These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9674#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 988 fasta sequence [AATCCAGATTTGTCTTCTGCACGCGCATTCTTTCGTCTAGTGGATTCTATTCGAGCGCGCCTTGAACCCCAAACCGTCTTAAGAATAGCTGAAACTGCCTCACAAAGTCGTGGTCGACGTCTTTCATTATCAGAACCATTTGATAATGATGGGGTAAGAGATGAAAGAGATGAAGATGCATCTAGTGATGATAGTCACTCTGATCATAGTGATGAGGAGCGTCGTGGAAAAAGCCCCATTGATACCATTCCTCTGTCAGATCCTGAGTTTGATGAACTAGATGATCCTGAGCCTGCTAAACAAGAAATGCGCTCTCGTCTTAAAGCACGTCGACGAATTTTACGGGAAAGTGCAATGAAACGTAATTTGAAAATATCATCAGAAGATAATGCCGATGAACAGGTTGGTGTAAGAAGTGATTCTGTCGAAAAGTTGCCATTTACCACAGCACCTCAAGTGTCTGAACTTTCTCCTGGAGTGACAAATTTAGCTATTGAATTATTTTATTC-TGCTATGTTGATCGCTGGTCATAAAACAATCAGTCACACATTTGCATTCATAAAAAAGTATGCTGCTGTCATCCGGACTCTTACATCTACCGTTGAAACTCAAGTAGAAGCTTTACATGTAATTCAGGCGGTCTGGGCTAATAATCCACAAATGATTGTCATTATTACAGAACACATGTGTCGTGTTGGTTTGATTGATCCGGAAGCGGTTGTTCGATGGGCATATTCACCTATAATGACAACTTTAACAGATGATACAGTCAATTTGAACTCTGCTAATGCTCGTCCAAAAATTTTAGACTTTTACGTTTGGGAGTGCTTAAGTCGAACTCTTGTTCGTGTTGGTAGGCGCGTTACTCGAATTACAAATAGACTAGAACTGGCAAAAGAAACGATGGAAATTAACAGGCGTTCTTCTCCATATTCGACTCCTGATCGTGAAGACGCTGACCAGGGAGGAGATGGTGATAGTTTCTCAC] [+] EMBL CD156540 [AATCCAGATTTGTCTTCTGCACGCGCATTCTTTCGTCTAGTGGATTCTATTCGAGCGCGCCTTGAACCCCAAACCGTCTTAAGAATAGCTGAAACTGCCTCACAAAGTCGTGGTCGACGTCTTTCATTATCAGAACCATTTGATAATGATGGGGTAAGAGATGAAAGAGATGAAGATGCATCTAGTGATGATAGTCACTCTGATCATAGTGATGAGGAGCGTCGTGGAAAAAGCCCCATTGATACCATTCCTCTGTCAGATCCTGAGTTTGATGAACTAGATGATCCTGAGCCTGCTAAACAAGAAATGCGCTCTCGTCTTAAAGCACGTCGACGAATTTTACGGGAAAGTGCAATGAAACGTAATTTGAAAATATCATCAGAAGATAATGCCGATGAACAGGTTGGTGTAAGAAGTGATTCTGTCGAAAAGTTGCCATTTACCACAGCACCTCAAGTGTCTGAACTTTCTCCTGGAGTGACAAATTTAGCTATTGAATTATTTTATTC TGCTATGTTGATCGCTGGTCAT AAACAATCAGTCACACATTTGCATTCATAAAAAAGTATGCTGCTGTCATCCGGACTCTTACATCTACCGT ] [+] EMBL CD063942 [ TCTGTCAGATCCTGAGTTTGAT ACTAGAT ATCCTGAGCCTGCTAAACAAGAAATGCGCTCTCGTCTTAAAGCACGTCGACGAATTTTACGGGAAAGTGCAATGAAACGTAATTTGAAAATATCATCAGAAGATAATGCCGATGAACAGGTTGGTGTAAGAAGTGATTCTGTCGAAAAGTTGCCATTTACCACAGCACCTCAAGTGTCTGAACTTTCTCCTGGAGTGACAAATTTAGCTATTGAATTATTTTATTC TGCTATGTTGATCGCTGGTCATAAAACAATCAGTCACACATTTGCATTCATAAAAAAGTATGCTGCTGTCATCCGGACTCTTACATCTACCGTTGAAACTCAAGTAGAAGCTTTACATGTAATTCAGGCGGTCTGGGCTAATAATCCACAAATGATTGTCATTATTACAGAACACATTTGTCGTGTTGGggataacat ] [+] EMBL CD112679 [ GTCTGAACTTTCTCCTGGAGTGACAAATTTAGCTATTGAATTATTTTATTCNTGCTATGTTGATCGCTGGTCATAAAACAATCAGTCACACATTTGCATTCATAAAAAAGTATGCTGCTGTCATCCGGACTCTTACATCTACCGTTGAAACTCAAGTAGAAGCTTTACATGTAATTCAGGCGGTCTGGGCTAATAATCCACAAATGATTGTCATTATTACAGAACACATGTGTCGTGTTGGTTTGATTGATCCGGAAGCGGTTGTTCGATGGGCATATTCACCTATAATGACAACTTTAACAGATGATACAGTCAATTTGAACTCTGCTAATGCTCGTCCAAAAATTTTAGACTTTTACGTTTGGGAGTGCTTAAGTCGAACTCTTGTTCGTGTTGGTAGGCGCGTTACTC ] [+] EMBL CD189750 [ TTTAGCTATTGAATTATTTTATTC TGCTATGTTGATCGCTGGTCATAAAACAATCAGTCACACATTTGCATTCATAAAAAAGTATGCTGCTGTCATCCGGACTCTTACATCTACCGTTGAAACTCAAGTAGAAGCTTTACATGTAATTCAGGCGGTCTGGGCTAATAATCCACAAATGATTGTCATTATTACAGAACACATGTGTCGTGTTGGTTTGATTGATCCGGAAGCGGTTGTTCGATGGGCATATTCACCTATAATGACAACTTTAACAGATGATACAGTCAATTTGAACTCTGCTAATGCTCGTCCAAAAATTTTAGACTTTTACGTTTGGGAGTGCTTAAGTCGAACTCTTGTTCGTGTTGGTAGGCGCGTTACTCGAATTACAAATAGACTAGAACTGGCAAAAGAAACGATGGAAATTAACAGGCGTTCTTCTCCATATTCGACTCCTGATCGTG ] [+] EMBL CD133064 [ TTTAGCTATTGAATTATTTTATTC TGCTATGTTGATCGCTGGTCATAAAACAATCAGTCACACATTTGCATTCATAAAAAAGTATGCTGCTGTCATCCGGACTCTTACATCTACCGTTGAAACTCAAGTAGAAGCTTTACATGTAATTCAGGCGGTCTGGGCTAATAATCCACAAATGATTGTCATTATTACAGAACACATGTGTCGTGTTGGTTTGATTGATCCGGAAGCGGTTGTTCGATGGGCATATTCACCTATAATGACAACTTTGACAGATGATACAGTCAATTTGAACTCTGCTAATGCTCGTCCAAAAATTTTAGACTTTTACGTTTGGGAGTGCTTAAGTCGAACTCTTG ] [+] EMBL CD163429 [ AAAGTATGCTGCTGTCATCCGGACTCTTACATCTACCGTTGAAACTCAAGTAGAAGCTTTACATGCTATTCAGGCGGTCTGGGCTAATAATCCACAAATGATTGTCATTATTACAGAACACATGTGTCGTGTTGGTTTGATTGATCCGGAAGCGGTTGTTCGATGGGCATATTCACCTATAATGACAACTTTAACAGATGATACAGTCAATTTGAACTCTGCTAATGCTCGTCCAAAAATTTTAGACTTTTACGTTTGGGAGTGCTTAAGTCGAACTCTTGTTCGTGTTGGTAGGCGCGTTACTCGAATTACAAATAGACTAGAACTGGCAAAAGAAACGATGGAAATTAACAGGCGTTCTTCTCCATATTCGACTCCTGATCGTGAAGACGCTGACCAGGGAGGAGATGGTGATAGTTTCTCAC] consensusID : consensus_9674#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 739 fasta sequence [GCCAANACTCGGCTCGAGGGCCAATTTGAACTCTGCTAATGCTCGTCCAAAAATTTTAGACTTTTACGTTTGGGAGTGCTTAAGTCGAACTCTTGTTCGTGTTGGTAGGCGCGTTACTCGAATTACAAATAGACTAGAACTGGCAAAAGAAACGATGGAAATTAACAGGCGTTCTTCTCCATATTCGACTCCTGATCGTGAAGACGCTGACCAGGGAGGAGATGGTGATAGTTTCTCACGAACTGGAGTCGACAGTGATTCATTCTTTAAAAAACCGAAAGATTCCATTTCTGGGAGAGTTAAAGTCAGTGATCGACGAAAGCTTATGGCAGGCTGTGAACTGGTTTCTTCGTCTGACGATGAGGCTTATGGTGGAGGAAAGGATAATGTCGGTGGTCGAGTAGCCAGACTAGAAGAAGCCAGATGTGAAGCAGTTCGTAGTCAATGTGCTGTCATTACACTTCTTCTGCATCGTCATGCTAGACTTACTGCTGAACTTGCATCTGAAATGTCTGGACCTTCTCAAAACCATTCATTCAATACGGATTCTCCATTTTTCTTACATGAACCAACTCAACCGAAAAGTTTGTCTGACGAAGCTTTAAGAAATATAATGTTTTGGTTAAAAGGTCGGTTAGTGCAGGTGGTTCTTGACATTGCGATCAATAATACCTTATCTGGATAACCTTGATGAATTTATTTGTGGAGCTCATCCTGAAGTTCAAGGCGTGTTTCAGCA] [+] EMBL