These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9689#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1657 fasta sequence [GGTTACCAAGCAAATTTAGATTGCCGTACAAGAGATAATCAAACACCCTTACATGTCACTGTCCGTACAAATTATCTGCCTATTGTTGAACTGTTATTGAATGCTGGTTCCGATCCTAATATAATGACAAAAGATAATTATACACCATTACATGTAGCTATTAAAGAAGACTCAGATGATATTGTTAGAATATTAATTGAGCACGATGCTAATCCGGAGGTTAAAACGAAGAAAGGATTTACACCCTTACACTTAGCAGCAAAATATGGTTCATGCAAAACAGCCCACTTGTTAATGGAAAGAACAAAGTCTGATCCAAACGCAACTGGTCCCAATGGCTTCACGCCTGTACACGTGGCCACATTCTACAATAATAACAAAATGCTGGATAAGTTGATAGAATTTGGAGGTGATGTCAATCGACCTGTCAAGAATGGCTTTACGCCACTTCATTTAGCAACTAAACGAAATCATCTGGATTCAATCCACTTATTAATATCCAAAGGAGCCATAACTGATAAAGGTTCAAGGAACGGTTATACACCACTTCATTTAGCCTCACAAGATGGTCAAATCGAAATAGTTAAAGTTCTCGCTGAAAAATACAAAGCTCAAGTGGATGCTGCAGCCAAAGACGGTTTAACACCACTACACTTGGCGGTACAAGAAGACAAAGTTAGTGTAGCTGAATATTTATTAAGTTCAGGTGCGTCCATTAATACGAAAACATTGAAAGCTGGATTTACACCGCTACATTCATCTGCTTATAGGGGACAGCTCGCCTCTGTTCGTTTACTTCTATCATGTGTCCCTGAACATGAACTTCAGCAAGTTATAAACAGTCGCACTCATATGGGTTCAACTCCACTGCATTTGGCAGCACAACAAGGTCATCTACAAGTAGCTCTAAAACTGATTCAAATGGGAGCTGATCCAAACATTTGTAATAAGCAAGGATGGACAGCAGCAAAATTAGCTCATAAGCAACATTACTTGAACTTGTTCGAATTGTTGCAATCGATTACAACTAATGGCGGTGATGGGAGTTTACCTAGTTCAAATGGAATAGATGATAATGTAAATCTAATCAATGGTGTAATGCCCTTAGAAAAAGCGGAATATATGACCGATCATATGATTTCAGATAGTGAAGATGAAGCCGAACTTTTATCTACACCAGCAATGTTTCGATATCCCAAACAATGTAAAGGAAATTTTGATGAAACAGGAGACAACGATATGACATCAATTCCAAGTACACCAACTATGGGTAATAAACTCATATCAGTCCGCCCAACAACACTGCATATTCCTGAATATCATTTAACTGCCTTAGGGGGTGAAACTCTTTGCTCCAGTCTTCATGAAAGTATGACCGAGGAACGCGTGAAGCTGATGCTCAATGGAAAAGAGGATCCAGTTACAACTTCACAACAGCCAGTTCAGATGGCTATTACTGCACCGTCACCTGCTGCTCTATCAGAATGGGATTTTGATGTAGATAATGTTCATTCGACGGAGAATTTAGTTGAGTCGGGGTTTCTTATCTCTTTTATCATCGATGCTCGAGGTGGTCTAGTTGAAGCTCAAAGACGACCTGGTTTACGATTTATTGTACCGCCTAATGCACCTTCTGGACCACTACGTATAATTTGCC] [+] EMBL CD149574 [GGTTACCAAGCAAATTTAGATTGCCGTACAAGAGATAATCAAACACCCTTACATGTCACTGTCCGTACAAATTATCTGCCTATTGTTGAACTGTTATTGAATGCTGGTTCCGATCCTAATATAATGACAAAAGATAATTATACACCATTACATGTAGCTATTAAAGAAGACTCAGATGATATTGTTAGAATATTAATTGAGCACGATGCTAATCCGGAGGTTAAAACGAAGAAAGGATTTACACCCTTACACTTAGCAGCAAAATATGGTTCATGCAAAACAGCCCACTTGTTAATGGAAAGAACAAAGTCTGATCCAAACGCAACTGGTCCCAATGGCTTCACGCCTGTACACGTGGCCACATTCTACAATAATAACAAAATGCTGGATAAGTTGATAGAATTTGGAGGTGATGTCAATCGACCTGTCAAGAATGGC ] [+] EMBL CD067112 [ AACGAATAAAGGATTTACACCCTCACACTTAGCAGCAAAATATGGTTCATGCAAAACAGCCCACTTGTTAATGGAAAGAACAAAGTCTGATCCAAACGCAACTGGTCCCAATGGCTTCACGCCTGTACACGTGGCCACATTCTACAATAATAACAAAATGCTGGATAAGACGATAGAATTTGGAGGTGATGTCAATCCACCTGTCAAGAATGGCTTTACGCCACTTCATTTAGCAACTAAACGAAATCATCTGGATTCAATCCACTTATTAATATCCAAAGGAGCCATAACTGATAAAGGTTCAAGGAACGGTTATACACCACTTCATTTAGCCTCACAAGATGGTCAAATCGAAATAGTTAAAGTTCTCGCTGAAAAATACAAAGCTCAAGTGGA ] [+] EMBL CD168631 [ TAGCAGCAAAATATGGTTCATGCAAAACAGCCCACTTGTTAATGGAAAGAACAAAGTCTGATCCAAACGCAACTGGTCCCAATGGCTTCACGCCTGTACACGTGGCCACATTCTACAATAATAACAAAATGCTGGATAAGTTGATAGAATTTGGAGGTGATGTCAATCGACCTGTCAAGAATGGCTTTACGCCACTTCATTTAGCAACTAAACGAAATCATCTGGATTCAATCCACTTATTAATATCCAAAGGAGCCATAACTGATAAAGGTTCAAGGAACGGTTATACACCACTTCATTTAGCCTCACAAGATGGTCAAATCGAAATAGTTAAAGTTCTCGCTGAAAAATACAAAGCTCAAGTGGATGCTGCAGCCAAAGACGGTTTAACAC ] [-] EMBL CD149450 [ GAATTTGGAGGTGATGTCAATCGACCTGTCAAGAATGGCTTTACGCCACTTCATTTAGCAACTAAACGAAATCATCTGGATTCAATCCACTTATTAATACCCAAAGGAGCCATAACTGATAAAGGTTCAAGGAACGGTTATACACCACTTCATTTAGCCTCACAAGATGGTCAAATCGAAATAGTTAAAGTTCTCGCTGAAAAATACAAAGCTCAAGTGGATGCTGCAGCCAAAGACGGTTTAACACCACTACACTTGGCGGTACAAGAAGACAAAGTTAGTGTAGCTGAATATTTATTAAGTTCAGGTGCGTCCATTAATACGAAAACATTGAAAGCTGGATTTACACCGCTACATTCACCTGCTT ] [-] EMBL CD131054 [ TGCAGCCAAAGACGGTTTAACACCACTACATTTGGCGGTACAAGAAGACAAAGTTAGTGTAGCTGAATATTTATTAAGTTCAGGTGCGTCCATTAATACGAAAACATTGAAAGCTGGATTTACACCGCTACATTCATCTGCTTATAGGGGACAGCTCGCCTCTGTTCGTTTACTTCTATCATGTGTCCCTGAACATGAACTTCAGCAAGTTATAAACAGTCGCACTCATATGGGTTCAACTCCACTGCATTTGGCAGCACAACAAGGTCATCTACAAGTAGCTCTAAAACTGATTCAAATGGGAGCTGATCCAAACATTTGTAATAAGCAAGGATGGACAGCAGCAAAATTAGCTCATAAGCAACATTACTTGAACTTGTTCGAATTGTTGCAATCGATTA ] [+] EMBL CD191109 [ CGGGACAAGAAGACAAAGTTAGTGTAGCTGAATATTTATTAAGTTCAGGTGCGTCCATTAATACGAAAACATTGAAAGCTGGATTTACACGGGTACATTCATCTGCTTATAGGGGACAGCTCGCCTCTGTTCGTTTACTTCTATCA ] [+] EMBL CD191098 [ CTGCTTATAGGGGACAGCTCGCCTCTGTTCGTTTACTTCTATCATGTGTCCCTGAACATGAACTTCAGCAAGTTATAAACAGTCGCACTCATATGGGTTCAACTCCACTGCATTTGGCAGCACAACAAGGTCATCTACAAGTAGCTCTAAAACTGATTCAAATGGGAGCTGATCCAAACATTTGTAATAAGCAAGGATGGACAGCAGCAAAATTAGCCCATAAGCAACATTACTTGAACTTGTTCGAATTGTTGCAATCGATT ] [-] EMBL CD067210 [ CATAAGCAACATTACTTGAACTTGTTCGAATTGTTGCAATCGATTACAACTAATGGCGGTGATGGGAGTTTACCTAGTTCAAATGGAATAGATGATAATGTAAATCTAATCAATGGTGTAATGCCCTTAGAAAAAGCGGAATATATGACCGATCATATGATTTCAGATAGTGAAGATGAAGCCGAACTTTTATCTACACCAGCAATGTTTCGATATCCCAAACAATGTAAAGGAAATTTTGATGAAACAGGAGACAACGATATGACATCAATTCCAAGTACACCAACTATGGGTAATAAACTCATATCAGTCCGCCCAACAAC ] [+] EMBL CD185899 [ CGAACTTTTATCTACACCAGCAATGTTTCGATATCCCAAACAATGTAAAGGAAATTTTGATGAAACAGGAGACAACGATATGACATCAATTCCAAGTACACCAACTATGGATAATAAACTCATATCAGTCCGCCCAACAACACTGCATATTCCTGAATATCATTTAACTGCCTTAGGGGGTGAAACTCTTTGCTCCAGTCTTCATGAAAGTATGACCGAGGAACGCGTGAAGCTGATGCTCAATGGAAAAGAGGATCCAGTTACAACTTCACAACAGCCAGTTCAGATGGCTATTACTGCACCGTCACCTGCTGCTCTATCAGAATGGGATTTTGATGTAGATAATGTTCATTCGACGGAGAATTTAGTTGAGTCGGGGTTTCTTATCTCTTTTATCATCGATGCTCGAGGTGGTCTAGTTGAAGCTCAAAGACGACCTGGTTTACGATTTATTGTACCGCCTAATGCACCTTCTGGACCACTACGTATAATTTGCC] [+] EMBL CD185740 [ CAGTTACAACTTCACAACAGCCAGTTCAGATGGCTATTACTGCACCGTCACCTGCTGCTCTATCAGAATGGGATTTTGATGTAAATAATGTTCATTCGACGAAAAATTTAGTTAAGTCGGGGTTTCTTATCTCTTTTATCATCGATGCTCGAGGTGGTCTAGTTGAAGCTCAAAGACGACCTGGTTTACGATTTATTGTACCGCCTAATGCACCTTCTGGACCACTACGTATAATTTGCC] consensusID : consensus_9689#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 130 fasta sequence [CAACCAATGTAAAGGAAATTTTGATGAAACAGGAGCCACCGATATGACATCAATTCCAAGTACACCAGCTATGGATAATAAACTCAAATCAGTCCGCGCAACAACATTGCATATTCTTAATTCCCCCCTG] [-] EMBL CD066604 [CAACCAATGTAAAGGAAATTTTGATGAAACAGGAGCCACCGATATGACATCAATTCCAAGTACACCAGCTATGGATAATAAACTCAAATCAGTCCGCGCAACAACATTGCATATTCTTAATTCCCCCCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9689#0 GGTTACCAAGCAAATTTAGATTGCCGTACAAGAGATAATCAAACACCCTTACATGTCACT 60 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 GTCCGTACAAATTATCTGCCTATTGTTGAACTGTTATTGAATGCTGGTTCCGATCCTAAT 120 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 ATAATGACAAAAGATAATTATACACCATTACATGTAGCTATTAAAGAAGACTCAGATGAT 180 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 ATTGTTAGAATATTAATTGAGCACGATGCTAATCCGGAGGTTAAAACGAAGAAAGGATTT 240 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 ACACCCTTACACTTAGCAGCAAAATATGGTTCATGCAAAACAGCCCACTTGTTAATGGAA 300 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 AGAACAAAGTCTGATCCAAACGCAACTGGTCCCAATGGCTTCACGCCTGTACACGTGGCC 360 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 ACATTCTACAATAATAACAAAATGCTGGATAAGTTGATAGAATTTGGAGGTGATGTCAAT 420 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 CGACCTGTCAAGAATGGCTTTACGCCACTTCATTTAGCAACTAAACGAAATCATCTGGAT 480 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 TCAATCCACTTATTAATATCCAAAGGAGCCATAACTGATAAAGGTTCAAGGAACGGTTAT 540 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 ACACCACTTCATTTAGCCTCACAAGATGGTCAAATCGAAATAGTTAAAGTTCTCGCTGAA 600 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 AAATACAAAGCTCAAGTGGATGCTGCAGCCAAAGACGGTTTAACACCACTACACTTGGCG 660 