These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9688#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1080 fasta sequence [ATATTAAATTGCTAGCACAGTGATAATCCCTCTAGTTTTTTTTCTCGTTGATTTGAT-ATAGAAAAAACATGAAGAAAATCTCATTTTCTCCGGAAGTATGGACAAAGATATTTATTGTAGTGAATAGTTTATTTATAGTATTCAGTTTTATTATGTTTGCACTAGGTATTAGTGCATTAGATACATTACTTAAACATAATACAATTATACAAGTGGCACCACCAGCAATCTTTGGAACTGTTATATTTACAGGATTAGTTGGAATTATAGCATCAAGTGTTGGATTTCTTGGATTATGGAGAAAAATGAAAATGATTGCTTTTGTGCATATGATTGGTTTGGGTATAGCAACATTTTTAAATATATGTATTGCTATTGCAGCAGTTGCCACACAAGATCAATATGCATCAGATGTACAACAATCGTTGCTTAATTCTATATCAAATTATAATCAAACTTCATATTCAGTGGAATTCGATAAGTTACAGACTAGTTTCTATTGTTGTGGAGCTACCTCGTACAGAG-ATTATAGACAATATCAAATGAAGATACCACCGTC-TTGTA-GAGTTGGTG-AATTGACCTATGCAACAGGTTGTATTGAAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTTTTCTCACAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATGATTCGTAAATCTGATGATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGATCGTTATTATTATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCANTTNNTTTGGTTCTTTTCATTCCATTTTGGATTCTATCACTTTTGGGNTCTGGGCTAAACACATGAACTAATGTTACCCGACAATAACCATATAAGACGGNTATTACTTATTATTCAACTCATATCTTTGGACTATATCATGACTACATATTGGATGAGTCTCCAATGAATGCCATCCCA-TAGTATTTCTTAGGTGGCGGNGGTGGCA-GGTAACC-ATGTATTGTAATTACCTTTTTAATACATAAATCTAAAAGATGTATTATA] [+] EMBL CD084135 [ATATTAAATTGCTAGCACAGTGATAATCCCTCTAGTTTTTTTTCTCGTTGATTAGAT ATAGAAAAAACATGAAGAAAATCTCATTTTCTCCGGAAGTATGGACAAAGATATTTATTGTAGTGAATAGTTTATTTATAGTATTCAGTTTTATTATGTTTGCACTAGGTATTAGTGCATTAGATACATTACTTAAACATAATACAATTATACAAGTGGCACCACCAGCAATCTTTGGAACTGTTATATTTACAGGATTAGTTGGAATTATAGCATCAAGTGTTGGATTTCTTGGATTATGGAGAAAAATGAAAATGATTGCTTTTGTGCATATGATTGGTTTGGGTATAGCAACATTTTTAAAT ] [-] EMBL CD196267 [ TGATAATAGAAAAAACATGAAGAAAATCTCATTTTCTCCGGAAGTATGGACAAAGATATTTATTGTAGTGAATAGTTTATTCATAGTATTCAGTTTTATTATGTTTGCACTAGGTATTAGTGCATTAGATACATTACTTAAACATAATACAATTATACAAGTGGCACCACCAGCAATCTTTGGAACTGTTATATTTACAGGATTAGTTGGAATTATAGCATCAAGTGTTGGATTTCTTGGATTATGGAGAAAAATGAAAATGATTGCTTTTGTGCATATGATTGGTTTGGGTATAGCAACATTTTTAAATATATGTATTGCTATTGCAG ] [-] EMBL CD196343 [ TGATAATAGAAAAAACATGAAGAAAATCTCA TTTCTCCGGAAGTATGGACAAAGATATTTATTGTAGTGAATAGTTTATTTATAGTATTCAGTTTTATTATGTTTGCACTAGGTATTAGTGCATTAGATACATTACTTAAACATAATACAATTATACAAGTGGCACCACCAGCAATCTTTGGAACTGTTATATTTACAGGATTAGTTGGAATTATAGCATCAAGTGTTGGATTTCTTGGATTATGGAGAAAAATGAAAATGATTGCTTTTGTGCATATGATTGGTTTGGGTATAGCAACATTTTTAAATATATGTATTGCTATTGCAG ] [+] EMBL AW466250 [ AAAATGAAAATGATTGCTTTTGTGCATATGATTGGTTTGGGTATAGCAACATTTTTAAATATATGTATTGCTATTGCAGCAGTTGCCACACAAGATCAATATGCATCAGATGTACAACAATCGTTGCTTAATTCTATATCAAATTATAATCAAACTTCATATTCAGTGGAATTCGATAAGTTACAGACTAGTTTCTATTGTTGTGGAGCTACCTCGTACAGAG ATTATAGACAATATCAAATGAAGATACCACCGTC TTGTA NAGTTGGTG AATTGACCTATGCAACAGGTTGTATTGAAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTTTTCTCACAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATGATTCGTAAATCTGATGATGGAGTTGCTTTCTCTGCATAAACATTATATAC ] [+] EMBL CD171169 [ ATAAGTTACAGACTAGTTTCTATTGTTGTGGAGCTACCTCGTACAGAG ATTATAGACAATATCAAATGAAGATACCACCGTC TTGTA GAGTTGGTG AATTGACCTATGCAACAGGTTGTATTGAAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTTTTCTCACAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATG ] [+] EMBL CD171181 [ ATAAGTTACAGACTAGTTTCTATTGTTGTGGAGCTACCTCGTACAGAG ATTATAGACAATATCAAATGAAGATACCACCGTC TTGTA GAGTTGGTG AATTGACCTATGCAACAGGTTGTATTGAAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTTTTCTCACAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATG ] [+] EMBL SM929 [ AGNTACCTCGTACAGAGNATTATAGACAATATCAAATGAAGATACCACCGNCNTNGTAGGAGTTGGTGNAATTGACCTATGCAACAGGTTGTNTTGAAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTNTNCTCACAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATGATTCGCAAATCTGATGATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGATCGTTATTATTATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCANTTNNTTTGGTTCTTTTCATTCCATTTTGGATTCTATCACTTTTGGGNTCTGGGCTAAACACATGAACTAATGTTACCCGACAATAACCATATAAGACGGNTATTACTTATTATTCAACTCATATCTTTGGACTATATCATGACTACATATTGGATGAGTCTCCAATGAATGCCATCCCA TAGTATTTCTTAGGTGGCGGNGGTGGCA GGTAACC ATGT ] [+] EMBL AI977163 [ AACAGGTTGTATTGAAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTTTTCTCACAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATGATTCGTAAATCTGATGATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGATCGTTATTATTATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCA TTTTTTTTGTTCTTTTCATTCCATTTT GATTCTATCACTTTTTGTTTCTGGGCTAAACACATGAACTAATGTTA CCGACAATAAACATATAAGACGGTTATTACTTATTATTCAACTCATATCTTT GACTATATCATGACTACATATTGAATGAGTCTTCAATGAATGCCATTCCATTAGTATTTCTAAGTTGTCGTAGTTGCCATGGTAACCAATGTATTGTAATTACCTTTTTAATACATAAATCTAAAAGATGTATTATA] consensusID : consensus_9688#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 358 fasta sequence [ATGATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGASCGTTATTATTATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCATTTTTTTTGTTCTTTTCATTCCATTTTGATTCTATCACTTTTTGTGTCTGGGCTAAACACATGAACTAATGTTACCGACAATAAACATATAAGACGGTTATTACTTATTATTCAACTCATATCTTTGACTATARCATGACTACATATTGAATGAGTCTTCAATGAATGCCATTCCATTAGTATTTACTAAGTTGTCGTAGTTGCCATGGTAACCAATGTATTGTAATTACCTTTTTAATACATAAATCTAANAGATGTA] [-] EMBL SMAA28908 [ATGATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGASCGTTATTATTATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCATTTTTTTTGTTCTTTTCATTCCATTTTGATTCTATCACTTTTTGTGTCTGGGCTAAACACATGAACTAATGTTACCGACAATAAACATATAAGACGGTTATTACTTATTATTCAACTCATATCTTTGACTATARCATGACTACATATTGAATGAGTCTTCAATGAATGCCATTCCATTAGTATTTACTAAGTTGTCGTAGTTGCCATGGTAACCAATGTATTGTAATTACCTTTTTAATACATAAATCTAANAGATGTA] [-] EMBL CD180168 [ TTTCTCTGCATAAACATTATATACCATTAAAGATCATGATCGTTATTATTATGGCAAAGGAAAGAAAAAATCTGACAAAAATACCA TTTTTTTGTTCTTTTCATTCCATTTTGATTATATCACTTTTTGTTTCTGGGCTAAACACATGAAATAATGTTTCCGACAATAAACATATAAGACGGTTATTA ] [+] EMBL SM501 [ ATTCAACTCATATCTTTGACTATATCATGACTACATATTGAATGAGTCTTCAATGAATGCCATTCCATTAGTATTT CTAAGTTGTCGTAGTTGCCATGGTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9688#0 ATATTAAATTGCTAGCACAGTGATAATCCCTCTAGTTTTTTTTCTCGTTGATTTGATATA 60 consensus_9688#1 ------------------------------------------------------------ consensus_9688#0 GAAAAAACATGAAGAAAATCTCATTTTCTCCGGAAGTATGGACAAAGATATTTATTGTAG 120 consensus_9688#1 ------------------------------------------------------------ consensus_9688#0 