These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9676#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 953 fasta sequence [AAAGCATTTATTAAAAAATGACCAAAAAAAGATAATACGTATTAAGCCACATACCACTATATTATCTAAAG-GGAAATACATTTTACACATATGAAACGAAAGTTCAGGCAAGCAACTTCGAATAAAAAAGGATGGGCAATGTGAGACTAGATTTGTACATAGTTTTCCCACACAAGTTTATTTTTTTAGATATGAACCAGACAT-AAGGCATGTACAATAAAACAGATTTTTTAGCAGATATTAAAAGATGAAAAATTAA-TTAACATTATTCAATTAGCTTCTTAGACTTGAAATAACG-TCTTAAATAAAGGACCTG-CCAACATGCGAAACCGATGAGGATTACCATTGAAAGGATTG-AAAAGTAGAGGACCCTTGTGTGAGTAGATTCATTGATGTTTCGCATTTTGCTACTTTTTGAATGCATGAGAACGAAATCTTGCACGATTTCATCAGCTAGACTTTCAAG-TTTTTTCAGTAGCACTTCGATTGGTTGTAATTT-CTCTGCTTTCGCCATCTTATCAAAATCCTTGGCCTCCGTACCGTGTTTGATATTAAGAAAGACTTCTTGCTCTGTATCAGTATTATCTGGCTGACTTTCGAAGCACACCTCAAATAGATCAAAGTCTTCTGTTGTGAATGCGAATTTTCCGTTT-CTTATATTATCTCTCTGATACAGTATATGTTTTTTCACATCACGGACTTTGATATGGGTTGTGTGTTCATAGGGAGCAGTAATCTCATACTCACCATGTACAATAACGTCTTTGTGTGCCTCATCTTGAATACACTTTGTAACACCGTTTTTAAGCTTAAACCTCAGCCCTTTAATTGTTGATAAGCAACAAGACAGTAACCATATAGCTGAGACAACACAAATGAACCTCATTTAGTACGTTGCGTACACGTCTAAACGCCAAGTTCACGAAACCTCTACATTAGCCCAGAATAAGGCA] [+] EMBL AI975868 [AAAGCATTTATTAAAAAATGACCAAAAAAAGATAATACGTATTAAGCCACATACCACTATATTATCTAAAG GGAAATACATTTTACACATATGAAACGAAAGTTCAGGCAAGCAACTTCGAATAAAAAAGGATGGGCAATGTGAGACTAGATTTGTACATAGTTTTCCCACACAAGTTTATTTTTTTAGATATGAACCAGACAT AAGGCATGTACAATAAAACAGATTTTTTAGCAGATATTAAAAGATGAAAAATTAA TTAACATTATTCAATTAGCTTCTTAGACTTGAAATAACG TCTTAAATAAAGGACCTG CCAACATGCGAAACCGATGAGGATTACCATTGAAAGGATTG AAAAGTAGAGGACCCTTGTGTGAGTAGATTCATTGATGTTTCGC ] [+] EMBL CD074983 [ CATACCAATATATTATCTAAAGAGGAAATACATTTTACACATATGAAACGATTGTTCAGGCAAGCAACTTCGAATAAAAAAGGATGGGCAATGTGAGACTAGATTTGTACATAGTTTTCCCACACAAGTTTATTTTTTTAGATATGAACCAGACAT AAGGCATGTACAATAAAACAGATTTTTTAGCAGATATTAAAAGATGAAAAATTAA TTAACATTATTCAATTAGCTTCTTAGACTTGAAATAACG TCTTAAATAAAGGACCTG CCAACATGCGAAACCGATGAGGATTACCATTGAAAGGATTG AAAAGTAGAGGACCCTTGTGTGAGTAGATTCATTGATGTTTCGCATTTTGCTACTTTTTGAATGCATGAGAACGAAATCTTGCACGATTTCATCAGCTAGACTTTCAAG