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 GTACAAGAAGACAAAGTTAGTGTAGCTGAATATTTATTAAGTTCAGGTGCGTCCATTAAT 720 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 ACGAAAACATTGAAAGCTGGATTTACACCGCTACATTCATCTGCTTATAGGGGACAGCTC 780 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 GCCTCTGTTCGTTTACTTCTATCATGTGTCCCTGAACATGAACTTCAGCAAGTTATAAAC 840 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 AGTCGCACTCATATGGGTTCAACTCCACTGCATTTGGCAGCACAACAAGGTCATCTACAA 900 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 GTAGCTCTAAAACTGATTCAAATGGGAGCTGATCCAAACATTTGTAATAAGCAAGGATGG 960 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 ACAGCAGCAAAATTAGCTCATAAGCAACATTACTTGAACTTGTTCGAATTGTTGCAATCG 1020 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 ATTACAACTAATGGCGGTGATGGGAGTTTACCTAGTTCAAATGGAATAGATGATAATGTA 1080 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 AATCTAATCAATGGTGTAATGCCCTTAGAAAAAGCGGAATATATGACCGATCATATGATT 1140 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 TCAGATAGTGAAGATGAAGCCGAACTTTTATCTACACCAGCAATGTTTCGATATCCCAAA 1200 consensus_9689#1 --------------------------------------------------------CAAC 4 *** consensus_9689#0 CAATGTAAAGGAAATTTTGATGAAACAGGAGACAACGATATGACATCAATTCCAAGTACA 1260 consensus_9689#1 CAATGTAAAGGAAATTTTGATGAAACAGGAGCCACCGATATGACATCAATTCCAAGTACA 64 ******************************* ** ************************* consensus_9689#0 CCAACTATGGGTAATAAACTCATATCAGTCCGCCCAACAACACTGCATATTCCTGAATAT 1320 consensus_9689#1 CCAGCTATGGATAATAAACTCAAATCAGTCCGCGCAACAACATTGCATATTCTTAATTCC 124 *** ****** *********** ********** ******** ********* * * * consensus_9689#0 CATTTAACTGCCTTAGGGGGTGAAACTCTTTGCTCCAGTCTTCATGAAAGTATGACCGAG 1380 consensus_9689#1 CCCCTG------------------------------------------------------ 130 * * consensus_9689#0 GAACGCGTGAAGCTGATGCTCAATGGAAAAGAGGATCCAGTTACAACTTCACAACAGCCA 1440 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 GTTCAGATGGCTATTACTGCACCGTCACCTGCTGCTCTATCAGAATGGGATTTTGATGTA 1500 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 GATAATGTTCATTCGACGGAGAATTTAGTTGAGTCGGGGTTTCTTATCTCTTTTATCATC 1560 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 GATGCTCGAGGTGGTCTAGTTGAAGCTCAAAGACGACCTGGTTTACGATTTATTGTACCG 1620 consensus_9689#1 ------------------------------------------------------------ consensus_9689#0 CCTAATGCACCTTCTGGACCACTACGTATAATTTGCC 1657 consensus_9689#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||