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Schistosoma mansoni
cluster # 9688 cluster # 9688       Sequences # 11       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9688#0 length = 1080 sequences # 8  
consensus_9688#1 length = 358 sequences # 3  

consensusID : consensus_9688#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1080
fasta sequence
                              [ATATTAAATTGCTAGCACAGTGATAATCCCTCTAGTTTTTTTTCTCGTTGATTTGAT-ATAGAAAAAACATGAAGAAAATCTCATTTTCTCCGGAAGTATGGACAAAGATATTTATTGTAGTGAATAGTTTATTTATAGTATTCAGTTTTATTATGTTTGCACTAGGTATTAGTGCATTAGATACATTACTTAAACATAATACAATTATACAAGTGGCACCACCAGCAATCTTTGGAACTGTTATATTTACAGGATTAGTTGGAATTATAGCATCAAGTGTTGGATTTCTTGGATTATGGAGAAAAATGAAAATGATTGCTTTTGTGCATATGATTGGTTTGGGTATAGCAACATTTTTAAATATATGTATTGCTATTGCAGCAGTTGCCACACAAGATCAATATGCATCAGATGTACAACAATCGTTGCTTAATTCTATATCAAATTATAATCAAACTTCATATTCAGTGGAATTCGATAAGTTACAGACTAGTTTCTATTGTTGTGGAGCTACCTCGTACAGAG-ATTATAGACAATATCAAATGAAGATACCACCGTC-TTGTA-GAGTTGGTG-AATTGACCTATGCAACAGGTTGTATTGAAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTTTTCTCACAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATGATTCGTAAATCTGATGATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGATCGTTATTATTATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCANTTNNTTTGGTTCTTTTCATTCCATTTTGGATTCTATCACTTTTGGGNTCTGGGCTAAACACATGAACTAATGTTACCCGACAATAACCATATAAGACGGNTATTACTTATTATTCAACTCATATCTTTGGACTATATCATGACTACATATTGGATGAGTCTCCAATGAATGCCATCCCA-TAGTATTTCTTAGGTGGCGGNGGTGGCA-GGTAACC-ATGTATTGTAATTACCTTTTTAATACATAAATCTAAAAGATGTATTATA]

