These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9655#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 867 fasta sequence [ATTCATCGACGATAACAAATTGTTACCTTCCCGTATTAACACTGTTGGGGTCCCGTTTGACAATACATTTGATAACTACAATAGCCTTCACAATCTAAGCAAGCCGTCTGTTTTGGTTGAATATTATCAGCTCCTAGTAAAGTTAGTGCATGATCGTAACAGATGTGCTTCGCACCTAAAAACCCTAATCGGGATTCAAAGTAACCTGTTTTGATTTTAAATTAGTCTCTTTTAGATAAATTTGGAAAGGCTTTCAGTACAAGATGCATAGGTTGCTTGTTTTAACTACTTATTTTATATGCTTTTAGACTTTCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGTCTTTAATAAATCACCTGCATCAGCATTC-AAAGCTACAGTTCCATATTCTTGCTCACCGTACTGCAATTTATTGTTTGGAGTTTGATAGGCGTGGAAATTACGTTTTCACAGGATCCGATGATTACACCATTAAAGTCTGGTCTGTAAAAGGATCAAGTACACCATCGTGTACCTTACGCCATACTCTTCGAGGTCATGTTGCTGAAATAATTGAACTAACTATATCTATCGATAACCATTTACTCGCATCAATAGATTCAAACTGCTGCCTAGTAATATGGTGCCTGAAAACTGGACAACCAGTAGTAGCTGTTCGTGGATCACGTAATAACCGGGTACTGTCTGGTCTCGCTTTCCTCAATGTACCTAAAATAGTGAGGCCAGTGAACACAGATTCATCAAATTCGAATGATGTTAATCATCCTTCTGGTATGCTCATAGTATCATCCTTTGATGGTTATCTTCACATCATACCTTATATTCACACCGTCCATCATGCTCATCGTGAGGATGAGTT] [+] EMBL CD069325 [ATTCATCGACGATAACAAATTGTTACCTTCCCGTATTAACACTGTTGGGGTCCCGTTTGACAATACATTTGATAACTACAATAGCCTTCACAATCTAAGCAAGCCGTCTGTTTTGGTTGAATATTATCAGCTCCTAGTAAAGTTAGTGCATGATCGTAACAGATGTGCTTCGCACCTAAAAACCCTAATCGGGATTCAAAGTAACCTGTTTTGATTTTAAATTAGTCTCTTTTAGATAAATTTGGAAAGGCTTTCAGTACAAGATGCATAGGTTGCTTGTTTTAACTACTTATTTTATATGCTTTTAGACTTTCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGTCTTTAATAAATCACCTGCATCAGCATTC AAAGCTGCAGTTCCATATTCTTGCTCACCGTACTGCAATTTATTGCTTGGAGTTTGATAAGCGTGGGAATTACGTTTTCACAGGATCCGATGATTACACCATTAAAGTCTGGTCTGTAAAAGGTTCAAGTACACCATCATGTAACTTACGCCATACTCTTCGAGGTCATGTTGCTGAAATAATTGAA TAACTGT TTTTTCGATt ] [-] EMBL CD117580 [ CTTTAATAAATCA CTGCAACAGCATTCAAAAGCGACGGTTCCATATTCTTGCTCACCGTACTGCAATTTATTGTTTAAAGTTTAATAGGCGTGGAAATTACGTTTTCACAGGATCCGAAGATAACACCATTAAAGTCTGGTCTGTAAAAGGATCAAGTACACCATCGTGTACCTTACGCCATACTATTGGAGGTCATGTTGCTGAAATAATTGAACTAACTATATCTATCGATAACCATTTACTCGCATCAATAGATTCAAACTGCTGCCTAGTAATATGGTGCCTGAAAACTGGACAACCAGTAGTAGCTGTTCGTGGATCACGTAATAACCGGGTACTGTCTGGTCTCGCTTTCCTCAATGTACCTAAAATAGTGAGGCCAGTGAACACAGATTCATCAAATTCGAATGATGTTAATCATCCTTCTGGTATGCTCATAGTATCATCCTTTGATGGTTATCTTCACATCATACCTTATATTCACACCGTCCATCATGCTCATCGTGAGGATGAGTT] [+] EMBL CD116785 [ CTTTAATAAATCACTTGCATCAGCATTC AAAGCTACAGTTCCATATTCTTGCTCACCGTACTGCAATTTATTGTTTGGAGTTTGATAGGCGTGGAAATTACGTTTTCACAGGATCCGATGATTACACCATTAAAGTCTGGTCTGTAAAAGGATCAAGTACACCATCGTGTACCTTACGCCATACTCTTCGAGGTCATGTTGCTGAAATAATTGAACTAACTATATCTATCGATAACCATTTACTCGCATCAATAGATTCAAACTGCTGCCTAGTAATATGGTGCCTGAAAACTGGACAACCAGTAGTAGCTGTTCGTGGATCACGTAATAACCGGGTACTGTCTGGTCTCGCTTTCCTCAATGTACCTAAAATAGTGAGGCCAGTGAACACAGATTCATCAAATTCGAATGATGTTAATCATCCTTCTGGTATGCTCATAGTATCATCCTTTGGTGGTTATCTTCACATCATACCTTATATTCACACCGTCCATCATGCTCATCGTGAGGATGAGT ] [-] EMBL CD117508 [ TTTAATAAATCACGGGCATCGGCATTC AAAGATACAGTTCCATATTCTTGCTCGCCGTACTGCAATTTATTGTTTGGAGTTTGATAGGCGTGGAAATTACGTTTTCACAGGATCCGATGATTACACCATTAAAGTCTGGTCTGTAAAAGGATCAAGTACACCATCGTGTACCTTACGCCATACTCTTCGAGGTCATGTTGCTGAAATAATTGAACTAACTATATCTATCGATAACCATTTACTCGCATCAATAGATTCAAACTGCTGCCTAGTAATATGGTGCCTGAAAACTGGACAACCAGTAGTAGCTGTTCGTGGATCACGTAATAACCGGGTACTGTCTGGTCTCGCTTTCCTCAATGTACCTAAAATAGTGAGGCCAGTGAACACAGATTCATCAAATTCGAATGATGTTAATCATCCTTCTGGTATGCTCATAGTATCATCCTTTGATGGTTATCTTCACATCATACCTTATATTCACACCGTCCATCATGCTCATCGTGAGGATGAGTT] [+] EMBL CD147593 [ TTAATAAATCACCTGCATCAGCATTC AAAGCTGCAGTTCCATATTCTTGCTCACCGTACTGCAATTTATTGCTTGGAGTTTGATAAGCGTGGGAATTACGTTTTCACAGGATCCGATGATTACACCATTAAAGTCTGGTCTGTAAAAGGTTCAAGTACACCATCATGTACCTTACGCCATACTCTTCGAGGTCATGTTGCTGAAATAATTGAACTAACTGTATCTATCGATAACCATTTACTCGCATCAATAGATTCGAACTGCTGCCTAGTAATATGGTGCCTGAAAACTGGACAACCAGTAGTAGCTGTTCGTGGATCACGTAATAACC ] consensusID : consensus_9655#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 564 fasta sequence [CCAGTACTGAGGGTTGCGCGTGATGGATATAAAAGCCGAGTTGTTTTTCTTGGTAGTGAAGCTGTTAGAAGATGAGGGGTGTGTTACTGCGGCTGAGTCTTTG-AAAAAATTCATCGACGATAACAAATTGTTACCTTCCCGTATTAACACTGCTGGGGTCCCGTTTGACAATACATTTGATAACTACAATAGCCTTCATAATCTAAGCAAGCCATCTGTTTTGGTTGAATATTATCAACTCCTAGTAAAGTTAGTTCATGATCGTAACAGATGTGCTTCGCACCTAAAAACCCTAATCGGAATTCAAAATAAATTTGGAAAGGCTTTCAGTACAAGATGCATAGACTTTCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGTCTTTAATAAATCACTTGCATCAGCATTCAAAGCTACAGTTCCATATTCTTGCTCACCGTACTGCAATTTATTGTTTGGAGTTTGATAGGCGTGGAAATTACGTTTTCACAGGATCCGATGATTACACCATTAAAGTCTGGTCTGTAAAAGGATCAAGTACACCATCGTGTACCTTACG] [+] EMBL CD194389 [CCAGTACTGAGGGTTGCGCGTGATGGATATAAAAGCCGAGTTGTTTTTCTTGGTAGTGAAGCTGTTAGAAGATGAGGGGTGTGTTACTGCGGCTGAGTCTTTGAAAAAAATTCATCGACGATAACAAATTGTTACCTTCCCGTATTTACACTGCTGGGGTCCCGTTTGACAATACATTTGATAACTACAATAGCCTTCATAATCTAAGCAAGCCATCTGTTTTGGTTGAATATTATCAACTCCTAGTAAAGTTAGTTCATGATCGTAACAGATGTGCTTCGCACCTAAAAACCCTAATCGGAATTCAAAATAAATTTGGAAAGGCTTTCAGTACAAGATGCATAGACTTTCATATGGTATCGAAAGATCACAAAAGGGCACGGAGGTC ] [-] EMBL CD097517 [ GTTAGAAGATGAGGGGTGTGTTACTGCGGCTGAGTCTTTG AAAAAATTCATCGACGATAACAAATTGTTACCTTCCCGTATTAACACTGCTGGGGTCCCGTTTGACAATACATTTGATAACTACAATAGCCTTCATAATCTAAGCAAGCCATCTGTTTTGGTTGAATATTATCAACTCCTAGTAAAGTTAATTCATGATCGTAACAGATGTGCTTCGCACCTAAAAACCCTAATCGGAATTCAAAATAAATTTGGAAAGGCTTTCAGTACAAGATGCATAGACTTTCATATGGTATCGAAAGACCACAAAAGGTCACGGAGGTCTTTAATAAATCACTTGCATCAGCATTCAAAGCTACAGTTCCATATTCTTGCTCACCGTACTGCAATTTATTGTTTGGAGTTTGATAGGCGTGGAAATTACGTTTTCACAGGATCCGATGATTACACCATTAAAGTCTGGTCTGTAAAAGGATCAAGTACACCATCGTGTACCTTACG] [+] EMBL CD181600 [ GTGTTACTGCTGCTGAGTCTTTG