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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9664#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 681 fasta sequence
[CTCGCAGGCCAANAATTTGGCACGAGGTCTGAGTCGAATGATGGTGCTAGTGGAGGTGGACCTGTGCGCTTAACGTGTGGTCATGCTATATCACGAGATGCATTCAACTCTCTGGCTAGTGGAGATAAAAGTAGGATGAAATGTCCTTACTGTCCTGTGGAGACGTTTAAAAATCAAGTATTGGATCTGATATTCTAAAGAAAAGTCATCAACGTCTTATGTGTGTTTGTATAGACTTATCTACGCTCACACCATCACACTGGCGTATCATATATATTAAATATACTATAACAAGCTCGAAATCTCATATATTGATATAAACGAAGCTGTATTGTGATATGCTGACATGAAATACTACTCAGATATTGCCTGTTGTATTATTACACTGTAAGCTGTCTTCCTGTCATCCGCCTCCTATTAAAGTTTTTACTTGACTATTGCAAAAATAGAAACAGTTAACTGATTAGATCTATTTCATAGTTACACGTATCGTTTTCTTTTCGGATTATTTCATTTAGTCATATAGACAAGCTGCTGTGTACAAGTATTTGTTTATTTCTCCTGCCATGTCGTAATTGTGTGAGGCACTCCACATCTCTTCATATATATATATATATATATATATATATATATATATGCCTACAATTTAACTTATANTTTGTCATTGTAACACTAGCTTAT]
[+] EMBL CD080530 [CTCGCAGGCCAANAATTTGGCACGAGGTCTGAGTCGAATGATGGTGCTAGTGGAGGTGGACCTGTGCGCTTAACGTGTGGTCATGCTATATCACGAGATGCATTCAACTCTCTGGCTAGTGGAGATAAAAGTAGGATGAAATGTCCTTACTGTCCTGTGGAGACGTTTAAAAATCAAGTATTGGATCTGATATTCTAAAGAAAAGTCATCAACGTCTTATGTGTGTTTGTATAGACTTATCTACGCTCACACCATCACACTGGCGTATCATATATATTAAATATACTATAACAAGCTCGAAATCTCATATATTGATATAAACGAAGCTGTATTGTGATATGCTGACATGAAATACTACTCAGATATTGCCTGTTGTATTATTACACTGTAAGCTGTCTTCCTGTCATCCGCCTCCTATTAAAGTTTTTACTTGACTATTGCAAAAATAGAAACAGTTAACTGATTAGATCTATTTCATAGTTACACGTATCGTTTTCTTTTCGGATTATTTCATTTAGTCATATAGACAAGCTGCTGTGTACAAGTATTTGTTTATTTCTCCTGCCATGTCGTAATTGTGTGAGGCACTCCACATCTCTTCATATATATATATATATATATATATATATATATATATGCCTACAATTTAACTTATANTTTGTCATTGTAACACTAGCTTAT]
[-] EMBL CD112705 [ TGATGGTGCTAGTGGAGGTGGACCTGTGCGCTTAACGTGTGGTCATGCTATATCACGAGATGCATTCAACTCTCTGGCTAGTGGAGATAAAAGTAGGATGAAATGTCCTTACTGTCCTGTGGAGACGTTTAAAAATCAAGTATTGGATCTGATATTCTAAAGAAAAGTCATCAACGTCTTATGTGTGTTTGTATAGACTTATCTACGCTCACACCATCACACTGGCGTATCATATATATTAAATATACTATAACAAGCTCGAAATCTCATATATTGATATAAACGAAGCTGTATTGTGATATGCTGACATGAAATACTACTCAGATATTGCCTGTTGTATTATTACACTGTAAGCTGTCTTCCTGTCATCCGCCTCCTATTAAAGTTTTTACTTGACTATTGCAAAAATAGAAACAGTTAACTGATTAGATCTATTTCATAGTTACACGTATCGTTTTCTTTTCGGATTATTTCATTTAGTCATAT ]
[+] EMBL CD121087 [ CCTGTGCGCTTAACGTGTGGTCATGCTATATCACGAGATGCATTCAACTCTCTGGCTAGTGGAGATAAA AGGATGAAATGTCCTTACTGTCCTGTGGAGACGTTTAAAAATCAAGTATTGGATCTGATATTCTAAAGAAAAGTCATCAACGTCTTATGTGTGTTTGTATAGACTTATCTACGCTCACACCATCACACTGGCGTATCATATATATTAAATATACTATAACAAGCTCGAAATCTCATATATTGATATAAACGAAGCTGTATTGTGATATGCTGACATGAAATACTACTCAGATATTGCCTGTTGTATTATTACACTGTAAGCTGTCTTCCTGTCATCCGCCTCCTATTAAAGTTTTTACTTGACTATTGCAAAAATAGAAACAGTTAACTGATTAGATCTATTTCATAGTTACACGTATCGTTTTCTTTTCGGATTATTTCATTTA ]
