These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9654#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 983 fasta sequence [CTCGCGGCCAANAATTCGGCACGAGGCACGGGAATTCCTACAACATTCATCCAATTGTATACCAGAATTCATAGTACATCTCATGAACGTTATCAATTTAACCTATGTCTCTGGATATATCATAGTATTGGCTCCGATGAACAAATGTGAACACGATCAAGATCTGAATAAACTAGCTTCAGAAGACCAAGACATTTTATTGACTAGCACAGATTCGATTTTACAACGTGATCAACAAAAAAGTGAATATAATTGTTGTAGGAAAGCTGTTTTAGTAGAAAATGAATTGCTTACTATTATGAAAGAGCATAAACCAATCTATTTCATTACTTTACGTTTAGGTTTGCCCATCTTTAACATGGAATTAAATCACGCCGTTTGTGCTCAAATATCTAGTCAGAATTTATTATCCACTAATAACCGCAATCATCTTGAAGCTACTAATCATCTACTTGTTGAAGAATTTACCAAATTTATTTTTAATGACTGTTCAGGTTTGCTACCCAACAAAAACCAATATAGTTATTCAACTTTTGTTACCAGTTCTGGTGGTAATTTTCCTGATACTTGGCCCCTGCCTACAAAAAATATGATGTGCGCCAATGGTGTTTTGTCATTTATTTAGGCTTTTTCACCACACCTAATAATAGTTAATCTGAAATTATTTTTGGTTGTAACGCGTACATATCTATTTTAGTCAAATAATTTAATCGTTTGATAAACACTCATTTTAATTTTTTGTGTGTTATTTGTTATTTACGTATCACCTAGGTTTTATCCTTTTTTATTTTTAATTTCTATCCATTCTTTCGTATTTTTATATCCAACCCTAAAAATATTTTGTTATACATGTGACAGCAGAAAATATCGTTCTATTTATTCTGTAATTGATTCTTGACAAAGTCATGTCCATATATCAGTGACTGCATACTGGATACATCAGTCATCAATGCAAACTTGGTAATTAGATTACAGGTAGTTTC] [+] EMBL CD080205 [CTCGCGGCCAANAATTCGGCACGAGGCACGGGAATTCCTACAACATTCATCCAATTGTATACCAGAATTCATAGTACATCTCATGAACGTTATCAATTTAACCTATGTCTCTGGATATATCATAGTATTGGCTCCGATGAACAAATGTGAACACGATCAAGATCTGAATAAACTAGCTTCAGAAGACCAAGACATTTTATTGACTAGCACAGATTCGATTTTACAACGTGATCAACAAAAAAGTGAATATAATTGTTGTAGGAAAGCTGTTTTAGTAGAAAATGAATTGCTTACTATTATGAAAGAGCATAAACCAATCTATTTCATTACTTTACGTTTAGGTTTGCCCATCTTTAACATGGAATTAAATCACGCCGTTTGTGCTCAAATATCTAGTCAGAATTTATTATCCACTAATAACCGCAATCATCTTGAAGCTACTAATCATCTACTTGTTGAAGAATTTACCAAATTTATTTTTAATGACTGTTCAGGTTTGCTACCCAACAAAAACCAATATAGTTATTCAACTTTTGTTACCAGTTCTGGTGGTAATTTTCCTGATACTTGGCCCCTGCCTACAAAAAATATGATGTGCGCCAATGGTGTTTTGTCATTTATTTAGGCTTTTTCACCACACCTAATAATAGTTAATCTGAAATTATTTTTGGTTGTAACGCGTACATATCTATTTTAGTCAAATAATTTAATCGTTTGAT AACACTCATTNTAATTNTTTGTGTGTTATTTGTTATTTACGTATCACCTAGGTTTTATCCTTTTTTATTTTTAA TTCTAT CATTCTTTCG A TTTTATATCC ACCCT ANNATATTTTGTTAc ] [+] EMBL CD123413 [ ATCCACTAATAACCGCAATCATCTTGAAGCTACTAATCATCTACTTGTTGAAGAATTTACCAAATTTATTTTTAATGACTGTTCAGGTTTGCTACCCAACAAAAACCAATATAGTTATTCAACTTTTGTTACCAGTTCTGGTGGTAATTTTCCTGATACTTGGCCCCTGCCTACAAAAAATATGATGTGCGCCAATGGTGTTTTGTCATTTATTTAGGCTTTTTCACCACACCTAATAATAGTTAATCTGAAATTATTTTTGGTTGTAACGCGTACATATCTATTTTAGTCAAATAATTTAATCGTTTGATAAACACTCATTTTAATTTTTTGTGTGTTATTTGTTATTTACGTATCACCTAGGTTTTATCCTTTTTTATTTTTAATTTCTATCCATTCTTTCGTATTTTTATATCCAACCCTAAAAATATTTTGTTATACATGTGACAGCAGAAAATATCGTTCTATTTATTCTGTAATTGATTCTTGACAAAGTCATGTCCATATATCAGTGACTGCATACTGGATACATCAGTCATCAATGCAAACTTGGTAATTAGATTACAGGTAGTTTC] [+] EMBL