AAAAGATTCATCGACGATAACAAATTGTTACCTTCCCGTATTAACACTGTTGGGGTCCCGTTTGACAATACATTTGATAACTACAATAGCCTTCACAATCTAAGCAAGCCGTCTGTTTTGGTTGAATATTATCAGCTCCTAGTAAAGTTAGTGCATGATCGTAACAGATGTGCTTCGCACCTAAAAACCCTAATCGGGATTCAAAATAAATTTGGAAAGGCTTTCAGTACAAGATGCATAGACTTTCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGTCTTTAATAA ] [+] EMBL CD137058 [ cnCCTTCATAATCTAAGCAAGCCATCTGTTTTGGTTGAATATTATCAACTCCTAGTAAAGTTAGTTCATGATCGTAACAGATGTGCTTCGCACCTAAAAACCCTAATCGGAATTCAAAATAAATTTGGAAAGGCTTTCAGTACAAGATGCATAGACTTTCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGT ] consensusID : consensus_9655#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence [YTTGGTTGAATATTATCAGCTCCTAGTAAAGTTAGTGCATGATCGTAACACACGTGCTTCGCACTAAMCTATCACAAAATAAATTTCGGCAAAGGCTTTCCAGTACAAGATGCATAGACTTTCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGTCTTTAATAAATCAGCCTGCATCAGCATTCAAAGCTGCAGT] [+] EMBL BE519460 [YTTGGTTGAATATTATCAGCTCCTAGTAAAGTTAGTGCATGATCGTAACACACGTGCTTCGCACTAAMCTATCACAAAATAAATTTCGGCAAAGGCTTTCCAGTACAAGATGCATAGACTTTCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGTCTTTAATAAATCAGCCTGCATCAGCATTCAAAGCTGCAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9655#0 ------------------------------------------------------------ consensus_9655#2 ------------------------------------------------------------ consensus_9655#1 CCAGTACTGAGGGTTGCGCGTGATGGATATAAAAGCCGAGTTGTTTTTCTTGGTAGTGAA 60 consensus_9655#0 ------------------------------------------------ATTCATCGACGA 12 consensus_9655#2 ------------------------------------------------------------ consensus_9655#1 GCTGTTAGAAGATGAGGGGTGTGTTACTGCGGCTGAGTCTTTGAAAAAATTCATCGACGA 120 consensus_9655#0 TAACAAATTGTTACCTTCCCGTATTAACACTGTTGGGGTCCCGTTTGACAATACATTTGA 72 consensus_9655#2 ------------------------------------------------------------ consensus_9655#1 TAACAAATTGTTACCTTCCCGTATTAACACTGCTGGGGTCCCGTTTGACAATACATTTGA 180 consensus_9655#0 TAACTACAATAGCCTTCACAATCTAAGCAAGCCGTCTGTTTTGGTTGAATATTATCAGCT 132 consensus_9655#2 ---------------------------------------YTTGGTTGAATATTATCAGCT 21 consensus_9655#1 TAACTACAATAGCCTTCATAATCTAAGCAAGCCATCTGTTTTGGTTGAATATTATCAACT 240 ***************** ** consensus_9655#0 CCTAGTAAAGTTAGTGCATGATCGTAACAGATGTGCTTCGCACCTAAAAACCCTAATCGG 192 consensus_9655#2 CCTAGTAAAGTTAGTGCATGATCGTAACACACGTGCTTCGCACT---AAMCTATCA---- 74 consensus_9655#1 CCTAGTAAAGTTAGTTCATGATCGTAACAGATGTGCTTCGCACCTAAAAACCCTAATCGG 300 *************** ************* * *********** ** * * * consensus_9655#0 GATTCAAAGTAACCTGTTTTGATTTTAAATTAGTCTCTTTTAGATAAATTTGGAAAGGCT 252 consensus_9655#2 ----CAAAATAA---ATTTCGGC-----------------------------AAAGGCTT 98 consensus_9655#1 AATTCAAAATAA----ATTTG-------------------------------GAAAGGCT 325 **** *** ** * ** * * consensus_9655#0 