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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9658#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 470 fasta sequence
[CGGGTTCAAGGTCGTTGAAATGGAATGGCGGGTGGCTTTGAATGAACTTTACGCCTTTATCTTGCACTCATCACTAAGATGCCTTTATGCTGCGGTGGAATCGGAACACCTAGAGAACCGTCTGCAGAGGAAAAAGAAAAACTTAAGACTCTGTTAGAAAGCAAGCTGGAGTCTCATATCGGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAACAAATCACTTC-GTCAAGGTGAAACTAGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACC-GCTACCCTGTCATGGCAAAGAACTTCAATTACACTCTGTCGTTAAAGACAAAAAGGAAAGTGATGCGTTGGAATATTTCTGAAACTCGATTTTCATGCCCACCACTTGTTAACTTATATTCCTGTCTTTTATAATTTATTAATATACTTTTGATGCTTATAAAAAAAA]
[+] EMBL AY334553 [CGGGTTCAAGGTCGTTGAAATGGAATGGCGGGTGGCTTTGAATGAACTTTACGCCTTTATCTTGCACTCATCACTAAGATGCCTTTATGCTGCGGTGGAATCGGAACACCTAGAGAACCGTCTGCAGAGGAAAAAGAAAAACTTAAGACTCTGTTAGAAAGCAAGCTGGAGTCTCATATCGGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAACAAATCACTTC GTCAAGGTGAAACTAGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACC GCTACCCTGTCATGGCAAAGAACTTCAATTACACTCTGTCGTTAAAGACAAAAAGGAAAGTGATGCGTTGGAATATTTCTGAAACTCGATTTTCATGCCCACCACTTGTTAACTTATATTCCTGTCTTTTATAATTTATTAATATACTTTTGATGCTTATAAAAAAAA]
[+] EMBL SMCPI [ TTTATCTTGCACTCATCACTAAGATGCCTTTATGCTGCGGTGGAATCGGAACACCTAGAGAACCGTCTGCAGAGGAAAAAGAAAAACTTAAGACTCTGTTAGAAAGCAAGCTGGAGTCTCATATCGGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAACAAATCACTTCAATCAAGGTGAAACTAGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACC GCTACCCTGTCATGGCAAAGAACTTCAATTACACTCTGTCGTTAAAGACAAAAAGGAAAGTGATGCGTTGGAATATTTCTGAAACTCGATTTTCATGCCCACCACTTGTTAACTTATATTCCTGTCTTTTATAATTTATTAATATACTTT ]
[-] EMBL CD167384 [ CTTGCACTCATCACTAAGATGCCTTTATGCTGCGGTGGAATCGGAACACCTAGAGAACCGTCTGCAGAGGAAAAAGAAAAACTTAAGACTCTGTTAGAAAGCAAGCTGGAGTCTCATATCGGACGGAAACCTCGTTCATTTGAAATCGTCTAGATCACTAGTCAGGTAGTCGCTGGAACAAATCACTCC GTCAAGGTGAAACTAGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACC GCTACCCTGTCATGGCATAGAACTTCAATTACACTCTGTCGTTAA ]
[+] EMBL CD182161 [ CAGAGGAAAAAGAAAAACTTAAGACTCTGTTAGAAAGCAAGCTGGAGTCTCATATCGGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAACAAATCACTTC GTCAAGGTGAAACTAGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACC GCTACCCTGTCATGGCAAAGAACTTCAATTACACTCTGTCGTTAAAGACAAAAAGGAAAGTGATGCGTTGGAATATTTCTGAAACTCGATTT ]
[+] EMBL CD201745 [ AAACTTAAGACTCTGTTAGAAAGCAAGCTGGAGTCTCATATCGGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAACAAATCACTTC GTCAAGGTGAAACTAGACAATGGCGAGTATATTCATGCTCGAAT ]
[+] EMBL BF440114 [ AGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACC GCTACCCTGTCATGGCAAAGAACTTCAATTACACTCTGTCGTTAAAGACAAAAAGGAAAGTGATGCGTTGGAATATTTCTGAAACTCGATTTTCATGCCCACCACTTGTTAACTTATATTCCTGTCTTTTATAATTTATTAATATACTTT ]
[+] EMBL CD202640 [ GACAATGGCGAGTATATTCATGCTCGAATTTTCGAACCNGCT CCCTGTCATGGCAAAGAACTTCAATTACACTCTGTCGTTAAAGACAAAAAGGAAAGTGATGCGTTGGAATATTTCGGAGGCTCGATTTTCA ]
consensusID : consensus_9658#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 321 fasta sequence
