These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9690#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 629 fasta sequence [AACTGACGTAACAAGTATGGAATGCATTCTGGAATCTGGAATGCTCAGGATTGGCAACGTTCACTAGATTGGAGATTCGTGATGACGGTATGACGCAAATATATGGAGAAGACCAACACGGATGTATGGACGATCTTATTCCAGTCAATTCTAATTCTGAATTTCACGTTTCCCATCACAAGAAATCAATCTCTGTTAGGTGGTCTGTTCAGCTAGACGTTGGTGCTGCACGGTCGAATTGTAAGTTTCCATTTTCCAATGTGACAGTCTGATTCCAGTTAGAACTCAGTTGTCAGTTCAACCTGCACATCAAATCCTGTTTTTCTATTGAATCATAAATACACCTCTGCTTTTCAGATCAAGTCGCTGTTACAACGAACGACCAGGTTACTATTGTGAGAGCATGTGAATTTGAATTGAGGAAGTGAAATCAATACTTCAGATTGATGAACATTTCTTCATTCAATCTCATTCAATGCTCAACGGAAGGAACACATGCTCAAACAATCACATCCATAATCGCACTCAACAATTATAGATAGATTTATTGAGGTAACTGATACGTTTCCTACTGCAGTCAGGAAGATTTTTGTGGGACAAATGTATCAAATGAATCAATTTCTGCTCAA] [+] EMBL CD067901 [AACTGACGTAACAAGTATGGAATGCATTCTGGAATCTGGAATGCTCAGGATTGGCAACGTTCACTAGATTGGAGATTCGTGATGACGGTATGACGCAAATATATGGAGAAGACCAACACGGATGTATGGACGATCTTATTCCAGTCAATTCTAATTCTGAATTTCACGTTTCCCATCACAAGAAATCAATCTCTGTTAGGTGGTCTGTTCAGCTAGACGTTGGTGCTGCACGGTCGAATTGTAAGTTTCCATTTTCCAATGTGACAGTCTGATTCCAGTTAGAACTCAGTTGTCAGTTCAACCTGCACATCAAATCCTGTTTTTCTATTGAATCATAAATACACCTCTGCTTTTCAGATCAAGTCGCTGTTACAACGAACGACCAGGTTACTATTGTGAGAGCATGTGAATTTGAATTGAGGAAGTGAAATCAATACTTCAGATTGATGAACATTTCTTCATTCAATCTCATTCAATGCTCAACGGAAGGAACACATGCTCAAACAATCACATCCATAATCGCACTCAACAATTATAGATAGATTTATTGAGGTAACTGATACGTTTCCTACTGCAGTCAGGAAGATTTTTGTGGGACAAATGTATCAAATGAATCAATTTCTGCTCAA] [-] EMBL CD163809 [ cgactGACGATCTTATTCCAGTCAATTCTAATTCTGAATTTCACGTTTCCCATCACAAGAAATCAATCTCTGTTAGGTGGTCTGTTCAGCTAGACGTTGGTGCTGCACGGTCGAATTGTAAGTTTCCATTTTCCAATGTGACAGTCTGATTCCAGTTAGAACTCAGTTGTCAGTTCAACCTGCACATCAAATCCTGTTTTTCTATTGAATCATAAATACACTTCTGCTTTTCAGATCAAGTCGCTGTTACAACGAACGACCAGGTTACTATTGTGAGAGCATGTGAATTTGAATTGAGGAAGTGAAATCAATACTTCAGATTGATGAACATTTCTTCATTCAATCCCATTCAATGCTCAACGGAAGGAACACATGCTCAAACAATCACATCTATAATCGCTCTCAACAATTATAGATAGATTTATTGAGGTAACTGATACGTTT ] consensusID : consensus_9690#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 547 fasta sequence [GCACTTCAGTATGATGAAGATTTCTTCATTCAATCTCGTTCACTTCTTAACGGTGTATTGAAGGAACATATGCTTGAAGAATCATATCCGTAATCGCACTCAACAATTATAGATATATTTAACGAGGTAACTGTTACGTTTCCTACTGCAATCAGGAAGTGTTTTGTAGGATAAATGTTTCAAATGATCAAATGTCTGATAATGACGATGCTTATATTTGAGATTCATTAGTTGCTAATGAAGTCGTTAGTGAATTTGAGAAAAATATTTCATATGAATGAA-ATAGTGGTGAAATACGTGATGTTGCTCGTTTCCACAATGCTTATGATTGCAGAGCAAGCCTTGGTCAATATGAAGCACAAGTTCTCAATCTGTTCAAATCTAACGATAGTTCTGATGGTTCCAATTCAAACTTTATTTATACTCACAATCCATCTACTGCTAATCAATGTGAGAAACACGTTTCAAA-CGAGTCGCATCCTGATCACATTTCACATGTTATTGTAGCAGATGTTTGGTGCTTGTCATGCA-TATATATGTCACATAG] [+] EMBL