[+] EMBL CD120944 [ CCTGTGCGCTTAACGTGTGGTCATGCTATATCACGAGATGCATTCAACTCTCTGGCTAGTGGAGATAAA AGGATGAAATGTCCTTACTGTCCTGTGGAGACGTTTAAAAATCAAGTATTGGATCTGATATTCTAAAGAAAAGTCATCAACGTCTTATGTGTGTTTGTATAGACTTATCTACGCTCACACCATCACACTGGCGTATCATATATATTAAATATACTATAACAAGCTCGAAATCTCATATATTGATATAAACGAAGCTGTATTGTGATATGCTGACAGGAAATACTACTCAGATATTGCCTGTTGTATTATTACACTGTAAGCTGTCTTCCTGTCATCCGCCTCCTATTAAAGTTTTTACTTGACTATTGCAAAAATAGAAACAGTTAACTGATTAGATCTATTTCATAGTTACACGTATCGTTTTCTTTTCGGATTATTTCATTTA ]
[-] EMBL CD095972 [ TTACTGTCCTGTGGAGACGTTTAAAAATCAAGTATTGGATCTGATATTCTAAAGAAAAGTCATCAACGTCTTATGTGTGTTTGTATAGACTTATCTACGCTCACACCATCACACTGGCGTATCATATATATTAAATATACTATAACAAGCTCGAAATCTCATATATTGATATAAACGAAGCTGTACTGTGATATGCTGACATGAAATACTACTCAGATATTGCCTGTTGTATTATTACACTGTAAGCT ]
[-] EMBL CD086208 [ TTACTGTCCTGTGGAGACGTTTAAAAATCAAGTATTGGATCTGATATTCTAAAGAAAAGTCATCAACGTCTTATGTGTGTTTGTATAGACTTATCTACGCTCACACCATCACACTGGCGTATCATATATATTAAATATACTATAACAAGCTCGAAATCTCATATATTGATATAAACGAAGCTGTATTGTGGTATGCTGACATGAAATACTACTCAGATATTGCCTGTTGTATTATTACAC ]
consensusID : consensus_9664#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 629 fasta sequence
[CGAATGATGGTGCTAGTGGAGGTGGACCTGTGCGCTTAACGTGTGGTCATGCTATATCACGAGATGCATTCAACTCTCTGGCTAGTGGAGATAAAAGTAGGATGAAATGTCCTTACTGTCCTGTGGAGACGTTTAAAAATCAAGTATTGGATCTGACATGAAATACTACTCAGATATTGCCTGTTGTATTATTACACTGTAAGCTGTCTTCCTGTCATCCGCCTCCTATTAAAGTTTTTACTTGACTATTGCAAAAATAGAAACAGTTAACTGATTAGATCTATTTCATAGTTACACGTATCGTGTTCTTTTCGGATTATTTCATTTAGTCATATAGACAAGCTGCTGTGTACAAGTATTTGTTTATTTCTCCTGCCCCCCCCCCCCTGTGTGAGGCACTCCACATCTCTTCATATATATATATATATATATATATATATATATATATATATATATATGCCTACAATTTAACTTATATTTTGTCATTGTAACACTAGCTTATTGTCATCGTTGTTCTTTTTATTATTGTCTTGTTTTTTCTGCTTTGAGTTCAATTTATTCTACTATCAAAATACAGCTGTTAAAGTATAAACCTATATATTCGTCATATATATATAAATATATATTCC]
[-] EMBL CD201082 [CGAATGATGGTGCTAGTGGAGGTGGACCTGTGCGCTTAACGTGTGGTCATGCTATATCACGAGATGCATTCAACTCTCTGGCTAGTGGAGATAAAAGTAGGATGAAATGTCCTTACTGTCCTGTGGAGACGTTTAAAAATCAAGTATTGGATCTGACATGAAATACTACTCAGATATTGCCTGTTGTATTATTACACTGTAAGCTGTCTTCCTGTCATCCGCCTCCTATTAAAGTTTTTACTTGACTATTGCAAAAATAGAAACAGTTAACTGATTAGATCTATTTCATAGTTACACGTATCGTGTTCTTTTCGGATTATTTCATTTAGTCATATAGACAAGCTGCTGTGTACAAGTATTTGTT ]
[-] EMBL AI026170 [ CTATTGCAAAAATAGAAACAGTTAACTGATTAGATCTATTTCATAGTTACACGTATCGTTTTCTTTTCGGATTATTTCATTTAGTCATACAGCCAAGCTGCTGTGTACAAGTATTTGTTTATTTCTCCTGCCCCCCCCCCCCTGTGTGAGGCACTCCACATCTCTTCATATATATATATATATATATATATATATATATATATATATATATATGCCTACAATTTAACTTATATTTTGTCATTGTAACACTAGCTTATTGTCATCGTTGTTCTTTTTATTATTGTCTTGTTTTTTCTGCTTTGAGTTCAATTTATTCTACTATCAAAATACAGCTGTTAAAGTATAAACCTATATATTCGTCATATATATATAAATATATATTCC]
consensusID : consensus_9664#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence
[CAAANGAAGTAATCTCTGAGTCGAATGATGGTGCTAGTGGAGGTGGACCTGTGCGCTTAACGTGTGGTCATGCTATATCACGAGATGCATTCAACTCTCTGGCTAGTGGAGATAAAAGCGTTTACGAGTTCCCTGATCTGAGAACGGTACAAAGACTCTGCGACCATTGACCAATAAGCTAACTATTCTGATGCATCCCAGCCCCGCTAAATAGAGTGAGAAGTCCAAGTCCAAAGTGATAAAATATATTCCGCAAGCAGCCAGAAGCACAAGCAACCAAAACAGGCACAAATCAAACGTATATATACCGCATA]