CD123431 [ ATCCACTAATAACCGCAATCATCTTGAAGCTACTAATCATCTACTTGTTGAAGAATTTACCAAATTTATTTTTAATGACTGTTCAGGTTTGCTACCCAACAAAAACCAATATAGTTATTCAACTTTTGTTACCAGTTCTGGTGGTAATTTTCCTGATACTTGGCCCCTGCCTACAAAAAATATGATGTGCGCCAAAGGTGTTTTGTCATTTATTTAGGCTTTTTCACCACACCTAATAATAGTTAATCTGAAATTATTTTTGGTTGTAACGCGTACATATCTATTTTAGTC AATAATTTAATCGTTTGATAAACACTCATTTTAATTTTTTGTGTGTTATTTGTTATTTACGTATCACCTAGGTTTTATCCTTTTTTATTTTTAATTTCTATCCATTCTTTCGTATTTTTATATCCAACCCTAAAAATATTTTGTTATACATGTGACAGCAGAAAATATCGTTCTATTTATTCTGTAATTGATTCTTGACAAAGTCATGTCCATATATCAGTGACTGCATATTGGATACATCAGTCATCAATGCA ] consensusID : consensus_9654#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 883 fasta sequence [TTTGATTCGACTATCACGGCTTATCTCATGATGGGCAATTTATCACCCAACTTAA-AGCCTCATGCA-GTTACAATGTTTGAA-GTCGGGAAATTGTCAGATGATTCATTGAATTCTTTCGTATTTGAATTAAATCATCTTGTTCCTGTTTCAGAAGGTGAAGTCGGGGTTTATCGCGAGTATGCTCTGAATTTAAGAAAAACAATCCACTTTTTGCGTAGTCAGGCTTCATTAGACTCAACGGACTTCTGTGATGTTGATTTAATTAGAGGTGGTTCGTTGTTAAGTTTAGAGGCTGAAACACGCATACGAGTTTTGCGCAAAAATTATAATGTAGTTGTGAGCCTTATCCCCTCAACATATGAAGACCAGCAAGCTTCTGATTCCCAATGGCCACCACATTTAGGACCACCTATATCAGAAGCTAATTCTCCTTGGTTCGGCTTTCTTATTTCTTGTGTCGCAAGCCATACAATTCAAAGAAAACAGAATCCCAGTGTCGATGTATTGCCTACTCTTTTGACAACATGTGGTACTAGGATATCTAGGCTTCCATCACCTTTACGAGGAATTTCACGCTTCTGGCTTACTGCATGGGGTCATGACGCTGTGGTGGTAGATTCAACTAATTTTTTAACCACAGCAAACGATATGCTTCTATCATCGCCTGTACTTATCCAAGCCATCGAAAGTTATGAATTTGAAGAAAATTTGTCCCAGAGATACATACCTTTACCTATTTCCAAGGAATTCCTACAACATTCATCCAATTGTATACCAGAATTCATAGTACATCTCATGAACGTTATCAATTTAACCTATGTCTCTGGATATATCATAGTATTGGCTCCGATGAACAAATGTGAACACGATCAAGATCTGAATA] [+] EMBL CD084278 [TTTGATTCGACTATCACGGCTTATCTCATGATGGGCAATTTATCACCCAACTTAACAGCCTCATGCACGTTACAATGTTTGAATGTCGGGAAATTGTCAGATGATTCATTGAATTCTTTCGTATTTGAATTAAATCATCTTGTTCCTGTTTCAGAAGGTGAAGTCGGGGTTTATCGCGAGTATGCTCTGAATTTAAGAAAAACAATCCACTTTTTGCGTAGTCAGGCTTCATTAGACTCAACGGACTTCTGTGATGTTGATTTAATTAGAGGTGGTTCGTTGTTAAGTTTAGAGGCTGAAACACGCATACGAGTTTTGCGCAAAAATTATAATGTAGTTGTGAGCCTTATCCCCTCAACATATGAAGACCAGCAAGCTTCTGATTCCCAATGGCCACCACATTTAGGACCACCTATATCAGAAGCTAATTCTCCTTGGTTCGGCTTTCTTATTTCTTGTGTCGCAAGCCATACAATTCAAAGAAAACAGAATCCCAGTGTCGATGTATTGCCTACTCTTTT ] [+] EMBL CD112770 [ CAATTTATCACCCAACTTAA AGCCTCATGCA GTTACAATGTTTGAA GTCGGGAAATTGTCAGATGATTCATTGAATTCTTTCGTATTTGAATTAAATCATCTTGTTCCTGTTTCAGAAGGTGAAGTCGGGGTTTATCGCGAGTATGCTCTGAATTTAAGAAAAACAATCCACTTTTTGCGTAGTCAGGCTTCATTAGACTCAACGGACTTCTGTGATGTTGATTTAATTAGAGGTGGTTCGTTGTTAAGTTTAGAGGCTGAAACACGCATACGAGTTTTGCGCAAAAATTATAATGTAGTTGTGAGCCTTATCCCCTCAACATATGAAGACCAGCAAGCTTCTGATTCCCAATGGCCACCACATTTAGGACCACCTATATCAGAAGCTAATTCTCCTTGGTTCGGCTTTTTTATTTCTTGTGTCGCAAGCAATACAATTCAAAGAAAACAGAATCCCAGTGTCGATGTATTGCCTACTCTTTTG ] [+] EMBL CD148351 [ CAATTTATCACCCAACTTAA AGCCTCATGCA GTTACAATGTTTGAG GTCGGGAAATTGTCAGATGATTCATTGAATTCTTTCGTATTTGAATTAAATCATCTTGTTCCTGTTTCAGAAGGTGAAGTCGGGGTTTATCGCGAGTATGCTCTGAATTTAAGAAAAACAATCCACTTTTTGCGTAGTCAGGCTTCATTAGACTCAACGGACTTCTGTGATGTTGATTTAATTAGAGGTGGTTCGTTGTTAAGTTTAGAGGCTGAAACACGCATACGAGTTTTGCGCAAAAATTATAATGTAGTTGTGAGCCTTATCCCCTCAACATATGAAGACCGGCAAGCTTCTGATTCCCAATGGCCACCACTTTTAGGACCACCTATATCAGAAGCTAATTC ] [+] EMBL CD148297 [ CAATTTATCACCCAACTTAA AGCCTCATGCA GTTACAATGTTNGAA GNCGGGAAATTGTCAGATGATTCATTGAATTCTTTCGTATTTGAATTAAATCATCTTGTTCCTGTTTCAGAAGGGGAGTTCTGGGTTTATCGCGAGTATGCTCTGAATTagac ] [-] EMBL CD148281 [ AATTTATCACCCAACTTAA AGCCTCATGCA GTTACAATGTTTGAA GTCGGGAGATTGTCAGATGATTCATTGAATTCTTTCGTATTTGAGTTAAATCATCTTGTTCCTGTTTCAGAAGGTGAAGTCGGGGTTTATCGCGAGTATGCTCTGAATTTAAGAAAAACAATCCACTTTTTGCGTAGTCAGGCTTCATTAGACTCAACGGACTTCTGTGATGTTGATTTAATTAGAGGTGGTTCGTTGTTAAGTTTAGAGGCTGAAACACGCATACGAGTTTTGCGCAAAAATTATAATGTAGTTGTGAGCCTTATCCCCTCAACATATGAAGGCCAGCAAGCTTCTGATTCCCAATGGCCACCACTTTTAGGACCACCTATATCAGAAGCTAATTCT ] [-] EMBL CD132137 [ CAATTCAAAGAAAACAGAATCCCAGTGTCGATGTATTGCCTACTCTTTTGACAACATGTGGTACTAGGATATCTAGGCTTCCATCACCTTTACGAGGAATTTCACGCTTCTGGCTTACTGCATGGGGTCATGACGCTGTGGTGGTAGATTCAACTAATTTTTTAACCACAGCAAACGATATGCTTCTATCATCGCCTGTACTTATCCAAGCCATCGAAAGTTATGAATTTGAAGAAAATTTGTCCCAGAGATACATACCTTTACCTATTTCCAAGGAATTCCTACAACATTCATCCAATTGTATACCAGAATTCATAGTACATCTCATGAACGTTATCAATTTAACCTATGTCTCTGGATATATCATAGTATTGGCTCCGATGAACAAATGTGAACACGATCAAGATCTGAATA] consensusID : consensus_9654#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [ATCCACTAATAACCGCAATCATCTTGAAGCTACTAATCATCTACTTGTTGAAGAATTACCAAATTTATTTTAATGCGTGGGAGGTTTGNCACAAAAATNCTTGNNNNNNNNNACTTTGGTCCCAGTTGGGGGGATATTCGTTCAGCNCGGGNNNCCGTNNNNCAAAAAATATGATGTGCGCCAATGGTGTTTTGTCATTTATTTAGGCTTTTTCACCACACCTAATAATAGTTAATCTGAAATTATTTTTGGTTGTAACGCGTACATATCTATTNTAGTCAATAATTTAATCGTTTGATAAACACTCATTNTAATTTTTTGTGTGTTATTTGTTATTTACG] [+] EMBL