These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 752 fasta sequence [CTCCGAGCCAANAATTCGGCACGAGGACAGATCTGAAACCATCTCACTAAGATGTTTCTTTAATGGGAAATTCTGGAACCTGTTTAAACGATTGCCTCGACGTCTATGCTCCTGAGAAAGTTCTTTTTGCCATAAGCTTTTGTACTGTACTTTTGGGTTTCGTTCTTATTATTTCAGGGGTTTGTATTGCTCAGCTTAGTGAGGGACTGCATGCTCATTTGTCCATATCATATGCAGCTGTACCTATTGCGTTTGCTGGCTGTGTTACACTACTAATAGCCATTTTTAGGATTGTTTCTACAAGTAGACGTTTAAGGGAAATGAATTTAACCCTTTGTGAGTTTGAAAAACAATGGAATCAAGAAGAGTCTCTGTCCTACAATCTTCAAGGAAACGCATATAATGCATTTTCTTTTG-TTAATAAATCCCCTGACAATTTTAGCCCTAACTCACTTTCGGATAAGAAAGTTGATCATCTACCCATACCTGTAACAAACTATCATCAAAGATTGCCAATGCCTCCAAGACGAGCTGTTTTGTATTAAGCCAACTCAACTTTTAATGTAACACTGATTTAAGAGTTCTCTGTATGTTAAACAACTTTTATTTCAAGTTTCATTATTTCTATTGCCATAATCCGTTTTAGAATTTTATGTGGTGGCACTGAGACATTATTGTGCATGCACTGTTCCCCAACTCCCAAATTTGTGTTAT-ATTAACCCACCAGTGATAATTTGGTTGAATAAAGTAAA] [+] EMBL CD081369 [CTCCGAGCCAANAATTCGGCACGAGGACAGATCTGAAACCATCTCACTAAGATGTTTCTTTAATGGGAAATTCTGGAACCTGTTTAAACGATTGCCTCGACGTCTATGCTCCTGAGAAAGTTCTTTTTGCCATAAGCTTTTGTACTGTACTTTTGGGTTTCGTTCTTATTATTTCAGGGGTTTGTATTGCTCAGCTTAGTGAGGGACTGCATGCTCATTTGTCCATATCATATGCAGCTGTACCTATTGCGTTTGCTGGCTGTGTTACACTACTAATAGCCATTTTTAGGATTGTTTCTACAAGTAGACGTTTAAGGGAAATGAATTTAACCCTTTGTGAGTTTGAAAAACAATGGAATCAAGAAGAGTCTCTGTCCTACAATCTTCAAGGAAACGCATATAATGCATTTTCTTTTG TTAATAAATCCCCTGACAATTTTAGCCCTAACTCACTTTCGGATAAGAAAGTTGATCATCTACCCATACCTGTAACAAACTATCATCAAAGATTGCCAATGCCTCCAAGACGAGCTGTTTTGTATTAAGCCAACTCAACTTTTAATGTAACACTGATTTAAGAGTTCTCTGTATGTTAAACAACTTTTATTTCAAGTTTCATTATTTCTATTGCCATAATCCGTTTTAG ATTTTATGTGGTGGCACTGAGACATTATTGTGCATGCACTGTTCCCCAACTCCCAAATTTGTGTTAT ATTAACCCACCAGTGATAATTTGGTTGAATAAAGTAA ] [-] EMBL CD075203 [ AGCTTTTGTACTGTACTTNTGGGTTTCGTTCTTATTATTTCAGGGGTTTGTATTGCTCAGCTTAGTGAGGGACTGCATGCTCATTTGTCCATATCATATGCAGCTGTACCTATTGCGTTTGCTGGCTGTGTTACACTACTAATAGCCATTTTTAGGATTGTTTCTACAAGTAGACGTTTAAGGGAAATGAATTTAACCCTTTGTGAGTTTGAAAAACAATGGAATCAAGAAGAGTCTCTGTCCTACAATCTTCAAGGAAACGCATATAATGCATTTTCTTTTG TTAATAAATCCCCTGACAATTTTAGCCCTAACTCACTTTCGGATAAGAAAGTTGATCATCTACCCATACCTGTAACAAACTATCATCAAAGATTGCCAATGCCTCCAAGACGAGCTGTTTTGTATTAAGCCAACTCAACTTTTAATGTAACACTGATTTAAGAGTTCTCTGTATGTTAAACAACTTTTATTTCAAGTTTCATTATTTCTATTGCCATAATCCGTTTTAGAATTTTATGTGGTGGCACTGAGACATTATTGTGCATGCACTGTTCCCAAACTTCCAAATTTGTGTTATAATTAACCCACCAGTGATAATTTGGTTGAATAAAGTAAA] [-] EMBL