[-] EMBL CD139723 [CAAANGAAGTAATCTCTGAGTCGAATGATGGTGCTAGTGGAGGTGGACCTGTGCGCTTAACGTGTGGTCATGCTATATCACGAGATGCATTCAACTCTCTGGCTAGTGGAGATAAAAGCGTTTACGAGTTCCCTGATCTGAGAACGGTACAAAGACTCTGCGACCATTGACCAATAAGCTAACTATTCTGATGCATCCCAGCCCCGCTAAATAGAGTGAGAAGTCCAAGTCCAAAGTGATAAAATATATTCCGCAAGCAGCCAGAAGCACAAGCAACCAAAACAGGCACAAATCAAACGTATATATACCGCATA]
consensusID : consensus_9664#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence
[GGAATATATATTTATATATATATGACGAATATATAGGTTTATACTTTAACAGCTGTATTTTGATAGTAGAATAAATTGAACTCAAAGCAGAAAAAACAAGACAATAATAAAAAGAACAACGGTGACAATAAGCCAGTGTTACAATGACAAAATATAAGTCAAATTGTAGGCATATATATATATATATTATATGACGACATGTGGAGTGCCTCACACAATTACGACACGGCAG]
[+] EMBL AA999265 [GGAATATATATTTATATATATATGACGAATATATAGGTTTATACTTTAACAGCTGTATTTTGATAGTAGAATAAATTGAACTCAAAGCAGAAAAAACAAGACAATAATAAAAAGAACAACGGTGACAATAAGCCAGTGTTACAATGACAAAATATAAGTCAAATTGTAGGCATATATATATATATATTATATGACGACATGTGGAGTGCCTCACACAATTACGACACGGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9664#0 CTCGCAGGCCAANAATTTGGCACGAGGTCTGAGTCGAATGATGGTGCTAGTGGAGGTGGA 60
consensus_9664#1 ----------------------------------CGAATGATGGTGCTAGTGGAGGTGGA 26
consensus_9664#2 -------------CAAANGAAGTAATCTCTGAGTCGAATGATGGTGCTAGTGGAGGTGGA 47
consensus_9664#3 ------------------------------------------------------------
consensus_9664#0 CCTGTGCGCTTAACGTGTGGTCATGCTATATCACGAGATGCATTCAACTCTCTGGCTAGT 120
consensus_9664#1 CCTGTGCGCTTAACGTGTGGTCATGCTATATCACGAGATGCATTCAACTCTCTGGCTAGT 86
consensus_9664#2 CCTGTGCGCTTAACGTGTGGTCATGCTATATCACGAGATGCATTCAACTCTCTGGCTAGT 107
consensus_9664#3 ------------------------------------------------------------
consensus_9664#0 GGAGATAAAAGTAGGATGAAATGTCCTTACTGTCCTGTGGAGACGTTTAAAAATCAAGTA 180
consensus_9664#1 GGAGATAAAAGTAGGATGAAATGTCCTTACTGTCCTGTGGAGACGTTTAAAAATCAAGTA 146
consensus_9664#2 GGAGATAAAAGC--GTTTACGAGTTCC--CTGATCTG-AGAACGGTACAAAGACTCTGCG 162
consensus_9664#3 ------------------------------------------------------------
consensus_9664#0 TTGGATCTGATATTCTAAAGAAAAGTCATCAACGTCTTATGTGTGTTTGTATAGACTTAT 240
consensus_9664#1 TTGGATCTGA-------------------------------------------------- 156
consensus_9664#2 ACCA--TTGACC------------------------------------------------ 172
consensus_9664#3 ------------------------------------------------------------
consensus_9664#0 CTACGCTCACACCATCACACTGGCGTATCATATATATTAAATATACTATAACAAGCTCGA 300
consensus_9664#1 ------------------------------------------------------------
consensus_9664#2 ------------------------------------------------------------
consensus_9664#3 ------------------------------------------------------------
consensus_9664#0 AATCTCATATATTGATATAAACGAAGCTGTATTGTGATATGCTGACATGAAATA-CTACT 359
consensus_9664#1 ---------------------------------------------CATGAAATA-CTACT 170