[+] EMBL CD084135             [ATATTAAATTGCTAGCACAGTGATAATCCCTCTAGTTTTTTTTCTCGTTGATTAGAT ATAGAAAAAACATGAAGAAAATCTCATTTTCTCCGGAAGTATGGACAAAGATATTTATTGTAGTGAATAGTTTATTTATAGTATTCAGTTTTATTATGTTTGCACTAGGTATTAGTGCATTAGATACATTACTTAAACATAATACAATTATACAAGTGGCACCACCAGCAATCTTTGGAACTGTTATATTTACAGGATTAGTTGGAATTATAGCATCAAGTGTTGGATTTCTTGGATTATGGAGAAAAATGAAAATGATTGCTTTTGTGCATATGATTGGTTTGGGTATAGCAACATTTTTAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD196267             [                                                     TGATAATAGAAAAAACATGAAGAAAATCTCATTTTCTCCGGAAGTATGGACAAAGATATTTATTGTAGTGAATAGTTTATTCATAGTATTCAGTTTTATTATGTTTGCACTAGGTATTAGTGCATTAGATACATTACTTAAACATAATACAATTATACAAGTGGCACCACCAGCAATCTTTGGAACTGTTATATTTACAGGATTAGTTGGAATTATAGCATCAAGTGTTGGATTTCTTGGATTATGGAGAAAAATGAAAATGATTGCTTTTGTGCATATGATTGGTTTGGGTATAGCAACATTTTTAAATATATGTATTGCTATTGCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD196343             [                                                     TGATAATAGAAAAAACATGAAGAAAATCTCA TTTCTCCGGAAGTATGGACAAAGATATTTATTGTAGTGAATAGTTTATTTATAGTATTCAGTTTTATTATGTTTGCACTAGGTATTAGTGCATTAGATACATTACTTAAACATAATACAATTATACAAGTGGCACCACCAGCAATCTTTGGAACTGTTATATTTACAGGATTAGTTGGAATTATAGCATCAAGTGTTGGATTTCTTGGATTATGGAGAAAAATGAAAATGATTGCTTTTGTGCATATGATTGGTTTGGGTATAGCAACATTTTTAAATATATGTATTGCTATTGCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AW466250             [                                                                                                                                                                                                                                                                                                               AAAATGAAAATGATTGCTTTTGTGCATATGATTGGTTTGGGTATAGCAACATTTTTAAATATATGTATTGCTATTGCAGCAGTTGCCACACAAGATCAATATGCATCAGATGTACAACAATCGTTGCTTAATTCTATATCAAATTATAATCAAACTTCATATTCAGTGGAATTCGATAAGTTACAGACTAGTTTCTATTGTTGTGGAGCTACCTCGTACAGAG ATTATAGACAATATCAAATGAAGATACCACCGTC TTGTA NAGTTGGTG AATTGACCTATGCAACAGGTTGTATTGAAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTTTTCTCACAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATGATTCGTAAATCTGATGATGGAGTTGCTTTCTCTGCATAAACATTATATAC                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD171169             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATAAGTTACAGACTAGTTTCTATTGTTGTGGAGCTACCTCGTACAGAG ATTATAGACAATATCAAATGAAGATACCACCGTC TTGTA GAGTTGGTG AATTGACCTATGCAACAGGTTGTATTGAAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTTTTCTCACAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATG                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD171181             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATAAGTTACAGACTAGTTTCTATTGTTGTGGAGCTACCTCGTACAGAG ATTATAGACAATATCAAATGAAGATACCACCGTC TTGTA GAGTTGGTG AATTGACCTATGCAACAGGTTGTATTGAAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTTTTCTCACAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATG                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL SM929                [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGNTACCTCGTACAGAGNATTATAGACAATATCAAATGAAGATACCACCGNCNTNGTAGGAGTTGGTGNAATTGACCTATGCAACAGGTTGTNTTGAAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTNTNCTCACAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATGATTCGCAAATCTGATGATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGATCGTTATTATTATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCANTTNNTTTGGTTCTTTTCATTCCATTTTGGATTCTATCACTTTTGGGNTCTGGGCTAAACACATGAACTAATGTTACCCGACAATAACCATATAAGACGGNTATTACTTATTATTCAACTCATATCTTTGGACTATATCATGACTACATATTGGATGAGTCTCCAATGAATGCCATCCCA TAGTATTTCTTAGGTGGCGGNGGTGGCA GGTAACC ATGT                                             ]
[+] EMBL AI977163             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AACAGGTTGTATTGAAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTTTTCTCACAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATGATTCGTAAATCTGATGATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGATCGTTATTATTATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCA TTTTTTTTGTTCTTTTCATTCCATTTT GATTCTATCACTTTTTGTTTCTGGGCTAAACACATGAACTAATGTTA CCGACAATAAACATATAAGACGGTTATTACTTATTATTCAACTCATATCTTT GACTATATCATGACTACATATTGAATGAGTCTTCAATGAATGCCATTCCATTAGTATTTCTAAGTTGTCGTAGTTGCCATGGTAACCAATGTATTGTAATTACCTTTTTAATACATAAATCTAAAAGATGTATTATA]