TTTTTTCAGTAGCACTTCGATTGGTTGTAATTT CTCTGCTTTCGCCATCTTATCAAAATCCTTGGCCTCCGTACCGTGTTTGATATTAAGAAAGACTTCTTGCTCTGTATCAGTATTATCTGGCTGACTTTCGAAGCACACCTCAAATAGATCAAAGTCTTCTGTTGTGAATGCGAATTTTCCGTTT CTTATATTATCTCTCTGATACAGNATATGTTTTTTCACATCACGGACTTTGATATGGGTTGTGTGTTCATGGGGAGCAGTAATCTCATACTCACCATGTACAATAACGTCTTTGTGTGCCTCATCTTGAATACAC ] [-] EMBL CD134239 [ AGTTTTCCCACACAAGTTTA TTTTTCAGATATGAACCAGACAT AAGGCATGTACAATAAAACAGATTTTTTAGCAGATATTAAAAGATGAAAAATTAA TTTACATTATTCAATTAGCTTCTTAGACTTGAAATAACG TCTTAAATAAAGGACCTG CCAACATGCGAAACCGATGAGGATTACCATTGAAAGGATTG AAAAGTAGAGGACCCTTGTGTGAGTAGATTCATTGATGTTTCGCATTTTGCTACTTTTTGAATGCATGAGAACGAAATCTTGCACGATTTCATCAGCTAGACTTTCAAG TTTTTTCAGTAGCACTTCGATTGGTTGTAATTT CTCTGCTTTCGCCATCTTATCAAAATCCTTGGCCTCCGTACCGTGTTTGATATTAAGAAAGACTTCTTGCTCTGTATCAGTATTATCTGGCTGACTTTCGAAGCACACCTCAAATAGATCAAAGTCTTCTGTTGTGAATGCGAATTTTCCGTTT CTTATATTATCTCTCTGATACAGTATATGTTTTTTTACATCACGGACTTTGATATGGGTTGTGTGTTCATAGGGAGCAGTAATCTCATACTCACCATGTACAATAACGTCTTTGTGTGCCTCATCT ] [+] EMBL BF936955 [ CCAGACAT AAGGCATGTACAATAAAACAGATTTTTTAGCAGATGTTAAAAGATGAAAAATTAA TTAACATTATTCAATTAGCTTCTTAGACTAGAAATAACG TCTTAAATAAAGGACCTG CCAACATGCGAAACCGATGAGGATTACCATTGA ] [-] EMBL BF936672 [ CAGACATAAAGGCATGTACAATAAAACAGATTTTTTAGCAGATATTAAAAGATG AAAATTAATTTACCATTATTCAATTAGCTTCTTAGACTTGAAAT ACGTTCTTAAATAAAGGACCTG CCAACATGCGAAACCGATGAGGATTACCATTGAAAGGATTG AAAAGTAGAGGACCCTTGTGTGAGTAGATTCATTGATGTTTCGCATTTTGCTACTTTTTGAATGCATGAGAACGAAATCTTGCACGATTTCATCAGCTAGACTTTCAAG TTTTTTCAGTAGCACTTCGATTGGTTGTAATTT CTCTGCTTTCGCCATCTTATCAAAATCCTTGGCCTCCGTACCGTGTTTGATATTAAGAAAGACTTCTTGCTCTGTATCAGTATTATCTGGCTGACTTTCGAAGCACACCTCAAATAGATCAAAGTCTTCTGTTGTGAATGCGAATTTTCCGTTT CTTATATTATCTCTCTGATACAGTATATGTTTTTTCACATCACGGACTTTGATATGGGTTGTGTGTTCATGGGGAGCAGTAATCTCATACTCACCATGTACAATAACGTCTTTGTGTGCCTCATCTTGAATACACTTTGTAACACCGTTTTTAAGCTTAAACCTCAGCCCTTTAATTGTTGATAAGCAACAAGACAGTAACCATATAGCTGAGACAACACAAATGAACCTCATTTAGTACGTTGCGTAC ] [-] EMBL SM395 [ aAANGGACCTGCCCAAAATGCGAAACCGATGAGGATNACCATTGNAAGGATTGAAAAAGTAGAGGACCCTTGTGTGAGTAGATTCATTGATGTTTCGCATTTTGCTACTTTTTGAATGCATGAGNACGAAATCTTGCACGATTTCATCAGCTAGACTTTCAAGTTTTTTTCAGTAGCACNTCGATTGGTTGTAATTTNCTCTGCTTTCGCCATCTTANCCAAANCCTTGGCCTCCGTNCCGTGTTTGANATTAAGAAAGACTTCTTGCTCTGTATCAGTATTATCTGGCTGACTTTCGAAGCACACCTCCAATAGATCCAAGTCTTCTGTTGTGNATACGNATTTTCCGTTTNCTTctcg ] [-] EMBL CD132890 [ AAACCGATGAGGATTACCATTGAAAGGATTG AAAAGTAGAGGACCCTTGTGTGAGTAGATTCATTGATGTTTCGCATTTTGCTACTTTTTGAATGCATGAGAACGAAATCTTGCACGATTTCATCAGCTAGACTTTCAAG TTTTTTCAGTAGCACTTCGATTGGTTGTAATTT CTCTGCTTTCGCCATCTTATCAAAATCCTTGGCCTCCGTACCGTGTTTGATATTAAGAAAGACTTCTTGCTCTGTATCAGTATTATCTGGCTGACTTTCGAAGCACACCTCAAATAGATCAAAGTCTTCTGTTGTGAATGCGAATTTTCCGTTT CTTATATTATCTCTCTGATACAGTATATGTTTTTTCACATCACGGACTTTGATATGGGTTGT ] [-] EMBL CD137653 [ CCGATGAGGATTACCATTGAAAGGATTG AAAAGTAGAGGACCCTTGTGTGAGTAGATTCATTGATGTTTCGCATTTTGCTACTTTTTGAATGCATGAGAACGAAATCTTGCACGATTTCATCAGCTAGACTTTCAAG TTTTTTCAGTAGCACTTCGATTGGTTGTAATTT CTCTGCTTTCGCCATCTTATCAAAATCCTTGGCCTCCGTACCGTGTTTGATATTAAGAAAGACTTCTTGCTCTGTATCAGTATTATCTGGCTGACTTTCGAAGCACACCTCAAATAGATCAAAGTCTTCTGTTGTGAATGCGAATTTTCCGTTT CTTATATTATCTCTCTGATACAGTATATGTTTTTTCACATCACGGACTTTGATATGGGTTGTGTGTTCATAGGGAGCAGTAATCTCATACTCACCATGTACAATAAC ] [+] EMBL CD162966 [ CAAGTTTTTTTCAGTAGCACTTCGATTGGTTGTAATTT CTCTGCTTTCGCCATCTTATCAAAATCCTTGGCCTCCGTACCGTGTTTGATATTAAGAAAGACTTCTTGCTCTGTATCAGTATTATCTGGCTGACTTTCGAAGCACACCTCAAATAGATCAAAGTCTTCTGTTGTGAATGCGAATTTTCCGTTT CTTATATTATCTCTCTGATACAGTATATGTTTTTTCACATCACGGACTTTGATATGGGTTGTGTGTTCATAGGGAGCAGTAATCTCATACTCACCATGTACAATAACGTCTTTGTGTGCCTCATCTTGAATACACTTTGTAACACCGTTTTTAAGCTTAAACCTCAGCCCTTTAATTGTTGATAAGCAACAAGACAGTAACCATATAGCTGAGACAACACAAATGAACCTCATTTAGTACGTTGCGTACACGTCTAAACGCCAAGTTCACGAAACCTCTACATTAGCCCAGAATAAGGCA] [-] EMBL CD063631 [ GAATGCGAATTTTCCGTTT CTTATATTATCTCTCTGATACAGTATATGTTTTTTCACATCACGGACTTTGATATGGGTTGTGTGTTCATAGGGAGCAGTAATCTCATACTCACCATGTACAATAA ] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||