[CTCTCGCTCATCACTAAGATGCCTTTATGCTGCGGTGGAATCGGAACACCTAGAGAACCGTCTGCAGAGGAAAAAGAAAAACTT-AAGACTCTGAAAG-CAAGCTGGAGTCTCATATCGGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAACAAATCACTTCGTCAAGGTAACGTTTAGGTTCTCTGTCTACTGAAGCTTTACAGGTGAAACTAGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACCGCTACCCTGTCATGGCAAAGAACTTCAATTACACTCTGTCG-TTAAA]
[+] EMBL CD167290 [ TCTCGCTCATCACTAAGATGCCTTTATGCTGCGGTGGAATCGGAACACCTAGAGAACCGTCTGCAGAGGAAAAAGAAAAACTTAAAGACTCTGAAAG CAAGCTGGAGTCTCATATCGGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAATAAATCACTTCGTCAAGGTAACGTTTAGGTTCTCTGTCTACTGAAGCTTTACAGGTGAAACTAGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACCGCTACCCTGTCATGGCAAAGAACTTCAATTACACTCTGTCG TTAAA]
[-] EMBL CD167418 [cttgcaCTCATCACTAAGATGCCTTTATGCTGCGGTGGAATCGGAACACCTAGAGAACCGTCTGCAGAGGAAAAAGAAAAACTT AAGACTCTGAAAG CAAGCTGGAGTCTCATATCGGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAACAAATCACTTCGTCAAGGTAACGTTTAGGTTCTCTGTCTACTGAAGCTTTACAGGTGAAACTAGACAATGGCGAGTATATTCATGCTCGAATTTTCGAGCCGCTACCCTGTCATGGC AAGAACTTCAATTACACTCTGTCG TTAAA]
[+] EMBL CD167390 [ AGAGGAAAAAGAAAAAGTT ATGACTCTGAAAGACAAGCTGGAGTCTCATATCGGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAACAAATCACTTCGTCAAGGTAACGTTTAGGTTCTCTGTCTACTGAGGCTTTACAGGTGAAACTAGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACCGCTACCCTGTCATGGCAAAGAACTTCAATTACACTCTGTCGCTTAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9658#0 CGGGTTCAAGGTCGTTGAAATGGAATGGCGGGTGGCTTTGAATGAACTTTACGCCTTTAT 60
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 CTTGCACTCATCACTAAGATGCCTTTATGCTGCGGTGGAATCGGAACACCTAGAGAACCG 120
consensus_9658#1 CTCTCGCTCATCACTAAGATGCCTTTATGCTGCGGTGGAATCGGAACACCTAGAGAACCG 60
** * ******************************************************
consensus_9658#0 TCTGCAGAGGAAAAAGAAAAACTTAAGACTCTGTTAGAAAGCAAGCTGGAGTCTCATATC 180
consensus_9658#1 TCTGCAGAGGAAAAAGAAAAACTTAAGACTCTG----AAAGCAAGCTGGAGTCTCATATC 116
********************************* ***********************
consensus_9658#0 GGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAACA 240
consensus_9658#1 GGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAACA 176
************************************************************
consensus_9658#0 AATCACTTCGTCAAGGT-------------------------------------GAAACT 263
consensus_9658#1 AATCACTTCGTCAAGGTAACGTTTAGGTTCTCTGTCTACTGAAGCTTTACAGGTGAAACT 236
***************** ******
consensus_9658#0 AGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACCGCTACCCTGTCATGGCAAAGA 323
consensus_9658#1 AGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACCGCTACCCTGTCATGGCAAAGA 296
************************************************************
consensus_9658#0 ACTTCAATTACACTCTGTCGTTAAAGACAAAAAGGAAAGTGATGCGTTGGAATATTTCTG 383
consensus_9658#1 ACTTCAATTACACTCTGTCGTTAAA----------------------------------- 321
*************************
consensus_9658#0 AAACTCGATTTTCATGCCCACCACTTGTTAACTTATATTCCTGTCTTTTATAATTTATTA 443
consensus_9658#1 ------------------------------------------------------------
consensus_9658#0 ATATACTTTTGATGCTTATAAAAAAAA 470
consensus_9658#1 ---------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||