These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1545 fasta sequence [GGGCTCAGATGCATTCAAGAGACTCGTTCAAAATGTTCATGCTTTAGAGGCTACTATTCTTATGGTCATTGGGTTTCACACTCTTGAAGTCAAACAACCACATGTGCTACTCATTAAGGCCATTCGCGCAAATAAATTCCCGAAGGAAATAGCTCATACTAGCTACTATGTCTGCACCAATATACTGCATCTCACTACTTTAGTATTGCGAGATTCTGCAGAAGCAATTGCCGCTGCTAGTCTTTACATTGCTGCAAAGTGGAACGGAACAGACATTCAGTCTTCAAACGGGGAGTGGTACCATATTTTTTCCCCGATGCTGACTTTTGAGGAAGTCTCCAAAATAACAGACGAATTCACCCTTACTTTCCAAGAGTGCGATTTAAAAATCAGAGAGCAACTGCGCTGTT---TCCG-TCCCGGAAGTTACAAAGAGAACGAAGAGAGGATCTTGTCAATAATCCTCCTCGAGCTCAAGAACCTCAGAGGAGACCAGTTCCTGATTCTCAACAAAAAGCTGATTCTTGGAAAACAGAGAAAAGACCTTACAATTCGACAAATTCTAGTGCACCTCAAGTCCCATCTCAACATCCAAATCACCATGCTCGAAGCCATGCTGGTGGCTCCCAGAATACACAGATGAATCATCCATATCATGGACATAATCGGGCCCCACAATCACATGTTTATGGGAACGAACATCTCAACAGATCTCATTCTAACCGTCCTCCAGGTCCTGGGAATAATGAACCGGATCCTAAACGTCAGCGATTTGATCGCCCATTCCCAAATCAGTGTCAACGATCACCACAACCTCACTTGTCTGGTGGACATCATCCCGACGGAACAGCCCGTGCAAATCGTATGGAGAGTTCTGTCTCCCATTCTGGAGGTGGCGAACACAAAGTACATTATCAATCTGCTAATCGTATCCATGGAACAGATTACAGGATGGCACAATCCACTGGTTACAATGCTGTTCCAAATAAGCCACCTTACGGACGAGATGAACATGAAGACTCACGTCTTAACTCAGGGAATTCTCGTTCTGTAAAACCAACTGGTCATCCACAAGGAAACACACGAGTGAAGCCTGATCTAAATGACTATTTTTGAATATTTTCTTGATTAATATAGTTTTACAT-GGTGTGTGCATTTTTTG-CCACATTCCTGAA-TTTCCGCATACAGATAGCGTTGTACATATGTTAAACTGCTTTTTTTTGTTTAAAAGTATACCTACTTGCAGTTTGTTGACTCAAAACAGTCAGTTCGCCTTTCGTATTTGTCTAGTCTTTTAAGATCAACTGTAAAGTCTTTCTTCTTTTCCCATTACTGTGTTTATTAGTAGTGCATGTTTTTTTGTTGTTTTCGCGTAAGAATTTTTATATTAATTGCTTTTATACGAATAGTTTGGTACTTTTGTGTATTTCTTAATACATTTGTGTAGTTATTACTGTTCGATGTCTATTACCAATTTTCTTTGTATTGCCATTTATTTTGTAGTACATTGAATAATTTTCAGTTACTAATGGAAAAAAAAAAAAAAAA] [+] EMBL BG930972 [GGGCTCAGATGCATTCAAGAGACTCGTTCAAAATGTTCATGCTTTAGAGGCTACTATTCTTATGGTCATTGGGTTTCACACTCTTGAAGTCAAACAACCACATGTGCTACTCATTAAGGCCATTCGCGCAAATAAATTCCCGAAGGAAATAGCTCATACTAGCTACTATGTCTGCACCAATATACTGCATCTCACTACTTTAGTATTGCGAGATTCTGCAGAAGCAATTGCCGCTGCTAGTCTTTACATTGCTGCAAAGTGGAACGGAACAGACATTCAGTCTTCAAACGGGGAGTGGTACCATATTTTTTCCCCG ] [+] EMBL CD185888 [ cATTCTGCAGAAGCAATTGCCGCTGCTAGTCTTTACATTGCTGCAAAGTGGAACGGAACAGACATTCAGTCTTCAAACGGGGAGTGGTACCATATTTTTTCCCCGATGCTGACTTTTGAGGAAGTCTCCAAAATAACAGACGAATTCACCCTTACTTTCCAAGAGTGCGATTTAAAAATCAGAGAGCAACTGCGCTGTTCGCTCCGATCCCGGAAGTTACAAAGAGAACGAAGAGAGGATCTTGTCAATAATCCTCCTCGAGCTCAAGAACCTCAGAGGAGACCAGTTCCTGATTCTCAACAAAAAGCTGATTCTTGGAAAACAGAGAAAAGACCTTACAATTCGACAAATTCTAGTGCACCTCAAGTCCCATCTCAACATCCAAATCACCATGCTCGAAGCCAT ] [+] EMBL CD078770 [ CAAAATAACAGACGAATTCACCCTTACTTTCCAAGAGTGCGATTTAAAAATCAGAGAGCAACTGCGCTTAT TTAG TCCCGGAAGTTACAAAGAGAACGAAGAGAGGATCTTGTCAATAATCCTCCTCGAGCTCAAGAACCTCAGAGGAGACCAGTTCCTGATTCTCAACAAAAAGCTGATTCTTGGAAAACAGAGAAAAGACCTTACAATTCGACAAATTCTAGTGCACCTCAAGTCCCATCTCAACATCCAAATCACCATGCTCGAAGCCATGCTGGTGGCTCCCAGAATACACAGATGAATCATCCATATCATGGACATAATCGGGCCCCACAATCACATGTTTATGGGAACGAACATCTCAACAGATCTCATTCTAACCGTCCTCCAGGTCCTGGGAATAATGAACCGGATCCTAAACGTCAGCGATTTGATCGCCCATTCCCAAATCAGTGTCAACGATCACCACAACCTCACTTGTCTGGTGGACATCATCCCGACGGAACAGCCCGTGCAAATCGTATGGAGAGTTCTGTCTCCCATTCTGGAGGTGGCGAACACAAAGTACATTATCAATCTGCTAATCGTATCCATGGAACAGATTACAGGATGGCACAATCCACTGGTT ] [-] EMBL CD199214 [ CCATGCTGGTGGCTCNCAGAATACACAGATGAATCATCCATATCATGGACATAATCGGGCCCCACAATCACATGTTTATGGGAACGAACATCTCAACAGATCTCATTCTAACCGTCCTCCAGGTCCTGGGAATAATGAACCGGATCCTAAACGTCAGCGATTTGATCGCCCATTCCCAAATCAGTGTCAACGATCACCACAACCTCACTTGTCTGGTGGACATCATCCCGACGGAACAGCCCGTGCAAATCGTATGGAGAGTTCTGTCTCCCATTCTGG ] [-] EMBL CD073230 [ GGCGAACACAAAGTACATTATCAATCTGCTAATCGTATCCATGGAACAGATTACAGGATGGCACAATCCACTGGTTACAATGCTGTTCCAAATAAGCCACCTTACGGACGAGATGAACATGAAGACTCACGTCTTAACTCAGGGAATTCTCGTTCTGTAAAACCAACTGGTCATCCACAAGGAAACACACGAGTGAAGCCTGATCTAAATGACTATTTTTGAATATTTTCTTGATTAATATAGTTTTACAT GGTGTGTGCATTTTTTG CCACATTCCTGAA TTTCCGCATACAGATAGCGTTGTACATATGTTAAACTGCTTTTTTTTGTTTAAAAGTATACCTACTTGCAGTTTGTTGACTCAAAACAGTCAGTTCGCCTTTCGTATTTGTCTAGTCTTTTAAGATCAACTGTAAAGTCTTTCTTCTTTTCCCATTACTGTGTTTATTAGTAGTGCATGTTTTTTTGTTGTTTTCGCGTAAGAATTTTTATATTAATTGCTTTTATACGAATAGTTTGGTACTTTTGTGTATTTCTTAATACATTTGT ] [-] EMBL AI395657 [ attaAAATG CAATTTTTGAATATTTTCGTGATTAATATAGTTTTACATGGGTGTGTGCATTTTATGCCCACATTCCTGAATTTTCCGCATACAGATAGCGTTGTACATATGTTAAACTGCTTTTTTTTGTTTAAAAGTATACCTACTTGCAGTTTGTTGACTCAAAACAGTCAGTTCGCCTTTCGTATTTGTCTAGTCTTTTAAGATCAACTGTAAAGTCTTTCTTCTTTTCCCATTACTGTGTTTATTAGTAGTGCATGTTTTTTTGTTGTTTTCGCGTAAGAATTTTTATATTAATTGCTTTTATACGAATAGTTTGGTACTTTTGTGTATTTCTTAATACATTTGTGTAGTTATTACTGTTCGATGTCTATTACCAATTTTCTTTGTATTGCCATTTATTTTGTAGTACATTGAATAATTTTCAGTTACTAATGGAAAAAAAAAAAAAAAA] [-] EMBL BF936961 [ GTTTGTTGACTCAAAACAGTCAGTTCGCCTTTGGGATTTGTCTAGTCTTTTAAGATCAACTGTAAAGTCTTTGTTCTTTTCCCATT ] consensusID : consensus_9671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [GGGACCACACGATTGAAGCCTGATCTAAGTGCTAATATTTGAATATTTTCTTGATTAATATAGTTTAGCATGGTGTGTGCATTTTCTGCCACATTCGTGAATTACGGCATACAGATAGCGATGTACATATGCTAAACTGCTTTTTTTTGTTTAAAAGTATACCTACTTGCAGTTTGTTGACTCAAAACAGTCAGTTCGCCTTTCGTATTTGTCTAGTCTGTTAAGATCAACTGTAAAGTCTTTCTTCTTTTCCCATTACTGTGTTTATTAGTAGTGCATGTCCTGGATGTTGTGATTCGCGTAAGAATTTTTATCTTAATTGCTTTTGTCCGAATAGTTTGGTACTTGTGTGTATTTCTTAATACATTTGTGTAGTTATTAAAAAAAACAA] [-] EMBL