These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 999 fasta sequence [GCTTAAATAACTGAGCTAATGGGTGGCTCCTTACACGTATTTTGACCTGGTAAATTAGACAGTAGTAAAATAATTTGTAATGCTTGTTTTTCTTATTTGTTTTTCAAACAATCTTTTGTTTTATTAATTTTCATGTGAATGCTCGTAATATTTGCTTGTTTAATCCTTATAAGAATATGGTTCATATGAAAAATTATTTGCTTATAATGATAACAATGATAATATAGCTTGTGAAGTTCATTTTTATTAATGTTCTTAGAACATTGATAAGTCCTAGTACTTTTTTTCTTACTGAAGTCAGATGAACTAAATACAAATACAGTACAGTTGGAGACCCTGAGTGACATGGCTCAGAGTCGATCACAATGGCGCAAATGTATACACTCTTTGTCTTCCCTTGAACCTTGATATTAAAATTGTTTTATACCTTTCTACGAACTAATTCTTTCTCCCGGTATCATATCCTTATAATATTCAATCTTTTTTTATATTTTACTACTGTTGAAGTAACTGTTTTTGTGAGTTTGGTGCTCGTCTTGTTGTGGCAACTTAGAACAGTGCATATATGTGCCTAGTCCTACGTTNTAGACGATTGACTGACTGACAGATACAGTAACAATATGGCTGAAGGCATAGTGGTTTTAATTTCTTGTGTGTATTTATGTGATAAGTAAACTTGCTTATCTTCCTCTTATTTTAAGTGAATAAGTATAGCAGTCACCCGCATATAAAAATCCAATTATGTACTAAACTGATGAATCATTAATGTATGTTTTTGAGTGAATTATTGTTAATAAGCAAACACTTTTTATTCTGATTATATTTTATTTTGTTTTAGTGCATCAATCCTTCTAATGAAGAATAAGAATTGAAGTTTTGGATGTATCCATATCTACCTGTTGCAATATCATCATTTCATCAGTGGTTTAAATGAAATAAAACATTATTTTTTTAAAACTGTATATGCATTTAATTGGAATTTATAACTGTATATACAAT] [+] EMBL CD082415 [GCTTAAATAACTGAGCTAATGGGTGGCTCCTTACACGTATTTTGACCTGGTAAATTAGACAGTAGTAAAATAATTTGTAATGCTTGTTTTTCTTATTTGTTTTTCAAACAATCTTTTGTTTTATTAATTTTCATGTGAATGCTCGTAATATTTGCTTGTTTAATCCTTATAAGAATATGGTTCATATGAAAAATTATTTGCTTATAATGATAACAATGATAATATAGCTTGTGAAGTTCATTTTTATTAATGTTCTTAGAACATTGATAAGTCCTAGTACTTTTTTTCTTACTGAAGTCAGATGAACTAAATACAAATACAGTACAGTTGGAGACCCTGAGTGACATGGCTCAGAGTCGATCACAATGGCGCAAATGTATACACTCTTTGTCTTCCCTTGAACCTTGATATTAAAATTGTTTTATACCTTTCTACGAACTAATTCTTTCTCCCGGTATCATATCCTTATAATATTCAATCTTTTTTTATATTTTACTACTGTTGAAGTAACTGTTTTTGTGAGTTTGGTGCTCGTCTTGTTGTGGCAACTTAGAACAGTGCATATATGTGCCTAGTCCTACGTTNTAGACGATTGACTGACT ] [-] EMBL CD076013 [ TACC TTCTACGAACTAA TCTTTCTCCCGGTATCATATCCTTATAATATTCAATCTTTTTTTATATTTTACTACTGTTGAAGTAACTGTTTTTGTGAGTTTGGTGCTCGTCTTGTTGTGGCAACTTAGAACAGTGCATATATGTGCCTAGTCCTACGTTTTAGACGATTGACTGACTGACAGATACAGTAACAATATGGCTGAAGGCATAGTGGTTTTAATTTCTTGTGTGTATTTATGTGATAAGTAAACTTGCTTATCTTCCTCTTATTTTAAGTGAATAAGTATAGCAGTCACCCGCATATAAAAATCCAATTATGTACTAAACTGATGAATCATTAATGTATGTTTTTGAGTGAATTATTGTTAATAAGCAAACACTTTTTATTCTGATTATATTTTATTTTGTTTTAGTGCATCAATCCTTCTAATGAAGAATAAGAATTGAAGTTTTGGATGTATCCATATCTACCTGTTGCAATATCATCATTTCATCAGTGGTTTAAATGAAATAAAACATTATTTTTTTAAAACTGTATATGCATTTAATTGGAATTTATAACTGTATATACAAT] consensusID : consensus_9672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 677 fasta sequence [ATTTCAGGAGTACATGAGAGCTTTTAGGAAAAAGTGTTCATTCCAGTGTAGAAGCACGACTTACGAAGGGCAAGTTTCCTTCTAATCTACCTGAAAATGTTTCCAAATATTGTGAAAGTCTAAAATATATCTTGAATGATTTAAAGTATTCTGCAGTGGAAACTAACTGCTTTCATCCTCAGCTTTTGTATCGCGGGAGGTTTGATAGTATAGTGTTTTTAAAAGATATAAATGAACCTATTTTGACTGAATGGAAAACAGTACACGAATCCAAAAGAATATTGACTATTGA-ACAGGCTTATGATAGTCCATTACAAGTGGCCGCGTATATTGGAGCTTATAATTTTACTCGTTATCCTGAATCTTTGCCTGTGACAATGTATTTTGAATCTAACTTAGGTCAAAAAAGGAATGCTGGTGTATTCTTATGGTGATGGTTATCCAGCTGCTCGGTTTGTTTTGAACGAAACTAACTTGTTACATTACTGGGAGTTGTGGTGTGAACGTGTTAAAACTTATTATGATCAGTGCATCAATCCTTCTAATGAAGAATAANGAANNTG-AGNTNTGGATGTATCCATATCTACCTGTTGCNATATCATCATTTCATCAGTGGTTAANATGAAAT-AAACATTATTTTTTT-AAACTGTTATGCATTTAATGGNANTTATACTGAT] [+] EMBL CD079255 [ATTTCAGGAGTACATGAGAGCTTTTAGGAAAAAGTGTTCATTCCAGTGTAGAAGCACGACTTACGAAGGGCAAGTTTCCTTCTAATCTACCTGAAAATGTTTCCAAATATTGTGAAAGTCTAAAATATATCTTGAATGATTTAAAGTATTCTGCAGTGGAAACTAACTGCTTTCATCCTCAGCTTTTGTATCGCGGGAGGTTTGATAGTATAGTGTTTTTAAAAGATATAAATGAACCTATTTTGACTGAATGGAAAACAGTACACGAATCCAAAAGAATATTGACTATTGA ACAGGCTTATGATAGTCCATTACAAGTGGCCGCGTATATTGGAGCTTATAATTTTACTCGTTATCCTGAATCTTTGCCTGTGACAATGTATTTTGAATCTAACTTAGGTCAAAAAAGGAATGCTGGTGTATTCTTATGGTGATGGTTATCCAGCTGCTCGGTTTGTTTTGAACGAAACTAACTTGTTACATTACTGGGAGTTGTGGTGTGAACGTGTTAAAACTTATTATGATCAGTGCATCAATCCTTCTAATGAAGAATAANGAANNTG AGNTNTGGATGTATCCATATCTACCTGTTGCNATATCATCATTTCATCAGTGGTTAANATGAAAT AAACATTATTTTTTT AAACTGTTATGCATTTAATGGNANTTATACTGAT] [+] EMBL CD081958 [ATTTCAGGAGTACATGAGAGCTTTTAGGAAAAAGTGTTCATTCCAGTGTAGAAGCACGACTTACGAAGGGCAAGTTTCCTTCTAATCTACCTGAAAATGTTTCCAAATATTGTGAAAGTCTAAAATATATCTTGAATGATTTAAAGTATTCTGCAGTGGAAACTAACTGCTTTCATCCTCAGCTTTTGTATCGCGGGAGGTTTGATAGTATAGTGTTTTTAAAAGATATAAATGAACCTATTTTGACTGAATGGAAAACAGTACACGAATCCAAAAGAATATTGACTATTGA ACAGGCTTATGATAGTCCATTACAAGTGGCCGCGTATATTGGAGCTTATAATTNTACTCGTTATCCTGAATCTT ] [+] EMBL CD139557 [ AAGTCTAAAATATATCTTGAATGATTTAAAGTATTCTGCAGTGGAAACTAACTGCTTTCATCCTCAGCTTTTGTATCGCGGGAGGTTTGATAGTATAGTGTTTTTAAAAGATATAAATGAACCTATTTTGACTGAATGGAAAACAGTACACGAATCCAAAAGGATATTGACTATTGA ACAGGCTTATGATAGTCCATTACAAGTGGCCGCGTATATTGGAGCTTATAATTTTACTCGTCATCCTGAATCTTTGCCTGTGACAATGTATTTTGAATCTAACTTAGGTCAAAAAAGG ATGCTGGTGTATTCTTA ] [+] EMBL CD139774 [ AAGTCTAAAATATATCTTGAATGATTTAAAGTATTCTGCAGGGGAAACTAACTGCTTTCATCCTCAGCTTTTGTATCGCGGGAGGTTTGATAGTATAGTGTTTTTAAAAGATATAAATGAACCTATTTTGACTGAATGGAAAACAGTACACGAATCCAAAA ] [-] EMBL CD139640 [ TGACTA TGACAGGGGCTTATGATAGTCCATTACAAGTGGCCGCGTATATTGGAGCTTATAATTTTACTCGTTATCCTGAATCTTTGCCTGTGACAATGTATTTTGAATCTAACTTAGGTCAAAAAAGGAATGCTGGTGTATTCTTATGGTGATGGTTATCCAGCTGCTCGGTTTGTTTTGAACGAAACTAACTTGTTACATTACTGGGAGTTGTGGTGTGAACGTGTTAAAACTTATTATGATCAGTGCATCAATCCTTCTAATGAAGAATAA GAA TTGAAGTTTTGGATGTATCCATATCTACCTGTTGCAATATCATCATTTCATCAGTGGTTTAAATGAAATAAAACATTATTTTTTTAAAACTGTata ] consensusID : consensus_9672#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence [ACTACCACCTCACTTTGATTTACAGCTTACATGATATTTACAAACAACTCTTAAAAAATAATTAAATCAATCAAGTTATGAAAACGACGGAACTTCCCATATACTTAAGATTATTTTATTGGCTTTATGCGAATCTGGAAAGCCCATCCACCATACATTTATCTAAAAATGTGTTTATAATTTTTAACCGCGTTTCTTAGTATCTAATTCATTGTTATTTCAAAATAGGTGACAATGTATTTTGAATCTAACTTAGGTCAAAAAAGGAATGCTGGTGTATTCTTATGGTGATGGTTATCCAGCTGCTCGGTTTGTTTTGAACGAAACTAACTTGTTACATTACTGGGAGTTGTGGTGTGAACGTGTTAAAACTTATTATGATCAGGTAAACTGCTTAGCATGTTTGGTTGACTTTTGTTGTGCAGTACTAAATTTTAAAATTTCCTCAGGTTTCTGTT] [+] EMBL CD131297 [ACTACCACCTCACTTTGATTTACAGCTTACATGATATTTACAAACAACTCTTAAAAAATAATTAAATCAATCAAGTTATGAAAACGACGGAACTTCCCATATACTTAAGATTATTTTATTGGCTTTATGCGAATCTGGAAAGCCCATCCACCATACATTTATCTAAAAATGTGTTTATAATTTTTAACCGCGTTTCTTAGTATCTAATTCATTGTTATTTCAAAATAGGTGACAATGTATTTTGAATCTAACTTAGGTCAAAAAAGGAATGCTGGTGTATTCTTATGGTGATGGTTATCCAGCTGCTCGGTTTGTTTTGAACGAAACTAACTTGTTACATTACTGGGAGTTGTGGTGTGAACGTGTTAAAACTTATTATGATCAGGTAAACTGCTTAGCATGTTTGGTTGACTTTTGTTGTGCAGTACTAAATTTTAAAATTTCCTCAGGTTTCTGTT] consensusID : consensus_9672#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 288 fasta sequence [CCCTTCGCTCCATTACAAGTGGCCGCGTATATTGGAGCTTATAATTTTACTCGTTATCCTGAATCTTTGCCTGTCAAAAAAAGGAATGCTGGCGTATTCTTATGGTGATGGTTATCCAGCTGCTCGGTTTGTTTTGAACGAAACTAACTTGTTACATTACTGGGAGTTGTGGTGTGAACGTGTTAAAACTTATTATGATCAGTGCATCAATCCTTCTAATGAAGAATAAGAATTGAAGTTTTGGATGTATCCATATCTACCTGTTGCAATATCATCATTTCATCAGTG] [+] EMBL CD149034 [CCCTTCGCTCCATTACAAGTGGCCGCGTATATTGGAGCTTATAATTTTACTCGTTATCCTGAATCTTTGCCTGTCAAAAAAAGGAATGCTGGCGTATTCTTATGGTGATGGTTATCCAGCTGCTC ] [+] EMBL CD131597 [ atgatagTCCATTACAAGTGGCCGCGTATATTGGAGCTTATAATTTTACTCGTTATCCTGAATCTTTGCCTGTC AAAAAAGGAATGCTGGTGTATTCTTATGGTGATGGTTATCCAGCTGCTCGGTTTGTTTTGAACGAAACTAACTTGTTACATTACTGGGAGTTGTGGTGTGAACGTGTTAAAACTTATTATGATCAGTGCATCAATCCTTCTAATGAAGAATAAGAATTGAAGTTTTGGATGTATCCATATCTACCTGTTGCAATATCATCATTTCATCAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9672#1 ------------------------------------------------------------ consensus_9672#3 ------------------------------------------------------------ consensus_9672#2 ------------------------------------------------------------ consensus_9672#0 GCTTAAATAACTGAGCTAATGGGTGGCTCCTTACACGTATTTTGACCTGGTAAATTAGAC 60 consensus_9672#1 ------------------------------------------------------------ consensus_9672#3 ------------------------------------------------------------ consensus_9672#2 ------------------------------------------------------------ consensus_9672#0 