CD192518 [GCACTTCAGTATGATGAAGATTTCTTCATTCAATCTCGTTCACTTCTTAACGGTGTATTGAAGGAACATATGCTTGAAGAATCATATCCGTAATCGCACTCAACAATTATAGATATATTTAACGAGGTAACTGTTACGTTTCCTACTGCAATCAGGAAGTGTTTTGTAGGATAAATGTTTCAAATGATCAAATGTCTGATAATGACGATGCTTATATTTGAGATTCATTAGTTGCTAATGAAGTCGTTAGTGAATTTGAGAAAAATATTTCATATGAATGAA ATAGTGG ] [-] EMBL CD166627 [ ATATATTTAACGAGGTAACTGTTACGTTTCCTACTGCAATCAGGAAGTGTTTTGTAGGATAAATGTTTCAAATGATCAAATGTCTGATAATGACGATGCTTATATTTGAGATTCATTAGTTGCTAATGAAGTCGTTAGTGAATTTGAGAAAAATATTTCATATGAATGAA ATAGTGGTGAAATACGTGATGTTGCACGTTTCCACAATGCTTATGATTGCAGAGCAAGCCTTGGTCAATATGAAGCACAAGTTCTCAATCTGTTCAAATCTAACGATAGTTCTGATGGTTCCAATTCAAACTTTATTTATACTCACAATCCATCTACTGCTAATCAATGTGAGAAACATGTTTCAAAGCGAGTCGCATCCTGATCACATTTCACATGTTATTGTAGCAGATGTTTGGTGCTTGTCATGCA TATATATGTCACATAG] [+] EMBL CD166790 [ aacTATATTTAACGAGGTAACTGTTACGTTTCCTACTGCAATCAGGAAGTGTCTCGTAGGATAAATGTTTCAAATGATCAAATGTCTGATAATGACGATGCTTATATTTGAGATTCATTAGTTGCTAATGAAGTCGTTAGTGAATTTGAGAAAAATATTTCATATGAATGAACATAGTGGTGAAATACGTGATGTTGCTCGTTTCCACAATGCTTATGATTGCAGAGCAAGCCTTGGTCAATATGAAGCACAAGTTCTCAATCTGTTCAAATCTAACGATAGTTCTGATGGTTCCAATTCAAACTTTATTTATACTCACAATCCATCTACTGCTAATCAATGTGAGAAACACGTTTCAAA CGAGTCGCATCCTGATCACATTTCACATGTTATTGTAGCAGATGTTTGGTGC TGTCATGCATTATATAT ] [+] EMBL CD064329 [ ttgcgATACGTGATGTTGCTCGTTTCCACAATGCTTATGATTGCAGAGCAAGCCTTGGTCAATATGAAGCACAAGTTCTCAATCTGTTCAAATCTAACGATAGTTCTGATGGTTCCAATTCAAACTTTATTTATACTCACAATCCATCTACTGCTAATCAATGTGAGAAACACGTTTCACA CGAGTCGCATCCTGATCACATTTCA ] consensusID : consensus_9690#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [CATGGCTCCCGNGCCGCCATGGTCGGCCGCGGGAAATTCGATTTTGAGGCACACACGAGACAACGGAAGGAACACATGCTCAAACAATCACATCCATAATCGCACTCAACAATTATAGATAGATTTATTGAGGTAACTGATACGTTTCCTACTGCAGTCAGGAAGATTTTTGTGGGACAAATGTATCAAATGAATCAATTTCTGCTCGACTTTGTGATGATGATGTTGATGATATTTGAGATTCATTAGTTGCTAATGAAGTCCTTAGTGAATTGAAGAAAGATATTTCATGTGAAGTAAATTGTGGTGAAATACGTGATGTTGCTCGTTTTCACAATGCTTATGATTGCAGAACAAACCTTGGTCAATATGAAGCACAAGTTCTCAATCTGTTCAAATCTAACGATAGTTCTGAAGGTTCCCAATTCACACTTTATTTATACTCACAATCCATCTACTGCTAATCAATG] [+] EMBL CD164519 [CATGGCTCCCGNGCCGCCATGGTCGGCCGCGGGAAATTCGATTTTGAGGCACACACGAGACAACGGAAGGAACACATGCTCAAACAATCACATCCATAATCGCACTCAACAATTATAGATAGATTTATTGAGGTAACTGATACGTTTCCTACTGCAGTCAGGAAGATTTTTGTGGGACAAATGTATCAAATGAATCAATTTCTGCTCGACTTTGTGATGATGATGTTGATGATATTTGAGATTCATTAGTTGCTAATGAAGTCCTTAGTGAATTGAAGAAAGATATTTCATGTGAAGTAAATTGTGGTGAAATACGTGATGTTGCTCGTTTTCACAATGCTTATGATTGCAGAACAAACCTTGGTCAATATGAAGCACAAGTTCTCAATCTGTTCAAATCTAACGATAGTTCTGAAGGTTCCCAATTCACACTTTATTTATACTCACAATCCATCTACTGCTAATCAATG] consensusID : consensus_9690#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 462 fasta sequence [CGACCTCGGTACCCGATGCTTATATTTGAGAATCATTAGTTGCTAATGAAGTCGTTAGTGAATTTGAGAAAAATATTTCATATGAATGAAATAGTGGTGAAATACGTGATGTTGCTCGTTTCCAAAATGCTTATGATTGCAGAGCAAGCCTTGGTCAATATGAAGCACAAGTTCTCAATCCGTTCAAATCTAACGATAGTTCTGATGGTTCCAATTCAAACTTTATTTATACTCACAATCCATCTACTGCTAATCAATGTGAGAAACATGTTTCAGACGAGTCGCATCCTGATCACATTTCACATGTTATTGTAGCAGATGTTTGGTGCTGTCATGCATTATATATGTCACATAGATACTCCTCTGAATGCTCGAATGAATGAACTGACGTAACAAGTATGGAATGCATTCTGGAATCTGGAATGTTCAGGATTGACAACGTTCACATAGTGGGAAAATTCA] [+] EMBL CD168226 [CGACCTCGGTACCCGATGCTTATATTTGAGAATCATTAGTTGCTAATGAAGTCGTTAGTGAATTTGAGAAAAATATTTCATATGAATGAAATAGTGGTGAAATACGTGATGTTGCTCGTTTCCAAAATGCTTATGATTGCAGAGCAAGCCTTGGTCAATATGAAGCACAAGTTCTCAATCCGTTCAAATCTAACGATAGTTCTGATGGTTCCAATTCAAACTTTATTTATACTCACAATCCATCTACTGCTAATCAATGTGAGAAACATGTTTCAG ] [+] EMBL CD188388 [ CAAACTTTATTTATACTCACAATCCATCTACTGCTAATCAATGTGAGAAACATGTTTCAAACGAGTCGCATCCTGATCACATTTCACATGTTATTGTAGCAGATGTTTGGTGCTGTCATGCATTATATATGTCACATAGATACTCCTCTGAATGCTCGAATGAATGAACTGACGTAACAAGTATGGAATGCATTCTGGAATCTGGAATGTTCAGGATTGACAACGTTCACATAGTGGGAAAATTCA] consensusID : consensus_9690#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 329 fasta sequence [TGGTTGGATTGAATGAACATGAACTATGCTCGAGATGACACACAGTATGTGATTTATGATAATTCCGTGTATTTTGCATATTTGTGTCTACAGGGTCGAATTGTAAGTTTCCATTTTCCAATGTGACAGTCTGATTCCAGTTAGAACTCAGTTGTCAGTTCAACCTGCACATCAAATCCTGTTTTTCTATTGAATCATAAATACACTTCTGCTTTTCAGATCAAGTCGCTGTTACAACGAACGACCAGGTTACTATTGTGAGAGCATGTGAATTTGAATTGAGGAAGTGAAATCAATACTTCAGATTGATGAACATTTCTTCATTCAAT] [-] EMBL CD061449 [TGGTTGGATTGAATGAACATGAACTATGCTCGAGATGACACACAGTATGTGATTTATGATAATTCCGTGTATTTTGCATATTTGTGTCTACAGGGTCGAATTGTAAGTTTCCATTTTCCAATGTGACAGTCTGATTCCAGTTAGAACTCAGTTGTCAGTTCAACCTGCACATCAAATCCTGTTTTTCTATTGAATCATAAATACACTTCTGCTTTTCAGATCAAGTCGCTGTTACAACGAACGACCAGGTTACTATTGTGAGAGCATGTGAATTTGAATTGAGGAAGTGAAATCAATACTTCAGATTGATGAACATTTCTTCATTCAAT] [-] EMBL CD061445 [TGGTTGGATTGAATGAACATGAACTATGCTCGAGATGACACACAGTATGTGATTTATGATAATTCCGTGTATTTTGCATATTTGTGTCTACAGGGTCGAATTGTAAGTTTCCATTTTCCAATGTGACAGTCTGATTCCAGTTAGAACTCAGTTGTCAGTTCAACCTGCACATCAAATCCTGTTTTTCTATTGAATCATAAATACACTTCTGCTTTTCAGATCAAGTCGCTGTTACAACGAACGACCAGGTTACTATTGTGAGAGCATGTGAATTTGAATTGAGGAAGTGAAATCAATACTTCAGATTGATGAACATTTCTTCATTCAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9690#1 --------GCACTTCAGTATGATGAAGATTTCTTCATTCAATCTCGTTCACTTCTTAACG 52 consensus_9690#3 ------------------------------------------------------------ consensus_9690#2 CATGGCTCCCGNGCCGCCATGGTCGGCCGCGGGAAATTCGATTTTG--AGGCACACACGA 