGTTATTGAATTGCAATGACCAACATAAGATGCTGAAAAATCGATGGCATTTTTTCGCCTTTCTCTTTCATCCTCATCTATCCACATCCGATTACATGAGCAGTTTAAACAAGCACATAGTTTCGGATTTATTCGATTGTCATGATTAAAACAATTCCATGACTCTGAGGATATTTGTTCACATATGTTATCGCTTTTTAAGAAAGATAAAGTTTCTGGGTTTGATACTGTAGATTTTTTGGTATCATTGTCACCATCATCATTATCACCGTTGGTATCGTTGTTATCATTATTATCATGAATTGATGTTTTTCTTTCACTAACTTGCTTTTCTTTTCCTTTCA] [+] EMBL CD077103 [AATAGGCTTATTGATATCATCACCTTACAAGTATTTCTTACACTTAAAAAACTGAACAACAGTTTGTTTTTAATGTAAATTAAGTGAAATAAAAAGTGGTAGTGTACAGTTAATTTCAGTTACTAAAACAAACAAGTACACATTTACAATTAATTAAGTTACCAATCATGTCATACGATTCTCACTGAACAGACGAATCGTGATTCGACTATATCAAATTTAATAAAAGACTCTATAAGTAGACACATTGAACAAAAAAAGAGAACATTATTAGAAAGCATTAGAGATCAGAAACACAGAAAATGTAGAAAAGTTAGGTAATAATTATTCAAGTTAGTGGAATTATCATCAAAGTATCCCAGTAAAACACAATATATTGTTTTCTTTTAACAATTGGATTTTGGAATACGTCGTGGATGAAAATGGATGTGGGGGAGAGGGGACTTTATTCAACTGACAGTGCAAGAGACTTCTGATATACTGTTATCATCGTCTCTATCATCATCCTCTCGATAAGTATTTCTTCGTTCCTCTTGTCCATGCTCTTCCCGCTCACTTGTTGT ] [+] EMBL CD090030 [ AAGATGGATGTGGGGGAGAGGGGACTTTATTCAACTGACAGTGCAAGAGACTTCTGATATACTGTTATCATCGTCTCTATCATCATCCTCTCGATAAGTATTTCTTCGTTCCTCTTGTCCATGCTCTTCCCGCTCACTTGTTGTCTCATTTACTGTTGACTGTGAATTGATTGAATGAACTTCAATAGGGAAAAAATCAATTAACCATGGAGTAGTTACAATTTCGGAATCAGAAAAAGTAGCACTGATTGGTATTCTTCGTGTACGAATACGTCGTATATGTCGACTTTGACTAGAATGTATTCTACGTGAACGATTACGTTTACATTGTGTATTCTTCTCTACCGAAGTAGCATCAGACTCATCAGAAGAACTCAAATCACTATCGAATATGATAGCAGCAACTGATGGTTGAAAAGGGGTTTTTTCATCAGATAGATTCCCTGTTTTTGTTCGTTTTTGCTTAGGTGTTTGAGAACAACCTAACTGACAAGACAAATCAATTGATTCATTCCCAGTACGCTTTTGACTATCAGTTTGACCAACTGCTTCAATGTTTTCATTCACTAAATTCACGTTATTCAGAATAGATTCACTGTGCAATGTGTTGTCA ] [-] EMBL CD090114 [ CTTCCCGCTCACTTGTTGTCTCATTTACTGTTGACTGTGAATTGATTGAATGAACTTCAATAGGGAAAAAATCAATTAACCATGGAGTAGTTACAATTTCGGAATCAGAAAAAGTAGCACTGATTGGTATTCTTCGTGTACGAATACGTCGTATATGTCGACTTTGACCAGAATGTATTCTACGTGAACGATTACGTTTACATTGTGTATTCTTCTCTACCGAAGTAGCATCAGACTCATCAGAAGAACTCAAATCACTATCGAATATGATAGCAGCAACTGATGGTTGAAAAGGGGTTTTTTCATCAGATAGATTCCCTGTTTTTGTTCGTTTTTGCTTAGGTGTTTGAGAACAACCTAACTGACAAGACAAATCAATTGATTCATTCCCAGTACGCTTTTGACTATCAGTTTGACCAACTGCTTCAATGTTTTCATTCACTAAATTCACGTTATTCAGAATAGATTCACTGTGCAATGTGTTGTCAAGACTTCTAGCAGAATGATTGGTATTAGTATGGGTTTCGTTCCCAGAATGTTGCAGTGCAGAATGAGAATCCCTTTCGAAATTGATGTCA ] [-] EMBL CD187518 [ GTTACAATTTCGGAATCAGAAAAAGTAGCACTGATTGGTATTCTTCGTGTACGAATACGTCGTATATGTCGACTTTGACTAGAATGTATTCTACGTGAACGATTACGTTTACATTGTGTATTCTTCTCTACCGAAGTAGCATCAGACTCATCAGAAGAACTCAAATCACTATCGAATATGATAGCAGCAACTGATGGTTGAAAAGGGG TTTTTCATCAGATAGATTCCCTGTTTTTGTTCGTTTTTGCTTAGGTGTTTGAGAACAACCTAACTGACAAGACAAATCAATTGATTCATTCCCAGTACGCT ] [+] EMBL CD194111 [ TCGACTTTGACTAGAATGTATTCTACGTGTACGATTACGTTTACATTGTGTATTCTTCTCTACCGAAGTAGCATCAGACTCATCAGAAGAACTCAAATCACTATCGAATATGATAGCAGCAACTGATGGTTGAAAAGGGGTTTTTTCATCAGATAGATTCCCTGTTTTTGTTCGTTTTTGCTTAGGTGTTTGAGAACAACCTAACTGACAAGACAAATCAATTG ] [-] EMBL CD115814 [ GATTCACTGTGCAATGTGTTGTCAAGACTTCTAGCAGAATGATTGGTATTAGTATGGGTTTCGTTCCCAGAATGTTGCAGTGCAGAATGAGAATCCCTTTCGAAATTGATGTCACGGTCATTATTATGACCATCATCGTCATCATCACTGGATTCATTCTCCTCTTCGTTATTCCGTTCATCAATACAATCGCGATTTCTCGATCCTCTAGCTCTATTAGAATCAAAATCAAGGCCACGAAAATTATAACCCATATTTAACAGCATTACTTCCAGAGGATCAGCGTTAGAACGTTGTTGATTCCGTTCAGCTGCTCCAACTTGATCTCTAACAACTCGTGATTGATCAGGGTCTTCTTCACAATTCGGTGACCATAGTCTTACGACAGAGTCAATTCCGGAACTTGCCAACAAACAAATAGACGGATGAGGTTGAACACAGTTCACAGTAGAACTGTCAGCTTTCAATATACGCATTATATTAGT ] [+] EMBL CD190383 [ GTGACCATAGTCTTACGACAGAGTCAATTCCGGAACTTGCCAACAAACAAATAGACGGATGAGGTTGAACACAGTTCACAGTAGAACTGTCAGCTTTCAATATACGCATTATATTAGTTGTATTACGATCCCATATAAAAAATGCACCACAATCAGATCCACCGACAATATATTGCCCATAGCTCCCAAAGAAATTTGCTTCTTTAATATCTGTTATTGAATTGCAATGACCAACATAAGATGCTGAAAAATCGATGGCATTTTTTCGCCTTTCTCTTTCATCCTCATCTATCCACATCCGATTACATGAGCAGTTTAAACAAGCACATAGTTTCGGATTTATTCGATTGTCATGATTAAAACAATTCCATGACTCTGAGGAT ] [-] EMBL CD112615 [ ATTTGCTTCTTTAATATCTGTTATTGAATTGCAATGACCAACATAAGATGCTGAAAAATCGATGGCATTTTTTCGCCTTTCTCTTTCATCCTCATCTATCCACATCCGATTACATGAGCAGTTTAAACAAGCACATAGTTTCGGATTTATTCGATTGTCATGATTAAAGCAATTCCATGACTCTGAGGATATTTGTTCACATATGTTATCGCTTTTTAAGAAAGATAAAGTTTCTGGGTTTGATACTGTAGATTTTTTGGTATCATTGTCACCATCATCATTATCACCGTTGGTATCGTTGTTATCATTATTATCATGAATTGATGTTTTTCTTTCACTAACTTGCTTTTCTTTTCCTTTCA] [-] EMBL CD112682 [ ATTTGCTTCTTTAATATCTGTTATTGAATTGCAATGACCAACATAAGATGCTGAAAAATCGATGGCATTTTTCCGCCTTTCTCTTTCATCCTCATCTATCCACATCCGATTACATGAGCAGTTTAAACAAGCACATAGTTTCGGATTTATTCGATTGTCATGATTAAAACAATTCCATGACTCTGAGGATATTTGTTCACATATGTTATCGCTTTTTAAGAAAGATAAAGTTTCTGGGTTTGATACTGTAGATTTTTTGGTATCATTGTCACCATCATCATTATCACCATTGGTATCGTTGTTATCATTATTATCATGAATTGATGCTTTTCTTTCACTAACTTGCTTTTCTTTTCCTTTCA] consensusID : consensus_9653#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [ACTGTTGACTGTGAATTGATTGAATGAACTTCAATAGGGAAAAAATCAATTAGCCATGGAGTAGTTACAATTTCGGAATCAGAAAAAGTAGCACTGATTGGTATTCTTCGTGTACGAATACGTCGTATATGTCGACTTTGACTAGAATGTATTCTACGTGAACGATTACGTTTACATTGTGTATTCTTCTCTACCGAAGTAGCATCAGACTCATCAGAAGAACTCAAATCACTATCGAATATGATAGCAGCAACTGATGGTTGAAAAGGGGTTTTTTCATCAGATAGATTCCCTGTCTTTGTTCGTAAATGCTTAGGTGTTTGAGAACAACGTAACTGACAAGACAAATCAATTGATTCATTCCCAGTACGCTTTTGAATATCAGTTTGACCAACTGCTTCAATGTTTTCATCACTAAATTCACGTTACCATCGGTCTTCCATCG] [-] EMBL CD114116 [ACTGTTGACTGTGAATTGATTGAATGAACTTCAATAGGGAAAAAATCAATTAGCCATGGAGTAGTTACAATTTCGGAATCAGAAAAAGTAGCACTGATTGGTATTCTTCGTGTACGAATACGTCGTATATGTCGACTTTGACTAGAATGTATTCTACGTGAACGATTACGTTTACATTGTGTATTCTTCTCTACCGAAGTAGCATCAGACTCATCAGAAGAACTCAAATCACTATCGAATATGATAGCAGCAACTGATGGTTGAAAAGGGGTTTTTTCATCAGATAGATTCCCTGTCTTTGTTCGTAAATGCTTAGGTGTTTGAGAACAACGTAACTGACAAGACAAATCAATTGATTCATTCCCAGTACGCTTTTGAATATCAGTTTGACCAACTGCTTCAATGTTTTCATCACTAAATTCACGTTACCATCGGTCTTCCATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9653#0 AATAGGCTTATTGATATCATCACCTTACAAGTATTTCTTACACTTAAAAAACTGAACAAC 60 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 AGTTTGTTTTTAATGTAAATTAAGTGAAATAAAAAGTGGTAGTGTACAGTTAATTTCAGT 120 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 TACTAAAACAAACAAGTACACATTTACAATTAATTAAGTTACCAATCATGTCATACGATT 180 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 CTCACTGAACAGACGAATCGTGATTCGACTATATCAAATTTAATAAAAGACTCTATAAGT 240 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 AGACACATTGAACAAAAAAAGAGAACATTATTAGAAAGCATTAGAGATCAGAAACACAGA 300 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 AAATGTAGAAAAGTTAGGTAATAATTATTCAAGTTAGTGGAATTATCATCAAAGTATCCC 360 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 AGTAAAACACAATATATTGTTTTCTTTTAACAATTGGATTTTGGAATACGTCGTGGATGA 420 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 AAATGGATGTGGGGGAGAGGGGACTTTATTCAACTGACAGTGCAAGAGACTTCTGATATA 480 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 CTGTTATCATCGTCTCTATCATCATCCTCTCGATAAGTATTTCTTCGTTCCTCTTGTCCA 540 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 TGCTCTTCCCGCTCACTTGTTGTCTCATTTACTGTTGACTGTGAATTGATTGAATGAACT 600 consensus_9653#1 ------------------------------ACTGTTGACTGTGAATTGATTGAATGAACT 30 ****************************** consensus_9653#0 TCAATAGGGAAAAAATCAATTAACCATGGAGTAGTTACAATTTCGGAATCAGAAAAAGTA 660 consensus_9653#1 TCAATAGGGAAAAAATCAATTAGCCATGGAGTAGTTACAATTTCGGAATCAGAAAAAGTA 90 ********************** ************************************* consensus_9653#0 GCACTGATTGGTATTCTTCGTGTACGAATACGTCGTATATGTCGACTTTGACTAGAATGT 720 consensus_9653#1 GCACTGATTGGTATTCTTCGTGTACGAATACGTCGTATATGTCGACTTTGACTAGAATGT 150 ************************************************************ consensus_9653#0 ATTCTACGTGAACGATTACGTTTACATTGTGTATTCTTCTCTACCGAAGTAGCATCAGAC 780 consensus_9653#1 ATTCTACGTGAACGATTACGTTTACATTGTGTATTCTTCTCTACCGAAGTAGCATCAGAC 210 ************************************************************ consensus_9653#0 TCATCAGAAGAACTCAAATCACTATCGAATATGATAGCAGCAACTGATGGTTGAAAAGGG 840 consensus_9653#1 TCATCAGAAGAACTCAAATCACTATCGAATATGATAGCAGCAACTGATGGTTGAAAAGGG 270 ************************************************************ consensus_9653#0 GTTTTTTCATCAGATAGATTCCCTGTTTTTGTTCGTTTTTGCTTAGGTGTTTGAGAACAA 