TTCAGTACAAGATGCATAGGTTGCTTGTTTTAACTACTTATTTTATATGCTTTTAGACTT 312 consensus_9655#2 TCCAGTACAAGATGCATAG-------------------------------------ACTT 121 consensus_9655#1 TTCAGTACAAGATGCATAG-------------------------------------ACTT 348 * ***************** **** consensus_9655#0 TCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGTCTTTAATAAATCA-CCTGCATC 371 consensus_9655#2 TCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGTCTTTAATAAATCAGCCTGCATC 181 consensus_9655#1 TCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGTCTTTAATAAATCA-CTTGCATC 407 *************************************************** * ****** consensus_9655#0 AGCATTCAAAGCTACAGTTCCATATTCTTGCTCACCGTACTGCAATTTATTGTTTGGAGT 431 consensus_9655#2 AGCATTCAAAGCTGCAGT------------------------------------------ 199 consensus_9655#1 AGCATTCAAAGCTACAGTTCCATATTCTTGCTCACCGTACTGCAATTTATTGTTTGGAGT 467 ************* **** consensus_9655#0 TTGATAGGCGTGGAAATTACGTTTTCACAGGATCCGATGATTACACCATTAAAGTCTGGT 491 consensus_9655#2 ------------------------------------------------------------ consensus_9655#1 TTGATAGGCGTGGAAATTACGTTTTCACAGGATCCGATGATTACACCATTAAAGTCTGGT 527 consensus_9655#0 CTGTAAAAGGATCAAGTACACCATCGTGTACCTTACGCCATACTCTTCGAGGTCATGTTG 551 consensus_9655#2 ------------------------------------------------------------ consensus_9655#1 CTGTAAAAGGATCAAGTACACCATCGTGTACCTTACG----------------------- 564 consensus_9655#0 CTGAAATAATTGAACTAACTATATCTATCGATAACCATTTACTCGCATCAATAGATTCAA 611 consensus_9655#2 ------------------------------------------------------------ consensus_9655#1 ------------------------------------------------------------ consensus_9655#0 ACTGCTGCCTAGTAATATGGTGCCTGAAAACTGGACAACCAGTAGTAGCTGTTCGTGGAT 671 consensus_9655#2 ------------------------------------------------------------ consensus_9655#1 ------------------------------------------------------------ consensus_9655#0 CACGTAATAACCGGGTACTGTCTGGTCTCGCTTTCCTCAATGTACCTAAAATAGTGAGGC 731 consensus_9655#2 ------------------------------------------------------------ consensus_9655#1 ------------------------------------------------------------ consensus_9655#0 CAGTGAACACAGATTCATCAAATTCGAATGATGTTAATCATCCTTCTGGTATGCTCATAG 791 consensus_9655#2 ------------------------------------------------------------ consensus_9655#1 ------------------------------------------------------------ consensus_9655#0 TATCATCCTTTGATGGTTATCTTCACATCATACCTTATATTCACACCGTCCATCATGCTC 851 consensus_9655#2 ------------------------------------------------------------ consensus_9655#1 ------------------------------------------------------------ consensus_9655#0 ATCGTGAGGATGAGTT 867 consensus_9655#2 ---------------- consensus_9655#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||