AI395075 [GGGACCACACGATTGAAGCCTGATCTAAGTGCTAATATTTGAATATTTTCTTGATTAATATAGTTTAGCATGGTGTGTGCATTTTCTGCCACATTCGTGAATTACGGCATACAGATAGCGATGTACATATGCTAAACTGCTTTTTTTTGTTTAAAAGTATACCTACTTGCAGTTTGTTGACTCAAAACAGTCAGTTCGCCTTTCGTATTTGTCTAGTCTGTTAAGATCAACTGTAAAGTCTTTCTTCTTTTCCCATTACTGTGTTTATTAGTAGTGCATGTCCTGGATGTTGTGATTCGCGTAAGAATTTTTATCTTAATTGCTTTTGTCCGAATAGTTTGGTACTTGTGTGTATTTCTTAATACATTTGTGTAGTTATTAAAAAAAACAA] consensusID : consensus_9671#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 337 fasta sequence [GATCCTAAACGTCAGCGATTTGATCGCCCATTCCCAAATCAGTGTCAACGATCACCACAACCTCACTTGTCTGGTGGACATCATCCCGACGGAACAGCCCGTCCACCTTACGGACGAGATGAACATGAAGACTCACGTCTTAACTCAGGGAATTCTCGTTCTGTAAAACCAACTGGTCATCCACAAGGAAACACACGAGTGAAGCCTGATCTAAATGACTATTTTTGAATATTTTCTTGATTAATATAGTTTTACATGGTGTGTGCATTTTTTGCCACATTCCTGAATTTCCGCATACAGATAGCGTTGTACATATGTTAAACTGCTTTTTTTTTGT] [+] EMBL CD117012 [GATCCTAAACGTCAGCGATTTGATCGCCCATTCCCAAATCAGTGTCAACGATCACCACAACCTCACTTGTCTGGTGGACATCATCCCGACGGAACAGCCCGTCCACCTTACGGACGAGATGAACATGAAGACTCACGTCTTAACTCAGGGAATTCTCGTTCTGTAAAACCAACTGGTCATCCACAAGGAAACACACGAGTGAAGCCTGATCTAAATGACTATTTTTGAATATTTTCTTGATTAATATAGTTTTACATGGTGTGTGCATTTTTTGCCACATTCCTGAATTTCCGCATACAGATAGCGTTGTACATATGTTAAACTGCTTTTTTTTTGT] [+] EMBL SM3781 [ AGCCTGATCTAAATGACTATTTTTGAATATTTTCTTGATTAATATAGTTTTACATGGTGTGTGCA TTTTTGCCACATTCCTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9671#0 GGGCTCAGATGCATTCAAGAGACTCGTTCAAAATGTTCATGCTTTAGAGGCTACTATTCT 60 consensus_9671#2 ------------------------------------------------------------ consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 TATGGTCATTGGGTTTCACACTCTTGAAGTCAAACAACCACATGTGCTACTCATTAAGGC 120 consensus_9671#2 ------------------------------------------------------------ consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 CATTCGCGCAAATAAATTCCCGAAGGAAATAGCTCATACTAGCTACTATGTCTGCACCAA 180 consensus_9671#2 ------------------------------------------------------------ consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 TATACTGCATCTCACTACTTTAGTATTGCGAGATTCTGCAGAAGCAATTGCCGCTGCTAG 240 consensus_9671#2 ------------------------------------------------------------ consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 TCTTTACATTGCTGCAAAGTGGAACGGAACAGACATTCAGTCTTCAAACGGGGAGTGGTA 300 consensus_9671#2 ------------------------------------------------------------ consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 CCATATTTTTTCCCCGATGCTGACTTTTGAGGAAGTCTCCAAAATAACAGACGAATTCAC 360 consensus_9671#2 ------------------------------------------------------------ consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 CCTTACTTTCCAAGAGTGCGATTTAAAAATCAGAGAGCAACTGCGCTGTTTCCGTCCCGG 420 consensus_9671#2 ------------------------------------------------------------ consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 AAGTTACAAAGAGAACGAAGAGAGGATCTTGTCAATAATCCTCCTCGAGCTCAAGAACCT 480 consensus_9671#2 ------------------------------------------------------------ consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 CAGAGGAGACCAGTTCCTGATTCTCAACAAAAAGCTGATTCTTGGAAAACAGAGAAAAGA 540 consensus_9671#2 ------------------------------------------------------------ consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 CCTTACAATTCGACAAATTCTAGTGCACCTCAAGTCCCATCTCAACATCCAAATCACCAT 600 consensus_9671#2 ------------------------------------------------------------ consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 GCTCGAAGCCATGCTGGTGGCTCCCAGAATACACAGATGAATCATCCATATCATGGACAT 660 consensus_9671#2 ------------------------------------------------------------ consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 AATCGGGCCCCACAATCACATGTTTATGGGAACGAACATCTCAACAGATCTCATTCTAAC 720 consensus_9671#2 ------------------------------------------------------------ consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 CGTCCTCCAGGTCCTGGGAATAATGAACCGGATCCTAAACGTCAG---CGATTTGATCGC 777 consensus_9671#2 ------------------------------GATCCTAAACGTCAG---CGATTTGATCGC 27 consensus_9671#1 ----------------------------GGGACCACACGATTGAAGCCTGATCTAAGTGC 32 ** * * * * *** * * ** consensus_9671#0 CCATTCCCAAATCAGTGTCAACGATCACCACAACCTCACTTGTCTGGTGGACATCATCCC 837 consensus_9671#2 CCATTCCCAAATCAGTGTCAACGATCACCACAACCTCACTTGTCTGGTGGACATCATCCC 87 consensus_9671#1 TAATATTTGAAT--ATTTTCTTGATTAATATAGTTTAGCATGGTGTGTGCATTTTCTGCC 90 ** *** * * *** * * * * * ** *** * * * ** consensus_9671#0 GACGGAACAGCCCGTGCAAATCGTATGGAGAGTTCTGTCTCCCATTCTGGAGGTGGCGAA 897 consensus_9671#2 GACGGAACAGCCCGT--------------------------------------------- 102 consensus_9671#1 ACATTCGTGAATTACGGCATACAGATAGCGAT---------------------------- 122 consensus_9671#0 CACAAAGTACATTATCAATCTGCTAATCGTATCCATGGAACAGATTACAGGATGGCACAA 957 consensus_9671#2 ------------------------------------------------------------ consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 