>consensus_9688#0 ATATTAAATTGCTAGCACAGTGATAATCCCTCTAGTTTTTTTTCTCGTTGATTTGATATA GAAAAAACATGAAGAAAATCTCATTTTCTCCGGAAGTATGGACAAAGATATTTATTGTAG TGAATAGTTTATTTATAGTATTCAGTTTTATTATGTTTGCACTAGGTATTAGTGCATTAG ATACATTACTTAAACATAATACAATTATACAAGTGGCACCACCAGCAATCTTTGGAACTG TTATATTTACAGGATTAGTTGGAATTATAGCATCAAGTGTTGGATTTCTTGGATTATGGA GAAAAATGAAAATGATTGCTTTTGTGCATATGATTGGTTTGGGTATAGCAACATTTTTAA ATATATGTATTGCTATTGCAGCAGTTGCCACACAAGATCAATATGCATCAGATGTACAAC AATCGTTGCTTAATTCTATATCAAATTATAATCAAACTTCATATTCAGTGGAATTCGATA AGTTACAGACTAGTTTCTATTGTTGTGGAGCTACCTCGTACAGAGATTATAGACAATATC AAATGAAGATACCACCGTCTTGTAGAGTTGGTGAATTGACCTATGCAACAGGTTGTATTG AAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTTTTCTCA CAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATGATTCGTAAATCTGATG ATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGATCGTTATTATT ATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCANTTNNTTTGGTTCTTTTCATTCCA TTTTGGATTCTATCACTTTTGGGNTCTGGGCTAAACACATGAACTAATGTTACCCGACAA TAACCATATAAGACGGNTATTACTTATTATTCAACTCATATCTTTGGACTATATCATGAC TACATATTGGATGAGTCTCCAATGAATGCCATCCCATAGTATTTCTTAGGTGGCGGNGGT GGCAGGTAACCATGTATTGTAATTACCTTTTTAATACATAAATCTAAAAGATGTATTATA



consensusID : consensus_9688#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 358
fasta sequence
                              [ATGATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGASCGTTATTATTATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCATTTTTTTTGTTCTTTTCATTCCATTTTGATTCTATCACTTTTTGTGTCTGGGCTAAACACATGAACTAATGTTACCGACAATAAACATATAAGACGGTTATTACTTATTATTCAACTCATATCTTTGACTATARCATGACTACATATTGAATGAGTCTTCAATGAATGCCATTCCATTAGTATTTACTAAGTTGTCGTAGTTGCCATGGTAACCAATGTATTGTAATTACCTTTTTAATACATAAATCTAANAGATGTA]

[-] EMBL SMAA28908            [ATGATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGASCGTTATTATTATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCATTTTTTTTGTTCTTTTCATTCCATTTTGATTCTATCACTTTTTGTGTCTGGGCTAAACACATGAACTAATGTTACCGACAATAAACATATAAGACGGTTATTACTTATTATTCAACTCATATCTTTGACTATARCATGACTACATATTGAATGAGTCTTCAATGAATGCCATTCCATTAGTATTTACTAAGTTGTCGTAGTTGCCATGGTAACCAATGTATTGTAATTACCTTTTTAATACATAAATCTAANAGATGTA]
[-] EMBL CD180168             [             TTTCTCTGCATAAACATTATATACCATTAAAGATCATGATCGTTATTATTATGGCAAAGGAAAGAAAAAATCTGACAAAAATACCA TTTTTTTGTTCTTTTCATTCCATTTTGATTATATCACTTTTTGTTTCTGGGCTAAACACATGAAATAATGTTTCCGACAATAAACATATAAGACGGTTATTA                                                                                                                                                            ]
[+] EMBL SM501                [                                                                                                                                                                                                                ATTCAACTCATATCTTTGACTATATCATGACTACATATTGAATGAGTCTTCAATGAATGCCATTCCATTAGTATTT CTAAGTTGTCGTAGTTGCCATGGTA                                                ]


>consensus_9688#1 ATGATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGASCGTTATT ATTATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCATTTTTTTTGTTCTTTTCATTC CATTTTGATTCTATCACTTTTTGTGTCTGGGCTAAACACATGAACTAATGTTACCGACAA TAAACATATAAGACGGTTATTACTTATTATTCAACTCATATCTTTGACTATARCATGACT ACATATTGAATGAGTCTTCAATGAATGCCATTCCATTAGTATTTACTAAGTTGTCGTAGT TGCCATGGTAACCAATGTATTGTAATTACCTTTTTAATACATAAATCTAANAGATGTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9688#0      ATATTAAATTGCTAGCACAGTGATAATCCCTCTAGTTTTTTTTCTCGTTGATTTGATATA 60
consensus_9688#1      ------------------------------------------------------------
                                                                                  

consensus_9688#0      GAAAAAACATGAAGAAAATCTCATTTTCTCCGGAAGTATGGACAAAGATATTTATTGTAG 120
consensus_9688#1      ------------------------------------------------------------
                                                                                  