CD080706 [GCCAANACTCGGCTCGAGGGCCAATTTGAACTCTGCTAATGCTCGTCCAAAAATTTTAGACTTTTACGTTTGGGAGTGCTTAAGTCGAACTCTTGTTCGTGTTGGTAGGCGCGTTACTCGAATTACAAATAGACTAGAACTGGCAAAAGAAACGATGGAAATTAACAGGCGTTCTTCTCCATATTCGACTCCTGATCGTGAAGACGCTGACCAGGGAGGAGATGGTGATAGTTTCTCACGAACTGGAGTCGACAGTGATTCATTCTTTAAAAAACCGAAAGATTCCATTTCTGGGAGAGTTAAAGTCAGTGATCGACGAAAGCTTATGGCAGGCTGTGAACTGGTTTCTTCGTCTGACGATGAGGCTTATGGTGGAGGAAAGGATAATGTCGGTGGTCGAGTAGCCAGACTAGAAGAAGCCAGATGTGAAGCAGTTCGTAGTCAATGTGCTGTCATTACACTTCTTCTGCATCGTCATGCTAGACTTACTGCTGAACTTGCATCTGAAATGTCTGGACCTTCTCAAAACCATTCATTCAATACGGATTCTCCATTTTTCTTACATGAACCAACTCAACCGAAAAGTTTGTCTGACGAAGCTTTAAGAAATATAATGTTTTGGTTAAAAGGTCGGTTAGTGCAGGTGGTTCTTGACATTGCGATCAATAATACCTTATCTGGATAACCTTGATGAATTTATTTGTGGAGCTCATCCTGAAGTTCAAGGCGTGTTTCAGCA] [+] EMBL CD111958 [ CTGACCAGGGAGGAGATGGTGATAGTTTCTCACGAACTGGAGTCGACAGTGATTCATTCTTTAAAAAACCGAAAGATTCCATTTCTGGGAGAGTTAAAGTCAGTGATCGACGAAAGCTTATGGCAGGCTGTGAACTGGTTTCTTCGCCTGACGATGAG ] [-] EMBL CD133649 [ AAGGATAATGTCGGTGGTCGAGTAGCCAGACTAGAAGAAGCCAGATGTGAAGCAGTTCGTAGTCAATGTGCTGTCATTACACTTTTTCTGCATCGTCATGCTAGACTTACTGCTGAACTTGCATCTGAAATGTCTGGACCTTCTCAAAACCATTCATTCAATACGGATTCTCCATTTTTCTTACATGAACCAACTCAACCGAAAAGTTTGTCTGACGAAGCTTTAAGAAATATAATGTTTTGGTTAAAAGGT ] consensusID : consensus_9674#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [GTGATAGTTTCTCACGAACTGGAGTCGACAGTGATTCATTCTTTAAAAAACCGAAAGATTCCATTTCTGGGAGAGTTAAAGTCAGTGATCGACGAAAGCTTATGGCAGGCTGTGAACTGGTTTCTTCGTCTGACGATGAGGCTTATGGTGGAGGAAAGGATAATGTCGGTGGTCGAGTAGCCAGACTAGAAGAAGCCTAGTATCAGAATTCTTGACCTTTATTTATTTTCCTTGAAAAAGTAGTTACTTCTAAGTACTGTTTTCATTTCTTTCCTTTTGAATCATAGTAATTCAAAATATTGTTTCCTTTTTAGATTCTTAGGCTAGTTTAGTGAACTTTGCCATCTTGAGAAATAAGCGGCCGACAGGATCTTGAGGTTTTTTTATCTAAGTATGTAGGTCTTCATTAATAACTTTTTTTTCCGGGCAAATATTTCCTAGGTTTCTTCAGGTTAACAAATAAATGAATTATTTTGGTTTGGCAATTCTGGTAAATGCTTCATATTCGACTCCTGATCGTGA] [+] EMBL CD188823 [GTGATAGTTTCTCACGAACTGGAGTCGACAGTGATTCATTCTTTAAAAAACCGAAAGATTCCATTTCTGGGAGAGTTAAAGTCAGTGATCGACGAAAGCTTATGGCAGGCTGTGAACTGGTTTCTTCGTCTGACGATGAGGCTTATGGTGGAGGAAAGGATAATGTCGGTGGTCGAGTAGCCAGACTAGAAGAAGCCTAGTATCAGAATTCTTGACCTTTATTTATTTTCCTTGAAAAAGTAGTTACTTCTAAGTACTGTTTTCATTTCTTTCCTTTTGAATCATAGTAATTCAAAATATTGTTTCCTTTTTAGATTCTTAGGCTAGTTTAGTGAACTTTGCCATCTTGAGAAATAAGCGGCCGACAGGATCTTGAGGTTTTTTTATCTAAGTATGTAGGTCTTCATTAATAACTTTTTTTTCCGGGCAAATATTTCCTAGGTTTCTTCAGGTTAACAAATAAATGAATTATTTTGGTTTGGCAATTCTGGTAAATGCTTCATATTCGACTCCTGATCGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9674#1 ------------------------------------------------------------ consensus_9674#2 ------------------------------------------------------------ consensus_9674#0 AATCCAGATTTGTCTTCTGCACGCGCATTCTTTCGTCTAGTGGATTCTATTCGAGCGCGC 60 consensus_9674#1 ---------------------------GCCAANACTCGGCTCGAGGGCCAATTTGAACTC 33 consensus_9674#2 ------------------------------------------------------------ consensus_9674#0 CTTGAACCCCAAACCGTCTTAAGAATAGCTGAAACTGCCTCACAAAGTCGTGGTCGACGT 120 consensus_9674#1 TGCTAATGCTCGTCCAAAAATTTTAGACTTTTACGTTTGGGAGTGCTTAAGTCGAACTCT 93 consensus_9674#2 ------------------------------------------------------------ consensus_9674#0 CTTTCATTATCA--GAACCATTTGATAATGATGGGGTAAGAGATGAAAGAGATGAAGATG 178 consensus_9674#1 TGTTC-GTGTTGGTAGGCGCGTTACTCG-AATTACAAATAGACTAGAACTGGCAAAAGAA 151 consensus_9674#2 ------------------------------------------------------------ consensus_9674#0 CATCTAGTGATGATAGTCACTCTGATCATAGTGATGAGGAGCGTCGTGGAAAAAGCCCCA 238 consensus_9674#1 ACGATGGAAATTAACAGGC-GTTCTTCTCCATATTCGACTCC-TGATCGTGAAGACGCTG 209 consensus_9674#2 ------------------------------------------------------------ consensus_9674#0 TTGATACCATTCCTCTGTCAGATCCTGAGTTTGATGAACTAGATGATCCTGAGCCTGCTA 298 consensus_9674#1 ACCAGGGAGGAGATGGTGAT-----AGTTTCTC-ACGAACT-----GGAGTCGACAGTGA 258 consensus_9674#2 ---------------GTGAT-----AGTTTCTC-ACGAACT-----GGAGTCGACAGTGA 34 consensus_9674#0 AACAAGAAATGCGCTCTCGTCTTAAAGCACGTCGACGAATTTTACGGGAAAGTGCAATGA 358 * * ** ** ***** * *** ** *** consensus_9674#1 TTCATTCTTTAAAAA----ACCGAAAGATTCCATTTCTGGGAGAGTTAAAGTCAGTGATC 314 consensus_9674#2 TTCATTCTTTAAAAA----ACCGAAAGATTCCATTTCTGGGAGAGTTAAAGTCAGTGATC 90 consensus_9674#0 AACGTAATTTGAAAATATCATCAGAAGATAATGCCGATGAACAGGTTGGTGTAAG-AAGT 417 * * *** **** * * ***** ** *** ** ** * consensus_9674#1 GACGAAAGCTTATGGCAGGCTGTGAACTGGTTTCTTCGTCTGACGATGAGGCTTATGGTG 374 consensus_9674#2 GACGAAAGCTTATGGCAGGCTGTGAACTGGTTTCTTCGTCTGACGATGAGGCTTATGGTG 150 consensus_9674#0 GATTCTGTCGAAAAGTTGCCATTTACCACAGCACCTCAAGTGTC--TGAACTTTCTCCTG 475 ** * * * * * * * * * ** ** * *** ** * ** consensus_9674#1 GAGGAAAGGATAATGTCGGTGG-TCGAGTAGCCAGACTAGAAGAA--GCCAGATGTGAAG 