AGTAGTAAAATAATTTGTAATGCTTGTTTTTCTTATTTGTTTTTCAAACAATCTTTTGTT 120 consensus_9672#1 ------------------------------------------------------------ consensus_9672#3 ------------------------------------------------------------ consensus_9672#2 ------------------------------------------------------------ consensus_9672#0 TTATTAATTTTCATGTGAATGCTCGTAATATTTGCTTGTTTAATCCTTATAAGAATATGG 180 consensus_9672#1 ------------------------------------------------------------ consensus_9672#3 ------------------------------------------------------------ consensus_9672#2 ------------------------------------------------------------ consensus_9672#0 TTCATATGAAAAATTATTTGCTTATAATGATAACAATGATAATATAGCTTGTGAAGTTCA 240 consensus_9672#1 ------------------------------------------------------------ consensus_9672#3 ------------------------------------------------------------ consensus_9672#2 ------------------------------------------------------------ consensus_9672#0 TTTTTATTAATGTTCTTAGAACATTGATAAGTCCTAGTACTTTTTTTCTTACTGAAGTCA 300 consensus_9672#1 -ATTTCAGGAGTACATGAGAGCTTTTAGGAAAAAGTGTTCATTCCAGTGTAGAAGCACGA 59 consensus_9672#3 ------------------------------------------------------------ consensus_9672#2 ------------------------------------------------------------ consensus_9672#0 GATGAACTAAATACAAATACAGTACAGTTGGAGACCCTGAGTGACATGGCTCAGAGTCGA 360 consensus_9672#1 CTTACGAAGGGCAAGTTTCCTTCTAATCTACCTGAAAATGTTTCCAAATATTGTGAAAGT 119 consensus_9672#3 ------------------------------------------------------------ consensus_9672#2 -----------------------------------------------------------A 1 consensus_9672#0 TCACAATGGCGCAAATGTATACACTCTTTGTCTTCCCTTGAACCTTGATATTAAAATTGT 420 consensus_9672#1 CTAAAATATATCT-TGAATGATTTAAAGTATTCTGCAGTGGAAACTAACTGCTTTCATCC 178 consensus_9672#3 ------------------------------------------------------------ consensus_9672#2 CTACCACCTCACT-T---TGATTTACAGC-TTACATGATATTTACAAACAACTCTTAAA- 55 consensus_9672#0 TTTATACCTTTCTACGAACTAATTCTTTCTCCCGGTATCATATCCTTATAATATTCAAT- 479 consensus_9672#1 TCAGCTTTTGTATCGCGGGAGGTTTGATAGTATAGTGTTTTTAAAAGATATAAATGAACC 238 consensus_9672#3 ------------------------------------------------------------ consensus_9672#2 -AAATAATTAAATCAATCAAGTTATGAAAACGACGGAACTTCCC---ATATACTTAAGAT 111 consensus_9672#0 -CTTTTTTTATATTTTACTACTGTTGA-AGTAACTGTTTTTGTGAGTTTGGTGCTCGTCT 537 consensus_9672#1 TATTTTGACTGAATGGAAAACAG--TACACGAATCCA---AAAGAATATTGACTATTGAA 293 consensus_9672#3 ------------------------------------------------------------ consensus_9672#2 TATTTTATTGGCTT-----------TATGCGAATCTGG--AAAGCCCATCCACCATACAT 158 consensus_9672#0 