CD069163 [ TACTAATAGCCATTTTTAGGATTGTTTCTACAAGTAGACGTTTAAGGGAAATGAATTTAACCCTTTGTGAGTTTGAAAAACAATGGAATCAAGAAGAGTCTCTGTCCTACAATCTTCAAGGAAACGCATATAATGCATTTTCTTTTG TTAATAAATCCCCTGACAATTTTAGCCCTAACTCACTTTCGGATAAGAAAGTTGATCATCTACCCATACCTGTAACAAACTATCATCAAAGATTGCCAATGCCTCCAAGACGAGCTGTTTTGTATTAAGCCAACTCAACTTTTAATGTAACACTGATTTAAGAGTTCTCTGTATGTTAAACAACTTTTATTTCAAGTTTCATTATTTCTATTGCCATAATCCGTCTTAGAATTTT ] [+] EMBL CD146048 [ AACGTTTTTACCGCATTTTCTTTTGATTAATAAATCCCCTGACAATTTTAGCCCTAACTCACTTTCGGATAAGAAAGTTGATCATCTACCCATACCTGTAACAAACTATCATCAAAGATTGCCAATGCCTCCAAGACGAGCTGTTTTGTATTAAGCCAACTCAACTTTTAATGTAACACTGATTTAAGAGTTCTCTGTATGTTAAACAACTTTTATTTCAAGTTTCATTATTTCTATTGCCATAATCCGTTTTAGAATTTTATGTGGTGGCACTGAGACAT ] [-] EMBL CD154874 [ AGCTGTTTTGTATTAAGCCAACTCAACTTTTAACGTAACACTGATTTAAGAGTTCTCTGTATGTTAAACAACTTTTATTTCAAGTTTCATTATTTCTATTGCCATAATCCGTTTTAGAATTTTATGTGGTGGCACTGAGACATT ] consensusID : consensus_9663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 691 fasta sequence [CGAGGCCACGAATTCGGCACGAGGTTTTTCATTCATGGCCTTCTCGTTCCTCGTTTAGCTTCAATCGTAGAGATGAATGCAGAAACCTCTCAACCAGTTGTCGAAATCAAAAGCCTAATAACTGGTCTTTGTGTTCTATGAACAACAAACCAAATCCCGTTCTACTCTGCTGGCCGACTGATGTTCAAATACACCCTTATCACATAAGAATATGTCTGGACACTCATATTGCTGTTTTTGTTTACAAAGTACCTAGCAGTATCATTCTTTATCAGGCAAGAAAGATAATTTATTCAAGCAACATATGCATCCCGTATTTTTGAAAGCTAAGCTTTACATTCAAGCGTTTACTTCAAAGTCTAATTAGTGGATCTTGAAAGAATTATTTCAGAAAGTAATTAGTATTTGGCGAACCTGACACTATCATTAATCTCCATCGTCAAGTGTATACATTTATGGTCTCTGTGTTTTTGTACTTATTTCTGTTCACTAGCTTTTTCTCGTATTCACATCACGTATTTCTACTACATTTACTAATTTAGATCTGAAACCATCTCACTAAGATGTTTCTTTAATGGGAAATTCTGGAACCTGTTTAAACGATTGCCCCGGCGTCTATGCTCCTGAG-AAGTTCTTTTTGCCATAAGCTTTTGTACTGTACTTTTGGGTTTCGTTCTTATTATTTCAGGNG] [+] EMBL CD083728 [CGAGGCCACGAATTCGGCACGAGGTTTTTCATTCATGGCCTTCTCGTTCCTCGTTTAGCTTCAACTTTCGATATGAATGCAGAAACCTCTCAACCAGTTGTCGAAATCAAAAGCCTAATAACTGGTCTTTGTGTTCTATGAACAACAAACCAAATCCCGTTCTACTCTGCTGGCCGACTGATGTTCAAATACACCCTTATCACATAAGAATATGTCTGGACACTCATATTGCTGTTTTTGTTTACAAAGTACCTAGCAGTATCATTCTTTATCAGGCAAGAAAGATAATTTATTCAAGCAACATATGCATCCCGTATTTTTGAAAGCTAAGCTTTACATTCAAGCGTTTACTTCAAAGTCTAATTAGTGGATCTTGAAAGAATTATTTCAGAAAGTAATTAGTATTTGGCGAACCTGACACTATCATTAATCTCCATCGT ] [+] EMBL CD117504 [ TCGTAGAGATGAATGCAGAAACCTCTCAACCAGTTGTCGAAATCAAAAGCCTAATAACTGGTCTTTGTGTTCTATGAACAACAAACCAAATCCCGTTCTACTCTGCTGGCCGACTGATGTTCAAATACACCCTTATCACATAAGAATATGTCTGGACACTCATATTGCTGTTTTTGTTTACAAAGTACCTAGCAGTATCATTCTTTATCAGGCAAGAAAGATAATTTATTCAAGCAACATATGCATCCCGTATTTTTGAAAGCTAAGCTTTACATTCAAGCGTTTACTTCAAAGTCTAATTAGTGGATCTTGAAAGAATTATTTCAGAAAGTAATTAGTATTTGGCGAACCTGACACTATCATTAATCTCCATCGTCAAGTGTATACATTTATGGTCTCTGTGTTTTTGTACTTATTTCTGTTCACTAGCTTTTTCTCGTATTCACATCACGTATTTCTACTACATTTACTAATTTAGATCTGAAACCATCTCACTAAGATGTTTCTTTAATGGGAAATTCTGGAACCTGTTTAAACGATTGCCCCGGCGTCTATGCTCCTGAG AAGTTCT ] [+] EMBL CD116853 [ TCGTAGAGATGAATGCAGAAACCTCTCAACCAGTTGTCGAAATCAAAAGCCTAATAACTGGTCTTTGTGTTCTATGAACAACAAACCAAATCCCGTTCTACTCTGCTGGCCGACTGATGTTCAAATACACCCTTATCACATAAGAATATGTCTGGACACTCATATTGCTGTTTTTGTTTACAAAGTACCTAGCAGTATCATTCTTTATCAGGCAAGAAAGATAATTTATTCAAGCAACATATGCATCCCGTATTTTTGAAAGCTAAGCTTTACATTCAAGCGTTTACTTCAAAGTCTAATTAGTGGATCTTGAAAGAATTATTTCAGAAAGTAATTAGTATTTGGCGAACCTGACACTATCATTAATCTCCATCGTCAAGTGTATACATTTATGGTCTCTGTGTTTTTGTACTTATTTCTGTTCACTAGCTTTTTCTCGTATTCACATCACGTATTTCTACTACATTTACTAATTTAGATCTGAAACCATCTCACTAAGATGTTTCTTTAATG ] [+] EMBL CD117516 [ TCGTAGAGATGAATGCACAAACCTCTCAACCAGTTGTCGAAATCAAAAGCCTAATAACTGGTCTTTGTGTTCTATGAACAACAAACCAAATCCCGTTCTACTCTGCTGGCCGACTGATGTTCAAATACACCCTTATCACATAAGAATATGTCTGGACACTCATATTGCTGTTTTTGTTTACAAAGTACCTAGCAGTATCATTCTTTATCAGGCAAGAAAGATAATTTATTCAAGCAACATATGCATCCCGTATTTTTGAAAGCTAAGCTTTACATTCAAGCGTTTACTTCAAAGTCTAATTAGTGGATCTTGAAAGAATTATTTCAGAAAGTAATTAGTATTTGGCGAACCTGACACTATCATTAATCTCCATCGTCAAGTGTATACATTTATGGCCTCTGTGTTTTTGTACTTATTTCTGTTCACTAGCTTTTTCTCGTATTCACATCACGTATTTCTAC ] [+] EMBL CD181696 [ TAATCTCCATCGTCAAGTGTATACATTTATGGTCTCTGTGTTTTTGTACTTATTTCTGTTCACTAGCTTTTTCTCGCATTCACATCACGTATTTCTACTACATTTACTAATTTAGATCTGAAACCATCTCACTAAGATGTTTCTTTAATGGGAAATTCTGGAACCTGTTTAAACGATTGCCTCGACGTCTATGCTCCTGAGAAAGTTCTTTTTGCCATAAGCTTTTGTACTGTACTTTTGGGTTTCGTTCTTATTATTTCAGGNG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9663#0 CTCCGAGCCAANAATTCGGCACGAGGACAGATCTGAAACCATCTCACTAAGATGTTTCTT 60 consensus_9663#1 --CGAGGCCACGAATTCGGCACGAGGTT-------------TTTCATTCATGGCCTTCTC 45 * **** ************** * *** * * **** consensus_9663#0 TAATGGGAAATTCTGGAACCTGTTTAAACGATTGCCTCGACGTCTATGCTCCTGAGAAAG 120 consensus_9663#1 --------GTTCCTCGTTTAGCTTCAATCGTAGAGATGAATGCAGAAACCTCTCAACCAG 97 * ** * ** ** ** * * * * * ** * ** consensus_9663#0 