These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9673#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1053 fasta sequence [AACTGACAGGAGACCGTGTGATTTTCGATCGACGCCTCGGAACAGAACTAGTAAATGCTACGCTCCACCATAATGGAATGATCAAATTAGACACTGGACAGCTCGTAGCTCCCTCCTCTCGGGAAGGCTCTAAATACATGTTGGTCACAGATGAAGACAACCAAACCCTTCTAGTTTACGATCGTTTTACAGGAGAACAGATCAAGGGTGCACAGGTTGATCCCAACGGTTTGATTCTGTTCGAAGATGGACGCATGGCCATTGAGCCATCATCTAAACTAGATAGATATGTTATAATGACGGACCCAAACAACGGTGAAAAACTGGTTTTCGACAGACGAACAGGTAGTCATGTCAAGGATGCTGTGTACAGTGAAGATGGGTTGATCCGCTTTCCAGACGGTAGGCGCGTTGCACCAGGTTCCACTGACAACAGTTCACAGTATCTAATTCACTTCGACTCTGCAACGAAGGAGAACTTGGTTTTTGACAGACATACTGGTGAACAAGTCGAGGGCGCCCCAGTAGATTCACGAGGTTTAATACTTCTCCCCGACGGTAAGTTGCATCTAGATCAGAACCAAGTAAAGCATAGGTACATTATCCTACAGGAGACAATCGAAAATACCACATTCGTAGTCGACACCAAATCAGGTCAGAAAATTGATGGGGCAATTGTTTTGGACAATGGTCTCGTCAAGCTACCCAATGGAAATCTGGTTGCACCCAGCTCAAACACAAGCACAAATTACATGGTGGTCGAATCGACTGAGGGCGAAGAGAATCCAGTGGTATTCGATCGCAGGACAGGTGAGCAAATCTCAGATGCTTACCTAGATAAGGATGGTGTCATACATTTGCCAGATGGAAGTTTGGCTATCTCGGCGTCAGAAACTATGGATCGCTACCTTGTGGCACNNAGATAACTGACAGGAGACCCTGTGATTTTCGATCGACGCCTCGNAACAGAACTAGTAAATGCTACGCTCCACCCATATGGAATGATCAANTTAGACACTGGACAGCTCGTAGCTCCCTCTCTCGGGAAAGGTC] [+] EMBL CD131925 [AACTGACAGGAGACCGTGTGATTTTCGATCGACGCCTCGGAACAGAACTAGTAAATGCTACGCTCCACCATAATGGAATGATCAAATTAGACACTGGACAGCTCGTAGCTCCCTCCTCTCGGGAAGGCTCTAAATACATGTTGGTCACAGATGAAGACAACCAAACCCTTCTAGTTTACGATCGT ] [+] EMBL CD071062 [ CAGAACTAGTAAATGCTACGCTCCACCATAATGGAATGATCAAATTAGACACTGGACAGCTCGTAGCTCCCCCCTCTCGGGAAGGCTCTAAATACATGTTGGTCACAGATGAAGACAACCAAACCCTTCTAGTTTACGATCGTTTTACAGGAGAACAGATCAAGGGTGCACAGGTTGATCCCAACGGTTTGATTCTGTTCGAAGATGGACGCATGGCCATTGAGCCATCATCTAAACTAGATAGAT ] [+] EMBL CD071093 [ CAGAACTAGTAAATGCTACGCTCCACCATAATGGAATGATCAAATTAGACACTGGACAGCTCGTAGCTCCCTCCTCTCGGGAAGGCTCTAAATACATGTTGGTCACAGATGAAGACAACCAAACCCTTCTAGTTTACGATCGTTTTACAGGAGAACAGATCAAGGGTGCACAGGTTGATCCCAACGGTTTGATTCTGTTCGAAGATGGACGCATGGCCATTGAGCCATCATCTAAACTAGATAGAT ] [+] EMBL CD068767 [ GCTCTAAATACATGTTGGTCACAGATGAAGACAACCAAACCCTTCTAGTTTACGATCGTTTTACAGGAGAACGGATCAAGGGTGCACAGGTTGATCCCAACGGTTTGATTCTGTTCGAAGATGGACGCATGGCCATTGAGCCATCATCTAAACTAGATAGATATGTTATAATGACGGACCCAAACAACGGTGAAAAACTGGTTTTCGACAGACGAACAGGTAGTCATGTCAAGGATGCTGTGTACAGTGAAGATGGGTTGATCCGCTTTCCAGACGGTAGGCGCGTTGCACCAGGTTCCACTGACAACAGTTCACAGTATCTAATTCACTTCGACTCTGCAACGAAGGAGAACTTGGTTTTTGACAGACATACTGGTGAACAAGTCGAGGGCGCCCCAGTAGATTCACGAGGTTTAATACTTCTCCCCGACGGTAAGTTGCATCTAGATCAGAACCAAGTAAAGCATTGGTACATTATCCTACAGGAGACAATCGAAAATACCACATTCGTAGTCGACACCAAATCAGGTCAGAAAATTGATGGGGCAATTGTTTTGGACAATGGTCTCGTCAAGCTACCCAATGGAAATCTGGTTGCACCCAGCTCAAA ] [+] EMBL CD068768 [ GCTCTAAATACATGTTGGTCACAGATGAAGACAACCAAACCCTTCTAGTTTACGATCGTTTTACAGGAGAACGGATCAAGGGTGCACAGGTTGATCCCAACGGTTTGATTCTGTTCGAAGATGGACGCATGGCCATTGAGCCATCATCTAAACTAGATAGATATGTTATAATGACGGACCCAAACAACGGTGAAAAACTGGTTTTCGACAGACGAACAGGTAGTCATGTCAAGGATGCTGTGTACAGTGAAGATGGGTTGATCCGCTTTCCAGACGGTAGGCGCGTTGCACCAGGTTCCACTGACAACAGTTCACAGTATCTAATTCACTTCGACTCTGCAACGAAGGAGAACTTGGTTTTTGACAGACATACTGGTGAACAAGTCGAGGGCGCCCCAGTAGATTCACGAGGTTTAATACTTCTCCCCGACGGTAAGTTGC ] [+] EMBL CD135104 [ ATGACGGACCCAAACAACGGTGAAAAACTGGTTTTCGACAGACGAACAGGTAGTCATGTCAAGGATGCTGTGTACAGTGAAGATGGGTTGATCCGCTTTCCAGACGGTAGGCGCGTTGCACCAGGTTCCACTGACAACAGTTCACAGTATCTAATTCACTTCGACTCTGCAACGAAGGAGAACTTGGTTTTTGACAGACATACTGGTGAACAAGTCGA ] [+] EMBL CD182195 [ GTAAAGCATAGGTACATTATCCTACAGGAGACAATCGAAAATACCACATTCGTAGTCGACACCAAATCAGGTCAGAAAATTGATGGGGCAATTGTTTTGGACAATGGTCTCGTCAAGCTACCCAATGGAAATCTGGTTGCACCCAGCTCAAACACAAGCACAAATTACATGGTGGTCGAATCGACTGAGGGCGAAGAGAAT ] [+] EMBL CD130325 [ AGGTACATTATCCTACAGGAGACAATCGAAAATACCACATTCGTAGTCGACACCAAATCAGGTCAGAAAATTGATGGGGCAATTGTTTTGGACAATGGTCTCGTCAAGCTACCCAATGGAAATCTGGTTGCACCCAGCTCAAACACAAGCACAAATTACATGGTGGTCGAATTGACTGAGGGCGAAGAGAATCCAGTGGTATTCGATCGCAGGACAGGTGAGCAAATCTCAGATGCTTACCTAGATAAGGATGGTGTCATACATTTGCCAGATGGAAGTTTGGCTATCTCGGCGTCAGAAACTATGGATCGCTACCTTGTGGCACNNAGATAACTGACAGGAGACCCTGTGATTTTCGATCGACGCCTCGNAACAGAACTAGTAAATGCTACGCTCCACCCATATGGAATGATCAANTTAGACACTGGACAGCTCGTAGCTCCCTCTCTCGGGAAAGGTC] consensusID : consensus_9673#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 352 fasta sequence [TACCACATTCGTAGTCGACACCAAATCAGGTCAGAAAATTGATGGGGCAATTGTTTTGGACAATGGTCTCGTCAAGCTACCCAATGGAAATCTGGTTGCACCCAGCTCAAACACAAGCACAAATTACATGGTGGTCGAATTGACTGAGGGCGAAGAGAATCCAGTGGTATTCGATCGCAGGACAGGTGAGCAAATCTCAGATGCTTACCTAGATAAGGATGGTGTCATACATTTGCCAGATGGAAGTTTGGCTATCTCGGCGTCAGAAACTATGGATCGCTACCTTGTGGCACAAGATAAACTGACAGGAGACCCTGTGATTTTCTGATCGACGCCTGGGGCTCCCGCAGAN] [-] EMBL CD189222 [TACCACATTCGTAGTCGACACCAAATCAGGTCAGAAAATTGATGGGGCAATTGTTTTGGACAATGGTCTCGTCAAGCTACCCAATGGAAATCTGGTTGCACCCAGCTCAAACACAAGCACAAATTACATGGTGGTCGAATTGACTGAGGGCGAAGAGAATCCAGTGGTATTCGATCGCAGGACAGGTGAGCAAATCTCAGATGCTTACCTAGATAAGGATGGTGTCATACATTTGCCAGATGGAAGTTTGGCTATCTCGGCGTCAGAAACTATGGATCGCTACCTTGTGGCACAAGATAAACTGACAGGAGACCCTGTGATTTTCTGATCGACGCCTGGGGCTCCCGCAGAN] [-] EMBL CD186718 [ ctagTGGAAATCTGGTTGCACCCAGCTCAAACACAAGCACAAATTACATGGTGGTCGAATTGTCTGAGGGCGAAGAGAATCCAGTGGTATTCGATCGCAGGACAGGTGAGCAAATCTCAGATGCTTACCTAGATAAGGATGGTGTCATACATTTGCCAGATGGAAGTTTGGCTATCTCGGCGTCAGAAACTATGGATCGCTACCTTGTGGCACAAGATAAACTGACAGGAGACCCTGTGATTTTC GATCGAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9673#0 AACTGACAGGAGACCGTGTGATTTTCGATCGACGCCTCGGAACAGAACTAGTAAATGCTA 60 consensus_9673#1 ------------------------------------------------------------ consensus_9673#0 CGCTCCACCATAATGGAATGATCAAATTAGACACTGGACAGCTCGTAGCTCCCTCCTCTC 120 consensus_9673#1 ------------------------------------------------------------ consensus_9673#0 GGGAAGGCTCTAAATACATGTTGGTCACAGATGAAGACAACCAAACCCTTCTAGTTTACG 180 consensus_9673#1 ------------------------------------------------------------ consensus_9673#0 ATCGTTTTACAGGAGAACAGATCAAGGGTGCACAGGTTGATCCCAACGGTTTGATTCTGT 240 consensus_9673#1 ------------------------------------------------------------ consensus_9673#0 TCGAAGATGGACGCATGGCCATTGAGCCATCATCTAAACTAGATAGATATGTTATAATGA 300 consensus_9673#1 ------------------------------------------------------------ consensus_9673#0 CGGACCCAAACAACGGTGAAAAACTGGTTTTCGACAGACGAACAGGTAGTCATGTCAAGG 360 consensus_9673#1 ------------------------------------------------------------ consensus_9673#0 ATGCTGTGTACAGTGAAGATGGGTTGATCCGCTTTCCAGACGGTAGGCGCGTTGCACCAG 420 consensus_9673#1 ------------------------------------------------------------ consensus_9673#0 GTTCCACTGACAACAGTTCACAGTATCTAATTCACTTCGACTCTGCAACGAAGGAGAACT 480 consensus_9673#1 ------------------------------------------------------------ consensus_9673#0 TGGTTTTTGACAGACATACTGGTGAACAAGTCGAGGGCGCCCCAGTAGATTCACGAGGTT 540 consensus_9673#1 ------------------------------------------------------------ consensus_9673#0 TAATACTTCTCCCCGACGGTAAGTTGCATCTAGATCAGAACCAAGTAAAGCATAGGTACA 600 consensus_9673#1 ------------------------------------------------------------ consensus_9673#0 TTATCCTACAGGAGACAATCGAAAATACCACATTCGTAGTCGACACCAAATCAGGTCAGA 660 consensus_9673#1 -------------------------TACCACATTCGTAGTCGACACCAAATCAGGTCAGA 35 *********************************** consensus_9673#0 AAATTGATGGGGCAATTGTTTTGGACAATGGTCTCGTCAAGCTACCCAATGGAAATCTGG 720 consensus_9673#1 AAATTGATGGGGCAATTGTTTTGGACAATGGTCTCGTCAAGCTACCCAATGGAAATCTGG 95 ************************************************************ consensus_9673#0 TTGCACCCAGCTCAAACACAAGCACAAATTACATGGTGGTCGAATCGACTGAGGGCGAAG 780 consensus_9673#1 TTGCACCCAGCTCAAACACAAGCACAAATTACATGGTGGTCGAATTGACTGAGGGCGAAG 155 ********************************************* ************** consensus_9673#0 AGAATCCAGTGGTATTCGATCGCAGGACAGGTGAGCAAATCTCAGATGCTTACCTAGATA 840 consensus_9673#1 AGAATCCAGTGGTATTCGATCGCAGGACAGGTGAGCAAATCTCAGATGCTTACCTAGATA 215 ************************************************************ consensus_9673#0 AGGATGGTGTCATACATTTGCCAGATGGAAGTTTGGCTATCTCGGCGTCAGAAACTATGG 900 consensus_9673#1 AGGATGGTGTCATACATTTGCCAGATGGAAGTTTGGCTATCTCGGCGTCAGAAACTATGG 275 ************************************************************ consensus_9673#0 ATCGCTACCTTGTGGCACNNAGATAACTGACAGGAGACCCTGTGATTTTC-GATCGACGC 959 consensus_9673#1 ATCGCTACCTTGTGGCACAAGATAAACTGACAGGAGACCCTGTGATTTTCTGATCGACGC 335 ****************** ************************** ********* consensus_9673#0 CTCGNAACAGAACTAGTAAATGCTACGCTCCACCCATATGGAATGATCAANTTAGACACT 1019 consensus_9673#1 CTGGG----GCTCCCGCAGAN--------------------------------------- 352 ** * * * * * * consensus_9673#0 GGACAGCTCGTAGCTCCCTCTCTCGGGAAAGGTC 1053 consensus_9673#1 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||