These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9660#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1710 fasta sequence [AAAACCACCCATCGTCTGTCCCAGTTTGGTACTCTCTTTGCCATATTGTACTGGGTGTAAATAATGTTGGGTAGAGAAGTAACCAAGCCTGCATAATTTTGTTCAGTAGAAAAAGATGGTTGATAATCAAATCCG-ATCGTTGTTA-CCCGGA-AGGGGGAATC-AAGATAACCGG-AAGAAAATACA-GCATCATCTCATCACAGGTAACCTCCAACATACCTCACTAGAGAATACATAGTCGCTAAAGAAACAAGTAGAATTGATGATATTCAGTCATTTGTCTTTCTTCATACGTACGCTCAATAAGTATAATAATAGAATAATGCCGGAAGACAAAGCCGTCAAATTGTAATATTAACAATAATAATAATAATACATGTGATTATAAAATACAGAGATAGAAGAGGAATTACGATAGCCAAGCATGTGAATGAACAAATAAACAAATATATGAGTCAATAATTTTGATTGGATTTCCACAATTAGCTGAGATTAAACTTGAGTTTACACTGTGAATATCACAGAATGGGATGTGGAGGATAGATTGAGCAAGATAAATAAAAATAGATTTGGTACACAATAACTAAATATGTATAAATCTTGAAAAAGAAAGTATGTGTGTGTGTGTTTTTGATCAAGTGCGGATTCAGTTGAAAGAGGATAAAGACAGTGAAAGAACTCTTGAGTCGATTAGAAATTAATAGAAAAAATAGAATATGATGATTATATTAAAAAATT-AATCATAATAAATCGTCAATAAACTCTTTATACTGTTGGACGTGACTAGAATTATGCAATGACGACAACTCTCTAGGCAAATTCCTCTCATTCATGATTAAGTTACAAGAAGAGTTTATTATATGAGGTGATGATGACGACGACGATGATGTTGATGTAATGTCATGTTTGGCTTGATCATCAGTGAGTAAAGATGACTGATCAATAACTATCACTGTAGAATTACCATTCTTAGGAATCATTGAATTAAAATTATAAAATGCATTATCACCTTCACGTATATCTTTTGATGGCTGCCCACATTGTTGAAAGTTCACATCGATATGACTGACTTGTGGTTGAGTAGTAACAGAGTCTGGTGCTGATGGAAGTAGCGGTGGACATCGAACAATATTTAATTTATTCGAATGGGAATTACCTTGAGGAATTATAGGAAATTTTGGATTAAGTTGAGTGCGCTTCTCAGTACTAACTGTGG-AATTATTAATG-TAGTAGTTGGTGCAAGTGTAAGTGTTTGTAGATTATTAGATGAATAAGTGTAAACTGAAGACTGACCTATTAACGGATTGATTTGAAGTAATGACTCTGCTGAAGGGTGTATGGATCCGATTGATTCGGAGCGATTTTGACTATCATTGGTACTACAATCTGTATAAATTGGTGAAGTATCACACTGTAATTTTCGACTGCTAACGGAAGACATTTCAGTAGTCTGGTTAAAAATATTAGTTAGGACAGAATCCATGAGAAATGCCATTTTCTCAGGTTTACAGCTCTCTTCAATCCATTTTATCACTGATGCTGAGAGGTCAGTAAAAGAACTGAATACAATATAATTGTCAAATGAACGGAACATAGTGTCAAAAAACACTCGAAACACTTCTAGCTTTGTATCATCTGAAATCGGCTCAACAGACCTACATTCATAATTTGGACCTGTTTTGAACTATTTTCTCATAATTCAAGCCTAGTGTT] [-] EMBL AW497749 [AAAACCACCCATCGTCTGTCCCAGTTTGGTACTCTCTTTGCCATATTGTACTGGGTGTAAATAATGTTGGGTAGAGAAGTAACCAAGCCTGCATAATTTTGTTCAGTAGAAAAAGATGGTTGATAATCAAATCCG ATCGTTGTTACCCCGGACAGGGGGAATC AAGATAACCGG AAGAAAATACA GCATCATCTCATCACAGGTAACCTCCAACATACCTCACTAGAGAATACATAGTCGCTAAAGAAACAAGTAGAATTGATGATATTCAGTCATTTGTCTTTCTTCATACGTACGCTCAATAAGTATAATAATAGAATAATGCCGGAAGACAAAGCCGTCAAATTGTAATATTAACAATAATAATAATAATACATGTGATTATAAAATACAGAGATAGAAGAGGAATTACGATAGCCAAGCATGTGAATGAACAAATAAACAAATATA ] [+] EMBL CD169669 [ TAATCAAATACGAATCGTTGTTA ACCAGA