These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9658#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 470 fasta sequence [CGGGTTCAAGGTCGTTGAAATGGAATGGCGGGTGGCTTTGAATGAACTTTACGCCTTTATCTTGCACTCATCACTAAGATGCCTTTATGCTGCGGTGGAATCGGAACACCTAGAGAACCGTCTGCAGAGGAAAAAGAAAAACTTAAGACTCTGTTAGAAAGCAAGCTGGAGTCTCATATCGGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAACAAATCACTTC-GTCAAGGTGAAACTAGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACC-GCTACCCTGTCATGGCAAAGAACTTCAATTACACTCTGTCGTTAAAGACAAAAAGGAAAGTGATGCGTTGGAATATTTCTGAAACTCGATTTTCATGCCCACCACTTGTTAACTTATATTCCTGTCTTTTATAATTTATTAATATACTTTTGATGCTTATAAAAAAAA] [+] EMBL AY334553 [CGGGTTCAAGGTCGTTGAAATGGAATGGCGGGTGGCTTTGAATGAACTTTACGCCTTTATCTTGCACTCATCACTAAGATGCCTTTATGCTGCGGTGGAATCGGAACACCTAGAGAACCGTCTGCAGAGGAAAAAGAAAAACTTAAGACTCTGTTAGAAAGCAAGCTGGAGTCTCATATCGGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAACAAATCACTTC GTCAAGGTGAAACTAGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACC GCTACCCTGTCATGGCAAAGAACTTCAATTACACTCTGTCGTTAAAGACAAAAAGGAAAGTGATGCGTTGGAATATTTCTGAAACTCGATTTTCATGCCCACCACTTGTTAACTTATATTCCTGTCTTTTATAATTTATTAATATACTTTTGATGCTTATAAAAAAAA] [+] EMBL SMCPI [ TTTATCTTGCACTCATCACTAAGATGCCTTTATGCTGCGGTGGAATCGGAACACCTAGAGAACCGTCTGCAGAGGAAAAAGAAAAACTTAAGACTCTGTTAGAAAGCAAGCTGGAGTCTCATATCGGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAACAAATCACTTCAATCAAGGTGAAACTAGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACC GCTACCCTGTCATGGCAAAGAACTTCAATTACACTCTGTCGTTAAAGACAAAAAGGAAAGTGATGCGTTGGAATATTTCTGAAACTCGATTTTCATGCCCACCACTTGTTAACTTATATTCCTGTCTTTTATAATTTATTAATATACTTT ] [-] EMBL CD167384 [ CTTGCACTCATCACTAAGATGCCTTTATGCTGCGGTGGAATCGGAACACCTAGAGAACCGTCTGCAGAGGAAAAAGAAAAACTTAAGACTCTGTTAGAAAGCAAGCTGGAGTCTCATATCGGACGGAAACCTCGTTCATTTGAAATCGTCTAGATCACTAGTCAGGTAGTCGCTGGAACAAATCACTCC GTCAAGGTGAAACTAGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACC GCTACCCTGTCATGGCATAGAACTTCAATTACACTCTGTCGTTAA ] [+] EMBL CD182161 [ CAGAGGAAAAAGAAAAACTTAAGACTCTGTTAGAAAGCAAGCTGGAGTCTCATATCGGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAACAAATCACTTC GTCAAGGTGAAACTAGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACC GCTACCCTGTCATGGCAAAGAACTTCAATTACACTCTGTCGTTAAAGACAAAAAGGAAAGTGATGCGTTGGAATATTTCTGAAACTCGATTT ] [+] EMBL CD201745 [ AAACTTAAGACTCTGTTAGAAAGCAAGCTGGAGTCTCATATCGGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAACAAATCACTTC GTCAAGGTGAAACTAGACAATGGCGAGTATATTCATGCTCGAAT ] [+] EMBL BF440114 [ AGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACC GCTACCCTGTCATGGCAAAGAACTTCAATTACACTCTGTCGTTAAAGACAAAAAGGAAAGTGATGCGTTGGAATATTTCTGAAACTCGATTTTCATGCCCACCACTTGTTAACTTATATTCCTGTCTTTTATAATTTATTAATATACTTT ] [+] EMBL CD202640 [ GACAATGGCGAGTATATTCATGCTCGAATTTTCGAACCNGCT CCCTGTCATGGCAAAGAACTTCAATTACACTCTGTCGTTAAAGACAAAAAGGAAAGTGATGCGTTGGAATATTTCGGAGGCTCGATTTTCA ] consensusID : consensus_9658#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 321 fasta sequence [CTCTCGCTCATCACTAAGATGCCTTTATGCTGCGGTGGAATCGGAACACCTAGAGAACCGTCTGCAGAGGAAAAAGAAAAACTT-AAGACTCTGAAAG-CAAGCTGGAGTCTCATATCGGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAACAAATCACTTCGTCAAGGTAACGTTTAGGTTCTCTGTCTACTGAAGCTTTACAGGTGAAACTAGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACCGCTACCCTGTCATGGCAAAGAACTTCAATTACACTCTGTCG-TTAAA] [+] EMBL CD167290 [ TCTCGCTCATCACTAAGATGCCTTTATGCTGCGGTGGAATCGGAACACCTAGAGAACCGTCTGCAGAGGAAAAAGAAAAACTTAAAGACTCTGAAAG CAAGCTGGAGTCTCATATCGGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAATAAATCACTTCGTCAAGGTAACGTTTAGGTTCTCTGTCTACTGAAGCTTTACAGGTGAAACTAGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACCGCTACCCTGTCATGGCAAAGAACTTCAATTACACTCTGTCG TTAAA] [-] EMBL CD167418 [cttgcaCTCATCACTAAGATGCCTTTATGCTGCGGTGGAATCGGAACACCTAGAGAACCGTCTGCAGAGGAAAAAGAAAAACTT AAGACTCTGAAAG CAAGCTGGAGTCTCATATCGGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAACAAATCACTTCGTCAAGGTAACGTTTAGGTTCTCTGTCTACTGAAGCTTTACAGGTGAAACTAGACAATGGCGAGTATATTCATGCTCGAATTTTCGAGCCGCTACCCTGTCATGGC AAGAACTTCAATTACACTCTGTCG TTAAA] [+] EMBL CD167390 [ AGAGGAAAAAGAAAAAGTT ATGACTCTGAAAGACAAGCTGGAGTCTCATATCGGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAACAAATCACTTCGTCAAGGTAACGTTTAGGTTCTCTGTCTACTGAGGCTTTACAGGTGAAACTAGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACCGCTACCCTGTCATGGCAAAGAACTTCAATTACACTCTGTCGCTTAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9658#0 CGGGTTCAAGGTCGTTGAAATGGAATGGCGGGTGGCTTTGAATGAACTTTACGCCTTTAT 60 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 CTTGCACTCATCACTAAGATGCCTTTATGCTGCGGTGGAATCGGAACACCTAGAGAACCG 120 consensus_9658#1 CTCTCGCTCATCACTAAGATGCCTTTATGCTGCGGTGGAATCGGAACACCTAGAGAACCG 60 ** * ****************************************************** consensus_9658#0 TCTGCAGAGGAAAAAGAAAAACTTAAGACTCTGTTAGAAAGCAAGCTGGAGTCTCATATC 180 consensus_9658#1 TCTGCAGAGGAAAAAGAAAAACTTAAGACTCTG----AAAGCAAGCTGGAGTCTCATATC 116 ********************************* *********************** consensus_9658#0 GGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAACA 240 consensus_9658#1 GGACGGAAACCTCGTTCATTTGAAATCGTCCAGATCACTAGTCAGGTAGTCGCTGGAACA 176 ************************************************************ consensus_9658#0 AATCACTTCGTCAAGGT-------------------------------------GAAACT 263 consensus_9658#1 AATCACTTCGTCAAGGTAACGTTTAGGTTCTCTGTCTACTGAAGCTTTACAGGTGAAACT 236 ***************** ****** consensus_9658#0 AGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACCGCTACCCTGTCATGGCAAAGA 323 consensus_9658#1 AGACAATGGCGAGTATATTCATGCTCGAATTTTCGAACCGCTACCCTGTCATGGCAAAGA 296 ************************************************************ consensus_9658#0 ACTTCAATTACACTCTGTCGTTAAAGACAAAAAGGAAAGTGATGCGTTGGAATATTTCTG 383 consensus_9658#1 ACTTCAATTACACTCTGTCGTTAAA----------------------------------- 321 ************************* consensus_9658#0 AAACTCGATTTTCATGCCCACCACTTGTTAACTTATATTCCTGTCTTTTATAATTTATTA 443 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 ATATACTTTTGATGCTTATAAAAAAAA 470 consensus_9658#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||