CD123411 [ATCCACTAATAACCGCAATCATCTTGAAGCTACTAATCATCTACTTGTTGAAGAATTACCAAATTTATTTTAATGCGTGGGAGGTTTGNCACAAAAATNCTTGNNNNNNNNNACTTTGGTCCCAGTTGGGGGGATATTCGTTCAGCNCGGGNNNCCGTNNNNCAAAAAATATGATGTGCGCCAATGGTGTTTTGTCATTTATTTAGGCTTTTTCACCACACCTAATAATAGTTAATCTGAAATTATTTTTGGTTGTAACGCGTACATATCTATTNTAGTCAATAATTTAATCGTTTGATAAACACTCATTNTAATTTTTTGTGTGTTATTTGTTATTTACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9654#0 CTCGCGGCCAANAATTCGGCACGAGGCACGGGAATTCCTACAACATTCATCCAATTGTAT 60 consensus_9654#2 ------------------------------------------------------------ consensus_9654#1 -------------------------------------------------------TTTGA 5 consensus_9654#0 ACCAGAATTCATAGTACATCTCATGAACGTTATCAATTTAACCTATGTCTCTGGATATAT 120 consensus_9654#2 ------------------------------------------------------------ consensus_9654#1 TTCGACTATCACGGCTTATCTCATGATGGGCAATTTATCACCCAACTTAAAGCCTCATGC 65 consensus_9654#0 CATAGTATTGGCTCCGATGAACAAATGTGAACACGATCAAGATCTGAATAAACTAGCTTC 180 consensus_9654#2 ------------------------------------------------------------ consensus_9654#1 AGTTACAATGTTTGAAGTCGGGAAATTGTCAGATGATTCA---TTGAATTCTTTCGTATT 122 consensus_9654#0 AGAAGACCAAGACATTTTATTGACTAGCACAGATTCGATTTTACAACGTGATCAACAAAA 240 consensus_9654#2 ------------------------------------------------------------ consensus_9654#1 TGAA--TTAAATCATCTTGTTC-CTGTTTCAGA----AGGTGAAGTCGGGGTTTATCGCG 175 consensus_9654#0 AAGTGAATATAATTGTTGTAGGAAAGCTGTTTTAGTAGAAAATGAATTGCTTACTATTAT 300 consensus_9654#2 ------------------------------------------------------------ consensus_9654#1 AGTATGCTCTGAATTTAAGAAAAACAATCCACTTTTTGCGTAGTCAGGCTTCATTAGACT 235 consensus_9654#0 GAAAGAGCATAAACCAATCTATTTCATTACTTTACGTTTAGGTTTGCCCATCTTTAACAT 360 consensus_9654#2 ------------------------------------------------------------ consensus_9654#1 CAACGGACTTCTGTGATGTTGATTTAATTAGAGGTGGTTCG--TTGTTAAGTTTAGAGGC 293 consensus_9654#0 GGAATTAAATCACGCCGTTTGTGCTCAAATATCTAGTCAGAATTTATTATCCACTAATAA 420 consensus_9654#2 ------------------------------------------------ATCCACTAATAA 12 consensus_9654#1 TGAAACACG-CATACGAGTTTTGCGCAAAAAT-TATAATGTAGTTGTGAGC--CTTATCC 349 * * ** ** consensus_9654#0 CCGCAATCATCTTGAAGCTACTAATCATCTACTTGTTGAAGAATTTACCAAATTTATTTT 480 consensus_9654#2 CCGCAATCATCTTGAAGCTACTAATCATCTACTTGTTGAAGAATT-ACCAAATTTATTTT 71 consensus_9654#1 CCTCAA-CATATGAAGACCAGCAAGCTTCTGATTCCCAATGGCC--ACCACATTTAGGAC 