AGGAGAAATCAAAGATAACCGGAAAGAAAATACAGGCATCATCTCATCACAGGTAACCTCCAACATACCTCACTAGAGAATACATAGTCGCTAAAGAAACAAGTAGAATTGATGATATTCAGTCATTTGTCTTTCTTCATACGTACGCTCAATAAGTATAATAATAGAATAATGCCGGAAGACAAAGCCGTCAAATTGTAATATTAACAATAATAATAATAATACATGTGATTATAAAATACAGAGATAGAAGAGGAATTACGATAGCCAAGCATGTGAATGAACAAATAAACAAATATATGAGTCAATAATTTTGATTGGATTTCCACAATTAGCTGAGATTAAACTTGAGTTTACACTGTGAATATCACAGAATGGGATGTGGAGGATAGATTGAGCAAGATAAATAAAAATAGATTTGGTACACAATAACTAAATATGTATAAATCTTGAAAAAGAAAGTATGTGTGTGTGTGTTTTTGATCAAGTGCGGATTCAGTTGAAAGAGGATAAAGACAGTGAAAGAACTCTTGAGTCGATTCGAAATTAATAGAAAAAATAGAATATGATGATTATATTAAAAAATTAAATCAT ATAAATCGTCAAT ] [+] EMBL CD201818 [ GAATTACGATAGCCAAGCATGTGAATGAACAGATAAACAAATATATGAGTCAATAATTTTGATTGGATTTCCACAATTAGCTGAGATTAAACTTGAGTTTACACTGTGAATATCACAGAATGGGATGTGGAGGATAGATTGAGCAAGATAAATAAAAATAGATTTGGTACACAATAACTAAATATGTATAAATCTTGAAAAAGAAAGTATGTGTGTGTGTGTTTTTGATCAAGTGCGGATTCAGTTGAAAGAGGATAAAGACAGTGAAAGAACTCTTGAGTCGATTAGAAATTAATAGAAAAAATAGAATATGATGATTATATTAAAAAATT AATCATAATAAATCGTCAATAAACTCTTTATACTGTTGGACGTGACTAGAATTATGCAATGACGACAACTCTCTAGGCAAATTCCTCTCATTCATGATTAAGTTACAAGAAGAGTTTATTATATGAGGTGATGATGACGACGACGATGATGTTGATGTAATGTCATGTTTGGCTTGATCATCAGTGAGTAAAGATGACTGATCANNTACTATCACTGTAGAATTACCATTCTT ] [+] EMBL CD194958 [ GTTGAAAGAGGATAAAGACAGTGAAAGAACTCTTGAGTCGATTAGAAATTAATAGAAAAAATAGAATATGATGATTATATTAAAAAATT AATCATAATAAATCGTCAATAAACTCTTTATACTGTTGGACGTGACTAGAATTATGCAATGACGACAACTCTCCAGGCGAATTCCTCTCATTCATGATTAAGTTACAAGAAGAGTTTATTATATGAGGTGATGATGACGACGACGATGATGTTGATGTAATGACATGTTTGGCTTGATCATCAGTGAGTAAAGATGACTGATCAATAACTATCACTGTAGAATTACCATTCTTAGGAATCATTGAATTAAAATTATAAAATGCATTATCACCTTCACGTATATCTTTTGATGGCTGCCCACATTGTTGAAAGTTCACATCGATATGACTGACTTGTGGTTGAGTAGTAACAGAGTCTGGTGCTGATGGAAGTAGCGGTGGACATCGAACAATATTTAATTTATTCGAATGGGAATTACCTTGAGGAATTATANNGAATTNTGGATTAAGTTGAGTGCGCTTCTCAGTACTAACTGTGGAAATTATTAATG TAGTAGTTGGTGCAAGTGTAAGTGTTTGTAGATAATTAGATGAATNAGTGTAAACTGAAGACTGACCTATTAACGGATTGATT ] [+] EMBL CD194922 [ GTTGAAAGAGGATAAAGACAGTGAAAGAACTCTTGAGTCGATTAGAAATTAATAGAAAAAATAGAATATGATGATTATATTAAAAAATT AATCATAATAAATCGTCAATAAACTCTTTATACTGTTGGACGTGACTAGAATTATGCAATGACGACAACTCTCTAGGCAAATTCCTCTCATTCATGATTAAGTTACAAGAAGAGTTTATTATATGAGGTGATGATGACGGCGACGATGATGTTGATGTAATGTCATGTTTGGCTTGATCATCAGTGAGTAAAGATGACTGATCAATAACTATCACTGTAGAATTACCATTCTTAGGTATCATTGAATTAAAATTATAAAATGCATTATCACCTTCACGTATATCTTTTGATGGCTGCCCACATTGTTGAAAGTTCACATCGATATGACTGACTTGTGGTTGAGTAGTAACAGAGTCTGGTGCTGATGGAAGTAGCGGTGGACATCGAACAATATTTAATTTATTCGAATGGGAATTACCTTGAGGAATTATAGGAAATTTTGGATTAA ] [+] EMBL CD123211 [ TTTGATGGCTGCCCACATTGTTGAAAGTTCACATCGATATGACTGACTTGTGGTTGAGTAGTAACAGAGTCTGGTGCTGATGGAAGTAGCGGTGGACATCGAACAATATTTAATTCATTCGAATGGGAATTACCTTGAGGAATTATAGGAAATTTTGGATTAAGTTGAGTGCGCTTCTCAGTACTAACTGTGG AATTATTAATGTTAGTAGTTGGTGCAAGTGTAAGTGTTTGTAGATTATTAGATGAATAAGTGTAAACTGAAGACTGACCTATTAACGGATTGATTTGAAGTA ] [-] EMBL CD190979 [ ACTGTGG AATTATTAATGTTAGTAGTTGGTGCAAGTGTAAGTGTTTGTAGATTATTAGATGAATAAGTGTAAACTGAAGACTGACCTATTAACGGATTGATTTGAAGTAATGACTCTGCTGAAGGGTGTATGGATCCGATTGATTCGGAGCGATTTTGACTATCATTGGTACTACAATCTGTATAAATTGGTGAAGTATCACACTGTAATTTTCGACTGCTAACGGAAGACATTTCAGTAGTCTGGTTAAAAATATTAGTTAGGACAGAATCCATGAGAAATGCCATTTTCTCAGGTTTACAGCTCTCTTCAATCCATTTTATCACTGATGCTGAGAGGTCAGTAAAAGAACTGAATACAATATAATTGTCAAATGAACGGAACATAGTGTCAAAAAAC ] [+] EMBL CD178185 [ ATGGATCCGATAGATTCGGAGCGATTTTGACTATCATTGGTACTACAGTCTGTATAAATTGGTGAAGTATTACACTGTAATTTTCGACTGCTAACGGAAGACATTTCAGTAGTCTGGTTAAAAATATTAGTTAGGACAGAATCCATGAGAAATGCCATTTTCTCAGGTTTACAGCTCTCTTCAATCCATTTTATCACTGATGCTGAGAGGTCAGTAAAAGAACTGAATACAATATAATTGTCAAATGAACGGAACATAGTGTCAAAAAACACTCGAAACACTTCTAGCTTTGTATCATCTGAAATCGGCTCAACAGACCTACATTCATAATTTGGACCTGTTTTGAACTATTTTCTCATAATTCAAGCCTAGTGTT] consensusID : consensus_9660#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [CTAGAGAATACATAGTCGCTAAAGAGACAAGTAGAATTGATGATATTCAGTCATTTGTCTTTCTTCATACGTACGCTCAATAAGTATAATAATAGAATAATGCCGGAAGACAAAGCCGTCAAATTGTAATATTAACAATAATAATAATAATCGAAAGCAGTTTACCATGTAAACACCATTGTACATCGACCAGAACTTCCGTTTTGAGTTGGTATTTTTTATGATTCATAACTTTATATTAGTTTGATCATTTCATTTTGTTTTCTTTTCACCGGTATATTTGACTTATTATCTTGGTAAAATAATTTTGTTTTTTTTCTACGAACTATT] [-] EMBL CD146429 [CTAGAGAATACATAGTCGCTAAAGAGACAAGTAGAATTGATGATATTCAGTCATTTGTCTTTCTTCATACGTACGCTCAATAAGTATAATAATAGAATAATGCCGGAAGACAAAGCCGTCAAATTGTAATATTAACAATAATAATAATAATCGAAAGCAGTTTACCATGTAAACACCATTGTACATCGACCAGAACTTCCGTTTTGAGTTGGTATTTTTTATGATTCATAACTTTATATTAGTTTGATCATTTCATTTTGTTTTCTTTTCACCGGTATATTTGACTTATTATCTTGGTAAAATAATTTTGTTTTTTTTCTACGAACTATT] consensusID : consensus_9660#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence [TATAGTTTAGGACAGAATCCATGAGAAATGCCATTTCTCAGGTTTACAGCTCTCTTCAATCCATTTTATCACTGATGCTGAGAGGTCAGTAAAAGAACTGAATACAATATAATTGTCAAATGAACGGAACATAGTGTCAAAAAACACTCGAAACACTTCTAGCTTTGTATCATCTGAAATCGGCTCAACAGACCTACATTCATAATTTGGACTGTTTTGAACTATTTTCTCATAATTCCTGAATGTAAGAAACAACTTCGTTGAGGACTTACAAGCATAGTATTCGAAGAGCTTTAACCTCCTTT] [-] EMBL CD181679 [TATAGTTTAGGACAGAATCCATGAGAAATGCCATTTCTCAGGTTTACAGCTCTCTTCAATCCATTTTATCACTGATGCTGAGAGGTCAGTAAAAGAACTGAATACAATATAATTGTCAAATGAACGGAACATAGTGTCAAAAAACACTCGAAACACTTCTAGCTTTGTATCATCTGAAATCGGCTCAACAGACCTACATTCATAATTTGGACTGTTTTGAACTATTTTCTCATAATTCCTGAATGTAAGAAACAACTTCGTTGAGGACTTACAAGCATAGTATTCGAAGAGCTTTAACCTCCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9660#0 AAAACCACCCATCGTCTGTCCCAGTTTGGTACTCTCTTTGCCATATTGTACTGGGTGTAA 60 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 ATAATGTTGGGTAGAGAAGTAACCAAGCCTGCATAATTTTGTTCAGTAGAAAAAGATGGT 120 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 TGATAATCAAATCCGATCGTTGTTACCCGGAAGGGGGAATCAAGATAACCGGAAGAAAAT 180 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 ACAGCATCATCTCATCACAGGTAACCTCCAACATACCTCACTAGAGAATACATAGTCGCT 240 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 AAAGAAACAAGTAGAATTGATGATATTCAGTCATTTGTCTTTCTTCATACGTACGCTCAA 300 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 TAAGTATAATAATAGAATAATGCCGGAAGACAAAGCCGTCAAATTGTAATATTAACAATA 360 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 ATAATAATAATACATGTGATTATAAAATACAGAGATAGAAGAGGAATTACGATAGCCAAG 420 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 CATGTGAATGAACAAATAAACAAATATATGAGTCAATAATTTTGATTGGATTTCCACAAT 480 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 TAGCTGAGATTAAACTTGAGTTTACACTGTGAATATCACAGAATGGGATGTGGAGGATAG 540 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 ATTGAGCAAGATAAATAAAAATAGATTTGGTACACAATAACTAAATATGTATAAATCTTG 600 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 AAAAAGAAAGTATGTGTGTGTGTGTTTTTGATCAAGTGCGGATTCAGTTGAAAGAGGATA 660 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 AAGACAGTGAAAGAACTCTTGAGTCGATTAGAAATTAATAGAAAAAATAGAATATGATGA 720 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 TTATATTAAAAAATTAATCATAATAAATCGTCAATAAACTCTTTATACTGTTGGACGTGA 780 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 CTAGAATTATGCAATGACGACAACTCTCTAGGCAAATTCCTCTCATTCATGATTAAGTTA 840 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 CAAGAAGAGTTTATTATATGAGGTGATGATGACGACGACGATGATGTTGATGTAATGTCA 900 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 TGTTTGGCTTGATCATCAGTGAGTAAAGATGACTGATCAATAACTATCACTGTAGAATTA 960 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 CCATTCTTAGGAATCATTGAATTAAAATTATAAAATGCATTATCACCTTCACGTATATCT 1020 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 TTTGATGGCTGCCCACATTGTTGAAAGTTCACATCGATATGACTGACTTGTGGTTGAGTA 1080 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 GTAACAGAGTCTGGTGCTGATGGAAGTAGCGGTGGACATCGAACAATATTTAATTTATTC 1140 