TTCTTTTTGCCATAAGCTTTTGTACTGTACTTTTGGGTTTCGTTCTTATTATTTCAGGGG 180 consensus_9663#1 TTGTCGAAATCAAAAGCCTAATAACTG-GTCTTTGTGTTCTATGAACAACAAACCAAAT- 155 ** * ** **** * **** **** *** * * * ** consensus_9663#0 TTTGTATTGCTCAGCTTAGTGAGGGACTGCATGCTCATTTGTCCATATCATATGCAGCTG 240 consensus_9663#1 CCCGTTCTACTCTGCTGGCCGACTGAT---GTTCAAATACACCCTTATCACATAAGAATA 212 ** * *** *** ** ** * * ** ** ***** ** * consensus_9663#0 TACCTATTGCGTTTGCTGGCTGTGTTACACTACTAATAGCCATTTTTAGGATTGTTTCTA 300 consensus_9663#1 TGTCTGG-------------------ACACT-CATATTGCTGTTTTTG--------TTTA 244 * ** ***** * ** ** ***** * ** consensus_9663#0 CAAGTAGACGTTTAAGGGAAATGAATTTAACCCTTTGTGAGTTTGAAAAACAATGGAATC 360 consensus_9663#1 CA---AAGTACCTAGCAGTA------TCATTCTTTATCAGGCAAGAAAGATAATTTATTC 295 ** * ** * * * * * ** * **** * *** * ** consensus_9663#0 AAGAAGAGTCTCTGTCCTACAATCTTCAAGGAAACGCATATAATGCATTTTCTTTTGTTA 420 consensus_9663#1 AAGCAACATATGCATCCCGTATTTTTGAAAGCTAAGCTTTACATTCAAGCGTTTACTTCA 355 *** * * * *** * * ** ** * * ** * ** ** ** * * consensus_9663#0 ATAAATCCCCTGACAATTTTAGCCCTAACTCACTTTCGGATAAGAAAGTTGATCATCTAC 480 consensus_9663#1 AAGTCTAATTAGTGGATCTTGAAA--GAATTATTTCAGAAAGTAATTAGTATTTGGCGAA 413 * * * ** ** * * * ** * * * * * * * consensus_9663#0 CCATAC-CTGTAACAAACTATCATCAAAGATTGCCAATGCCTCCAAGACGAGCTGTTTTG 539 consensus_9663#1 CCTGACACTATCATTAATCTCCATCGTCAAGTGTATACATTTATGGTCTCTGTGTTTTTG 473 ** ** ** * * ** **** * ** * * * ***** consensus_9663#0 TATTAAGCCAACTCAACT--TTTAATGTAACACTGATTTAAGAGTTCTCTG-TATGTTAA 596 consensus_9663#1 TACTTATTTCTGTTCACTAGCTTTTTCTCGTATTCACATCACGTATTTCTACTACATTTA 533 ** * * * *** ** * * * * * * * * *** ** ** * consensus_9663#0 ACAACTTTTATTTCAAGTTTCATTATTTC--TATTGCCATAATCCG---TTTTAGAAT-- 649 consensus_9663#1 CTAATTTAGATCTGAAACCATCTCACTAAGATGTTTCTTTAATGGGAAATTCTGGAACCT 593 ** ** ** * ** * * * * ** * **** * ** * *** consensus_9663#0 -TTTATGTGGTGGCACTGAGACATTATTGTGCATGCACTGTTCCCCAACTCCCAAATTTG 708 consensus_9663#1 GTTTAAACGATTGCCCCGG--CGTCTATGCTCCTGAGAAGTTCTTTTTGCCATAAGCTTT 651 **** * * ** * * * * ** * ** **** * ** ** consensus_9663#0 TGTTATATTAACCCACCAGTGATAATTTGGTTGAATAAAGTAAA 752 consensus_9663#1 TGTACTGT--ACTTTTGGGTTTCGTTCTTATTATTTCAGGNG-- 691 *** * * ** ** * * ** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||