consensus_9664#2 ---------------------------------------------AATAAGCTAACTATT 187
consensus_9664#3 ------------------------------------------------GGAATATATATT 12
** ** *
consensus_9664#0 CAGATAT---TGCCTGTTGTATTA--TTACACTGTAAGCTGTCTTCCTGTCATCCGCCTC 414
consensus_9664#1 CAGATAT---TGCCTGTTGTATTA--TTACACTGTAAGCTGTCTTCCTGTCATCCGCCTC 225
consensus_9664#2 CTGATGCA--TCCCAGCCCCGCTA--A-ATAGAGTGAGAAGTCCAAGTCCAAAGTG---- 238
consensus_9664#3 TATATATATATGACGAATATATAGGTTTATACTTTAACAGCTGTATTTTGATAGTAGAAT 72
** * * * * * * * *
consensus_9664#0 CTATTAAAGTTTTTACTTGACTATTGCAAAAATAGAAACAGTTAACTGATTAGATCTATT 474
consensus_9664#1 CTATTAAAGTTTTTACTTGACTATTGCAAAAATAGAAACAGTTAACTGATTAGATCTATT 285
consensus_9664#2 --ATAAAATATATTCCGCAAGCAGC-CAGAAGCACAAGCAACCAA---AACAGGCACAAA 292
consensus_9664#3 AAATTGAACTCAAAGCAGAAAAAACAAGACAATAATAAAAAGAACAACGGTGACAATAAG 132
** ** * * * * * * * * *
consensus_9664#0 TCATAGTTACACGTATCGTTTTCTTTTCGGATTATTT-CATTTAGTCATATAGACAAGCT 533
consensus_9664#1 TCATAGTTACACGTATCGTGTTCTTTTCGGATTATTT-CATTTAGTCATATAGACAAGCT 344
consensus_9664#2 TCAAACGTATATATACCGCATA-------------------------------------- 314
consensus_9664#3 CCAGTGTTACAATGACAAAATATAAGTCAAATTGTAGGCATATATATATATATATTATAT 192
** ** * * *
consensus_9664#0 GCTGTGTACAAGTATTTGTTTATTTCTCCTGCCATGTCGTAATTGTGTGAGGCACTCCAC 593
consensus_9664#1 GCTGTGTACAAGTATTTGTTTATTTCTCCTGCCCCCCCCCCCCTGTGTGAGGCACTCCAC 404
consensus_9664#2 ------------------------------------------------------------
consensus_9664#3 GACGACATGTGGAGTGCCTCACACAATTACGACACGGCAG-------------------- 232
consensus_9664#0 ATCTCTTCATATATATATATATATATATATATATATATATATAT----------GCCTAC 643
consensus_9664#1 ATCTCTTCATATATATATATATATATATATATATATATATATATATATATATATGCCTAC 464
consensus_9664#2 ------------------------------------------------------------
consensus_9664#3 ------------------------------------------------------------
consensus_9664#0 AATTTAACTTATANTTTGTCATTGTAACACTAGCTTAT---------------------- 681
consensus_9664#1 AATTTAACTTATATTTTGTCATTGTAACACTAGCTTATTGTCATCGTTGTTCTTTTTATT 524
consensus_9664#2 ------------------------------------------------------------
consensus_9664#3 ------------------------------------------------------------
consensus_9664#0 ------------------------------------------------------------
consensus_9664#1 ATTGTCTTGTTTTTTCTGCTTTGAGTTCAATTTATTCTACTATCAAAATACAGCTGTTAA 584
consensus_9664#2 ------------------------------------------------------------
consensus_9664#3 ------------------------------------------------------------
consensus_9664#0 ---------------------------------------------
consensus_9664#1 AGTATAAACCTATATATTCGTCATATATATATAAATATATATTCC 629
consensus_9664#2 ---------------------------------------------
consensus_9664#3 ---------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||