TGAATAGTTTATTTATAGTATTCAGTTTTATTATGTTTGCACTAGGTATTAGTGCATTAG 180 consensus_9688#1 ------------------------------------------------------------ consensus_9688#0 ATACATTACTTAAACATAATACAATTATACAAGTGGCACCACCAGCAATCTTTGGAACTG 240 consensus_9688#1 ------------------------------------------------------------ consensus_9688#0 TTATATTTACAGGATTAGTTGGAATTATAGCATCAAGTGTTGGATTTCTTGGATTATGGA 300 consensus_9688#1 ------------------------------------------------------------ consensus_9688#0 GAAAAATGAAAATGATTGCTTTTGTGCATATGATTGGTTTGGGTATAGCAACATTTTTAA 360 consensus_9688#1 ------------------------------------------------------------ consensus_9688#0 ATATATGTATTGCTATTGCAGCAGTTGCCACACAAGATCAATATGCATCAGATGTACAAC 420 consensus_9688#1 ------------------------------------------------------------ consensus_9688#0 AATCGTTGCTTAATTCTATATCAAATTATAATCAAACTTCATATTCAGTGGAATTCGATA 480 consensus_9688#1 ------------------------------------------------------------ consensus_9688#0 AGTTACAGACTAGTTTCTATTGTTGTGGAGCTACCTCGTACAGAGATTATAGACAATATC 540 consensus_9688#1 ------------------------------------------------------------ consensus_9688#0 AAATGAAGATACCACCGTCTTGTAGAGTTGGTGAATTGACCTATGCAACAGGTTGTATTG 600 consensus_9688#1 ------------------------------------------------------------ consensus_9688#0 AAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTTTTCTCA 660 consensus_9688#1 ------------------------------------------------------------ consensus_9688#0 CAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATGATTCGTAAATCTGATG 720 consensus_9688#1 ---------------------------------------------------------ATG 3 *** consensus_9688#0 ATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGATCGTTATTATT 780 consensus_9688#1 ATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGASCGTTATTATT 63 ************************************************* ********** consensus_9688#0 ATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCANTTNNTTTGGTTCTTTTCATTCCA 840 consensus_9688#1 ATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCATTTTTTTTG-TTCTTTTCATTCCA 122 ************************************ ** **** ************** consensus_9688#0 TTTTGGATTCTATCACTTTTGGGNTCTGGGCTAAACACATGAACTAATGTTACCCGACAA 900 consensus_9688#1 TTTTG-ATTCTATCACTTTTTGTGTCTGGGCTAAACACATGAACTAATGTTACC-GACAA 180 ***** ************** * ****************************** ***** consensus_9688#0 TAACCATATAAGACGGNTATTACTTATTATTCAACTCATATCTTTGGACTATATCATGAC 960 consensus_9688#1 TAAACATATAAGACGGTTATTACTTATTATTCAACTCATATCTTTG-ACTATARCATGAC 239 *** ************ ***************************** ****** ****** consensus_9688#0 TACATATTGGATGAGTCTCCAATGAATGCCATCCCAT-AGTATTTCTTAGGTGGCGGNGG 1019 consensus_9688#1 TACATATTGAATGAGTCTTCAATGAATGCCATTCCATTAGTATTTACTAAGTTGTCGTAG 299 ********* ******** ************* **** ******* ** ** * * * consensus_9688#0 TGGCA--GGTAACCA-TGTATTGTAATTACCTTTTTAATACATAAATCTAAAAGATGTAT 1076 consensus_9688#1 TTGCCATGGTAACCAATGTATTGTAATTACCTTTTTAATACATAAATCTAANAGATGTA- 358 * ** ******** *********************************** ******* consensus_9688#0 TATA 1080 consensus_9688#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||