431 consensus_9674#2 GAGGAAAGGATAATGTCGGTGG-TCGAGTAGCCAGACTAGAAGAA--GCCTAGTATCAGA 207 consensus_9674#0 GAGTGACAAATTTAGCTATTGAATTATTTTATTCTGCTATGTTGATCGCTGGTCATAAAA 535 *** * ** * ** * * *** * ** * * consensus_9674#1 CAGTTCGTAGTCAATGTGCTGTCATTACA-------CTTCTTCT--GCATCGTCATGCTA 482 consensus_9674#2 ATTCTTGACCTTTATTTATTTTCCTTGAAAAAGTAGTTACTTCTAAGTACTGTTTTCATT 267 consensus_9674#0 CAATCAGTCACACATTTGCATTCATAAAAAAG---TATGCTGCTGTCATCCGGACTCTTA 592 * ** * ** * * * ** ** * * * consensus_9674#1 GACTTACTGCTGAAC--TTGCATCTGAAATGTCTGGACCTTCTCAAAACCAT-TCATTCA 539 consensus_9674#2 TCTTTCCTTTTGAATCATAGTAATTCAAAATATTGTTTCCTTTTTAGATTCT-TAGGCTA 326 consensus_9674#0 CATCTACCGTTGAAA---CTCAAGTAGAAGCTTTACATGTAATTCAGGCGGTCTGGGCTA 649 * * **** * * ** * * * * * * consensus_9674#1 AT---ACGGATTCTCCATTTTTCTTACATGAAC---CAACTCAACCGAAAAGTTTGTCTG 593 consensus_9674#2 GTTTAGTGAACTTTGCCATCTTGAGAAATAAGCGGCCGACAGGATCTTGAGGTTTTTTTA 386 consensus_9674#0 AT-------AATCCACAAATGATTGTCATTATTACAGAACACATGTGTCGTGTTGGTTTG 702 * * * * ** * ** *** * * consensus_9674#1 ACGAAGCTTTAAGAAATA---TAATG-----TTTTGGTTAAAAGGTCGGTTAGTGCAGGT 645 consensus_9674#2 TCTAAGTATGTAGGTCTTCATTAATA-----ACTTTTTTTTCCGGGCAAATATTTCCTAG 441 consensus_9674#0 ATTGATCCGGAAGCGGTTGTTCGATGGGCATATTCACCTATAATGACAACTTTAACAGAT 762 * ** * ** * * * * * * consensus_9674#1 GGTTCT-TGACATTGCGATCAATAA-TACCTTATCTGGATAACCTTGATGAATTTATTTG 703 consensus_9674#2 GTTTCT-TCAGGTTA--ACAAATAAATGAATTATTTTGGT----TTGGCAATTCTGGTAA 494 consensus_9674#0 GATACAGTCAATTTGAACTCTGCTAATGC-TCGTCCAAAAATTTTAGACTTTTACGTTTG 821 * * * * * ** * * * * * * * * consensus_9674#1 TG-GAGCTCATCCTGAAGTTCAAGGCGTGTTTCAGCA----------------------- 739 consensus_9674#2 AT-GC-TTCATATTCGACTCCTGATCGTGA------------------------------ 522 consensus_9674#0 GGAGTGCTTAAGTCGAACTCTTGTTCGTGTTGGTAGGCGCGTTACTCGAATTACAAATAG 881 * * * * * **** consensus_9674#1 ------------------------------------------------------------ consensus_9674#2 ------------------------------------------------------------ consensus_9674#0 ACTAGAACTGGCAAAAGAAACGATGGAAATTAACAGGCGTTCTTCTCCATATTCGACTCC 941 consensus_9674#1 ----------------------------------------------- consensus_9674#2 ----------------------------------------------- consensus_9674#0 TGATCGTGAAGACGCTGACCAGGGAGGAGATGGTGATAGTTTCTCAC 988 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||