TGTTGTGGCAACTTAGAACAGTGCATATATGTGCCTAGTCCTACGTTNTAGACGATTGAC 597 consensus_9672#1 CAGGCTTATGATA-GTCCATTACAAGTGGCCGCGTATATTGGAGCTTATAATTTTACTCG 352 consensus_9672#3 ------CCCTTCG-CTCCATTACAAGTGGCCGCGTATATTGGAGCTTATAATTTTACTCG 53 consensus_9672#2 TTATCTAAAAATGTGTTTATAATTTTTAACCGCGTTTCTT--AGTATCTAATTC--ATTG 214 consensus_9672#0 TGACTGACAGATACAGTAACAATA--TGGCTGAAGGCATAGTGGTTT-TAATTTCTTGTG 654 * * * * * * * * ***** * consensus_9672#1 TTATCCTGAATCTTTGCCTGTGACAATGTAT-TTTGAATCTAACTTAGGTCAAAAAAGGA 411 consensus_9672#3 TTATCCTGAATCTTTGCCTGTCA----------------------------AAAAAAGGA 85 consensus_9672#2 TTATTTCAAA-----ATAGGTGACAATGTAT-TTTGAATCTAACTTAGGTCAAAAAAGGA 268 consensus_9672#0 TGTATTTATGTG---ATAAGTAAACTTGCTTATCTTCCTCTTATTTTAAGTGAATAAGTA 711 * ** * ** *** * consensus_9672#1 ATGCTGGTGTATTCTTATGGTGAT--GGTTATCCAGCTGCTCGGTTTGTTTTGAACGAAA 469 consensus_9672#3 ATGCTGGCGTATTCTTATGGTGAT--GGTTATCCAGCTGCTCGGTTTGTTTTGAACGAAA 143 consensus_9672#2 ATGCTGGTGTATTCTTATGGTGAT--GGTTATCCAGCTGCTCGGTTTGTTTTGAACGAAA 326 consensus_9672#0 TAGCAGTCACCCGCATATAAAAATCCAATTATGTACTAAACTGATGAATCATTAATGTAT 771 ** * * *** ** **** * * * * * ** * * consensus_9672#1 CTAACTTGTTACATTACTGGGAGT-------TGTGGTGTGAACGTGTTAAAACTTATTAT 522 consensus_9672#3 CTAACTTGTTACATTACTGGGAGT-------TGTGGTGTGAACGTGTTAAAACTTATTAT 196 consensus_9672#2 CTAACTTGTTACATTACTGGGAGT-------TGTGGTGTGAACGTGTTAAAACTTATTAT 379 consensus_9672#0 GTTTTTGAGTGAATTATTGTTAATAAGCAAACACTTTTTATTCTGATTATATTTTATTTT 831 * * * **** ** * * * * * *** * ***** * consensus_9672#1 GATC-AGTGCATCAATCCTTCTAATGAAGAATAANGAANNTGAGNTNTGGATGTATCCAT 581 consensus_9672#3 GATC-AGTGCATCAATCCTTCTAATGAAGAATAAG-AATTGAAGTTTTGGATGTATCCAT 254 consensus_9672#2 GATC-AG---GTAAA--CTGCTTAGCATGTTTGGTTGACTTTTGTTGTGCAGTACTAAAT 433 consensus_9672#0 GTTTTAGTGCATCAATCCTTCTAATGAAGAATAAG-AATTGAAGTTTTGGATGTATCCAT 890 * * ** * ** ** ** * * * * * * * ** * * ** consensus_9672#1 ATCTACCTGTTGCNATATCATCATTTCATCAGTGGTTAANATGAAATAAA-CATTATTTT 640 consensus_9672#3 ATCTACCTGTTGCAATATCATCATTTCATCAGTG-------------------------- 288 consensus_9672#2 TTTAAAATTTCCTCAGGTTTCTGTT----------------------------------- 458 consensus_9672#0 ATCTACCTGTTGCAATATCATCATTTCATCAGTGGTTTAAATGAAATAAAACATTATTTT 950 * * * * * * ** consensus_9672#1 TTTAAACTGTTATGCATTTAATGGNANTTATACTGAT------------ 677 consensus_9672#3 ------------------------------------------------- consensus_9672#2 ------------------------------------------------- consensus_9672#0 TTTAAAACTGTATATGCATTTAATTGGAATTTATAACTGTATATACAAT 999 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||