406 ** *** *** * * * * ** * *** ** * * **** ***** consensus_9654#0 TAATGACTGTTCAGGTTTGCTACCCAACAAAAACCAATATAGTTATTCAACTTTTGTTAC 540 consensus_9654#2 -AATGCGTGGG-AGGTTTGNC-----ACAAAAATNCTTGNNNNNNNNNA--CTTTGGTCC 122 consensus_9654#1 CACCTATATCAGAAGCTAATT---CTCCTTGGTTCGGCTTTCTTATTTC--TTGTGTCGC 461 * * * * * * ** * consensus_9654#0 CAGTTCTGGTGGTAATTTTCCTGATACTTGGCCCCTGCCTACAAAAAATATGATGTGCGC 600 consensus_9654#2 CAGTTGGGGGGATA-TTCGTTCAGCNCGGGNNNCCGTNNNNCAAAAAATATGATGTGCGC 181 consensus_9654#1 AAGCCAT----ACAATTCAAAGAAAACAGAATCCCAGTGTCGATGTATTGCCTACTCTTT 517 ** * ** * ** * * * * consensus_9654#0 CAATGGTGTTTTGTCATT---TATTTAGGCTTTTTCACCACACCTAATAATAGTTAATCT 657 consensus_9654#2 CAATGGTGTTTTGTCATT---TATTTAGGCTTTTTCACCACACCTAATAATAGTTAATCT 238 consensus_9654#1 TGACAACATGTGGTACTAGGATATCTAGGCTTC--CATCACCTTTACGAGGAATT---TC 572 * * * ** * *** ******* ** *** ** * * ** consensus_9654#0 GAAATTATTTTTGGTTGTAACGCGT-ACATATCTATTTTAGTCAAATAATTTAATCGTTT 716 consensus_9654#2 GAAATTATTTTTGGTTGTAACGCGT-ACATATCTATTNTAGTCAA-TAATTTAATCGTTT 296 consensus_9654#1 ACGCTTCTGGCTTACTGCATGGGGTCATGACGCTGTGGTGGTAGATTCAACTAATTTTTT 632 ** * * ** * * ** * ** * * ** * * * **** *** consensus_9654#0 GATAAACACTCATTTTAATTTTTTGTGTGTTATTTGTTATTTACGTATCACCTAGGTTTT 776 consensus_9654#2 GATAAACACTCATTNTAATTTTTTGTGTGTTATTTGTTATTTACG--------------- 341 consensus_9654#1 AACCACAGCAAACGATATGCTTCTAT-CATCGCCTGTACTTATCCAAGCCATCGAAAGTT 691 * * * * ** ** * * * *** ** * consensus_9654#0 ATCCTTTTTTATTTTTAATTTCTATCCATTCTTTCGTATTTTTATATCCAACCCTAAAAA 836 consensus_9654#2 ------------------------------------------------------------ consensus_9654#1 ATGAATTTGAA---GAAAATTTGTCCCAGAGATACATACCTTTACCTATTTCCAAGGAAT 748 consensus_9654#0 TATTTTGTTATACATGTGACAGCAGAAAATATCGTTCTATTTATTCTGTAATTGATTCTT 896 consensus_9654#2 ------------------------------------------------------------ consensus_9654#1 TCCTACAACATTCATCCAATTGTATACCAGAATTCATAGTACATCTCATGAACGTTATCA 808 consensus_9654#0 GACAAAGTCATGTCCATATATCAGTGACTGCATACTGGATACATCAGTCATCAATGCAAA 956 consensus_9654#2 ------------------------------------------------------------ consensus_9654#1 ATTTAACCTATGTCTCTGGATATATCATAGTATTGGCTCCGATGAACAAATGTGAACACG 868 consensus_9654#0 CTTGGTAATTAGATTACAGGTAGTTTC 983 consensus_9654#2 --------------------------- consensus_9654#1 ATCAAGATCTGAATA------------ 883 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||