consensus_9688#0      TGAATAGTTTATTTATAGTATTCAGTTTTATTATGTTTGCACTAGGTATTAGTGCATTAG 180
consensus_9688#1      ------------------------------------------------------------
                                                                                  

consensus_9688#0      ATACATTACTTAAACATAATACAATTATACAAGTGGCACCACCAGCAATCTTTGGAACTG 240
consensus_9688#1      ------------------------------------------------------------
                                                                                  

consensus_9688#0      TTATATTTACAGGATTAGTTGGAATTATAGCATCAAGTGTTGGATTTCTTGGATTATGGA 300
consensus_9688#1      ------------------------------------------------------------
                                                                                  

consensus_9688#0      GAAAAATGAAAATGATTGCTTTTGTGCATATGATTGGTTTGGGTATAGCAACATTTTTAA 360
consensus_9688#1      ------------------------------------------------------------
                                                                                  

consensus_9688#0      ATATATGTATTGCTATTGCAGCAGTTGCCACACAAGATCAATATGCATCAGATGTACAAC 420
consensus_9688#1      ------------------------------------------------------------
                                                                                  

consensus_9688#0      AATCGTTGCTTAATTCTATATCAAATTATAATCAAACTTCATATTCAGTGGAATTCGATA 480
consensus_9688#1      ------------------------------------------------------------
                                                                                  

consensus_9688#0      AGTTACAGACTAGTTTCTATTGTTGTGGAGCTACCTCGTACAGAGATTATAGACAATATC 540
consensus_9688#1      ------------------------------------------------------------
                                                                                  

consensus_9688#0      AAATGAAGATACCACCGTCTTGTAGAGTTGGTGAATTGACCTATGCAACAGGTTGTATTG 600
consensus_9688#1      ------------------------------------------------------------
                                                                                  

consensus_9688#0      AAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTTTTCTCA 660
consensus_9688#1      ------------------------------------------------------------
                                                                                  

consensus_9688#0      CAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATGATTCGTAAATCTGATG 720
consensus_9688#1      ---------------------------------------------------------ATG 3
                                                                               ***

consensus_9688#0      ATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGATCGTTATTATT 780
consensus_9688#1      ATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGASCGTTATTATT 63
                      ************************************************* **********

consensus_9688#0      ATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCANTTNNTTTGGTTCTTTTCATTCCA 840
consensus_9688#1      ATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCATTTTTTTTG-TTCTTTTCATTCCA 122
                      ************************************ **  **** **************

consensus_9688#0      TTTTGGATTCTATCACTTTTGGGNTCTGGGCTAAACACATGAACTAATGTTACCCGACAA 900
consensus_9688#1      TTTTG-ATTCTATCACTTTTTGTGTCTGGGCTAAACACATGAACTAATGTTACC-GACAA 180
                      ***** ************** *  ****************************** *****

consensus_9688#0      TAACCATATAAGACGGNTATTACTTATTATTCAACTCATATCTTTGGACTATATCATGAC 960
consensus_9688#1      TAAACATATAAGACGGTTATTACTTATTATTCAACTCATATCTTTG-ACTATARCATGAC 239
                      *** ************ ***************************** ****** ******

consensus_9688#0      TACATATTGGATGAGTCTCCAATGAATGCCATCCCAT-AGTATTTCTTAGGTGGCGGNGG 1019
consensus_9688#1      TACATATTGAATGAGTCTTCAATGAATGCCATTCCATTAGTATTTACTAAGTTGTCGTAG 299
                      ********* ******** ************* **** *******  ** ** *  *  *

consensus_9688#0      TGGCA--GGTAACCA-TGTATTGTAATTACCTTTTTAATACATAAATCTAAAAGATGTAT 1076
consensus_9688#1      TTGCCATGGTAACCAATGTATTGTAATTACCTTTTTAATACATAAATCTAANAGATGTA- 358
                      * **   ******** *********************************** ******* 

consensus_9688#0      TATA 1080
consensus_9688#1      ----
                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)