900 consensus_9653#1 GTTTTTTCATCAGATAGATTCCCTGTCTTTGTTCGTAAATGCTTAGGTGTTTGAGAACAA 330 ************************** ********* ********************* consensus_9653#0 CCTAACTGACAAGACAAATCAATTGATTCATTCCCAGTACGCTTTTGACTATCAGTTTGA 960 consensus_9653#1 CGTAACTGACAAGACAAATCAATTGATTCATTCCCAGTACGCTTTTGAATATCAGTTTGA 390 * ********************************************** *********** consensus_9653#0 CCAACTGCTTCAATGTTTTCATTCACTAAATTCACGTTATTCAGAATAGATTCACTGTGC 1020 consensus_9653#1 CCAACTGCTTCAATGTTTTCAT-CACTAAATTCACGTTAC-CATCGGTCTTCCATCG--- 445 ********************** **************** ** * ** * consensus_9653#0 AATGTGTTGTCAAGACTTCTAGCAGAATGATTGGTATTAGTATGGGTTTCGTTCCCAGAA 1080 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 TGTTGCAGTGCAGAATGAGAATCCCTTTCGAAATTGATGTCACGGTCATTATTATGACCA 1140 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 TCATCGTCATCATCACTGGATTCATTCTCCTCTTCGTTATTCCGTTCATCAATACAATCG 1200 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 CGATTTCTCGATCCTCTAGCTCTATTAGAATCAAAATCAAGGCCACGAAAATTATAACCC 1260 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 ATATTTAACAGCATTACTTCCAGAGGATCAGCGTTAGAACGTTGTTGATTCCGTTCAGCT 1320 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 GCTCCAACTTGATCTCTAACAACTCGTGATTGATCAGGGTCTTCTTCACAATTCGGTGAC 1380 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 CATAGTCTTACGACAGAGTCAATTCCGGAACTTGCCAACAAACAAATAGACGGATGAGGT 1440 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 TGAACACAGTTCACAGTAGAACTGTCAGCTTTCAATATACGCATTATATTAGTTGTATTA 1500 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 CGATCCCATATAAAAAATGCACCACAATCAGATCCACCGACAATATATTGCCCATAGCTC 1560 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 CCAAAGAAATTTGCTTCTTTAATATCTGTTATTGAATTGCAATGACCAACATAAGATGCT 1620 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 GAAAAATCGATGGCATTTTTTCGCCTTTCTCTTTCATCCTCATCTATCCACATCCGATTA 1680 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 CATGAGCAGTTTAAACAAGCACATAGTTTCGGATTTATTCGATTGTCATGATTAAAACAA 1740 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 TTCCATGACTCTGAGGATATTTGTTCACATATGTTATCGCTTTTTAAGAAAGATAAAGTT 1800 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 TCTGGGTTTGATACTGTAGATTTTTTGGTATCATTGTCACCATCATCATTATCACCGTTG 1860 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 GTATCGTTGTTATCATTATTATCATGAATTGATGTTTTTCTTTCACTAACTTGCTTTTCT 1920 consensus_9653#1 ------------------------------------------------------------ consensus_9653#0 TTTCCTTTCA 1930 consensus_9653#1 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||