TCCACTGGTTACAATGCTGTTCCAAATAAGCCACCTTACGGACGAGATGAACATGAAGAC 1017 consensus_9671#2 ------------------------------CCACCTTACGGACGAGATGAACATGAAGAC 132 consensus_9671#1 --------GTACATATGCTAAACTGCTTTTTTTTGTTTAAAAGTATACCTACTTGCAGTT 174 ** * * * ** ** ** consensus_9671#0 TCACGTCTTAACTCAGGGAATTCTCGTTCTGTAAAACCAACTGGTCATCCACAAGGAAAC 1077 consensus_9671#2 TCACGTCTTAACTCAGGGAATTCTCGTTCTGTAAAACCAACTGGTCATCCACAAGGAAAC 192 consensus_9671#1 TGTTGACTCAAAACAGTCAGTTCGCCTTTCGTA--TTTGTCTAGTCTGTTAAGATCAACT 232 * * ** ** *** * *** * ** *** ** *** * * ** consensus_9671#0 ACACGAGTGAAGCCTGATCTAAATGACTATTTTTGAATATTTTCTTGATTAATATAGTTT 1137 consensus_9671#2 ACACGAGTGAAGCCTGATCTAAATGACTATTTTTGAATATTTTCTTGATTAATATAGTTT 252 consensus_9671#1 GTAAAGTCTTTCTTCTTTTCCCATTACTGTGTTTATTAGTAGTGCATGTCCTGGATGTTG 292 * * ** *** * *** * * * *** consensus_9671#0 TACATGGTGTGTGCATTTTTTGCCACATTCCTGAATTTCCGCATACAGATAGCGTTGTAC 1197 consensus_9671#2 TACATGGTGTGTGCATTTTTTGCCACATTCCTGAATTTCCGCATACAGATAGCGTTGTAC 312 consensus_9671#1 TGATTCGCGTAAGAATTTTTATCTTAATTGCTTT-TGTCCGAATAGTTTGGTACTTGTGT 351 * * * ** * ****** * *** ** * **** *** **** consensus_9671#0 ATATGTTAAACTGCTTTTTTTTGTTTAAAAGTATACCTACTTGCAGTTTGTTGACTCAAA 1257 consensus_9671#2 ATATGTTAAACTGCTTTTTTTTTGT----------------------------------- 337 consensus_9671#1 GTATTTCTTAATACATTTGTGTAGTTATTAAAAAAAACAA-------------------- 391 *** * * * * *** * * * consensus_9671#0 ACAGTCAGTTCGCCTTTCGTATTTGTCTAGTCTTTTAAGATCAACTGTAAAGTCTTTCTT 1317 consensus_9671#2 ------------------------------------------------------------ consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 CTTTTCCCATTACTGTGTTTATTAGTAGTGCATGTTTTTTTGTTGTTTTCGCGTAAGAAT 1377 consensus_9671#2 ------------------------------------------------------------ consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 TTTTATATTAATTGCTTTTATACGAATAGTTTGGTACTTTTGTGTATTTCTTAATACATT 1437 consensus_9671#2 ------------------------------------------------------------ consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 TGTGTAGTTATTACTGTTCGATGTCTATTACCAATTTTCTTTGTATTGCCATTTATTTTG 1497 consensus_9671#2 ------------------------------------------------------------ consensus_9671#1 ------------------------------------------------------------ consensus_9671#0 TAGTACATTGAATAATTTTCAGTTACTAATGGAAAAAAAAAAAAAAAA 1545 consensus_9671#2 ------------------------------------------------ consensus_9671#1 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||