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 GAATGGGAATTACCTTGAGGAATTATAGGAAATTTTGGATTAAGTTGAGTGCGCTTCTCA 1200 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 GTACTAACTGTGGAATTATTAATGTAGTAGTTGGTGCAAGTGTAAGTGTTTGTAGATTAT 1260 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 TAGATGAATAAGTGTAAACTGAAGACTGACCTATTAACGGATTGATTTGAAGTAATGACT 1320 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 CTGCTGAAGGGTGTATGGATCCGATTGATTCGGAGCGATTTTGACTATCATTGGTACTAC 1380 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 AATCTGTATAAATTGGTGAAGTATCACACTGTAATTTTCGACTGCTAACGGAAGACATTT 1440 consensus_9660#2 ------------------------------------------------------------ consensus_9660#1 ------------------------------------------------------------ consensus_9660#0 CAGTAGTCTGGTTAAAAATATTAGTTAGGACAGAATCCATGAGAAATGCCATTTTCTCAG 1500 consensus_9660#2 ------------------TATAGTTTAGGACAGAATCCATGAGAAATGCCATTT-CTCAG 41 consensus_9660#1 --------CTAGAGAATACATAG-TCGCTAAAGAGACAAGTAGAATTGATGATA-TTCAG 50 ** * * *** * * **** ** * **** consensus_9660#0 GTTTACAGCTCTCTTCA---ATCCATTTTATCACTGATGCTGAGAGGTCAGTAAAAGAAC 1557 consensus_9660#2 GTTTACAGCTCTCTTCA---ATCCATTTTATCACTGATGCTGAGAGGTCAGTAAAAGAAC 98 consensus_9660#1 TCATTTGTCTTTCTTCATACGTACGCTCAATAAGT-ATAATAATAGAATAATGCCGGAAG 109 * ** ****** * * * ** * * ** * * ** * * *** consensus_9660#0 TGAATACAATATAATTGTCAAATGAACGGAACATAGTGTCAAAAAACACTCGAAACACTT 1617 consensus_9660#2 TGAATACAATATAATTGTCAAATGAACGGAACATAGTGTCAAAAAACACTCGAAACACTT 158 consensus_9660#1 ACAAAGCCGTCAAATTGTAATATTAACA----ATAATAATAATAATCGAAAGCAGT-TTA 164 ** * * ****** * ** *** *** * ** ** * * * * consensus_9660#0 CTAGCTTTGTATCATCTGAAATCGGCTCAACAGACCTACATTCATAATTTGGACCTGTTT 1677 consensus_9660#2 CTAGCTTTGTATCATCTGAAATCGGCTCAACAGACCTACATTCATAATTTGGAC-TGTTT 217 consensus_9660#1 CCATGTAAACACCATTGTACATCGACCAGA---ACTTCCGTTTTGAGTTGGTATTTTTTA 221 * * * * *** * **** * * ** * * ** * ** * * * ** consensus_9660#0 TGAACTAT---TTTCTCATAATTCAAGCCTAGTGTT------------------------ 1710 consensus_9660#2 TGAACTAT---TTTCTCATAATTC---CTGAATGTAA-GAAACAACTTCGTTGAGGACTT 270 consensus_9660#1 TGATTCATAACTTTATATTAGTTTGATCATTTCATTTTGTTTTCTTTTCACCGGTATATT 281 *** ** *** * ** ** * * consensus_9660#0 ------------------------------------------------- consensus_9660#2 ACAAGCATAGTATTCGAAGAGC--TTTAACCTCCTTT------------ 305 consensus_9660#1 TGACTTATTATCTTGGTAAAATAATTTTGTTTTTTTTCTACGAACTATT 330 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||