58 consensus_9690#0 ------------------------------------------------------------ consensus_9690#4 ------------------------------------------------------------ consensus_9690#1 GTGTATTGAAGGAACATATGCTTGAAGAATCATATCCGTAATCGCACTCAACAATTATAG 112 consensus_9690#3 ------------------------------------------------------------ consensus_9690#2 GACAACGGAAGGAACACATGCTCAAACAATCACATCCATAATCGCACTCAACAATTATAG 118 consensus_9690#0 -------AACTGACGTAACAAGTATGGAATGCATTCTGGAATCTGGAATGCTCAGGATTG 53 consensus_9690#4 ------------------------------------------------------------ consensus_9690#1 ATATATTTAACGAGGTAACTGTTACGTTTCCTACTGCAATCAGGAAGTGTTTTGTAGGAT 172 consensus_9690#3 ------------------------------------------------------------ consensus_9690#2 ATAGATTTATTGAGGTAACTGATACGTTTCCTACTGCAGTCAGGAAGATTTTTGTGGGAC 178 consensus_9690#0 GCAACGTTCACTAGATTGGAGATTCGTGATGACGGTATGACGCAAATATATGGAGAAGAC 113 consensus_9690#4 ------------------------------------------------------------ consensus_9690#1 AAATGTTTCAAATGATCAAATGTCT------------GATAATGACGATGCTTATATTTG 220 consensus_9690#3 -----------------CGACCTC-------------GGTACC--CGATGCTTATATTTG 28 consensus_9690#2 AAATGTATCAAATGAATCAATTTCTGCTCGACTTTGTGATGATGATGTTGATGATATTTG 238 consensus_9690#0 CAACACGGATGTATGGACGATCTTATTCC-AGTCAATTCTAATTCTGAATTTCACGTTTC 172 consensus_9690#4 -----------------TGGTTGGATTG--AATGAACATGAACTATG--CTCGAGATGAC 39 * * * consensus_9690#1 AGATTCATTAGTTGCTAATGA-AGTCGTTAGTGAATTTGAGAAAAATATTTCATATGAAT 279 consensus_9690#3 AGAATCATTAGTTGCTAATGA-AGTCGTTAGTGAATTTGAGAAAAATATTTCATATGAAT 87 consensus_9690#2 AGATTCATTAGTTGCTAATGA-AGTCCTTAGTGAATTGAAGAAAGATATTTCATGTGAAG 297 consensus_9690#0 CCA-TCACAAGAAATCAATCTCTGTTAGGTGGTCTGTTCAGCTAGACGTTG-GTG-CTGC 229 consensus_9690#4 ACA-CAGTATGTGATTTATGATAATTCCGTG---TATTTTGC---ATATTT-GTGTCTAC 91 * * ** * * * * * ** * consensus_9690#1 GAAATAGTGGTGAAATACGTGATGTTGCTCGTTTCCACAATGCTTATGATTGCAGAGCAA 339 consensus_9690#3 GAAATAGTGGTGAAATACGTGATGTTGCTCGTTTCCAAAATGCTTATGATTGCAGAGCAA 147 consensus_9690#2 TAAATTGTGGTGAAATACGTGATGTTGCTCGTTTTCACAATGCTTATGATTGCAGAACAA 357 consensus_9690#0 ACGGTCGAATTGTAAGTTTCCATTTTCCAATGTGACAGTCTGATTCCAGTTAGAACTCAG 289 consensus_9690#4 AGGGTCGAATTGTAAGTTTCCATTTTCCAATGTGACAGTCTGATTCCAGTTAGAACTCAG 151 * * ** ** ** ** * * ** ** ** ** * ** consensus_9690#1 GCCTTGGT-CAATATGAAGCACAAGTTCT--CAATCTGTTCAAATCTAACGATAGTTCTG 396 consensus_9690#3 GCCTTGGT-CAATATGAAGCACAAGTTCT--CAATCCGTTCAAATCTAACGATAGTTCTG 204 consensus_9690#2 ACCTTGGT-CAATATGAAGCACAAGTTCT--CAATCTGTTCAAATCTAACGATAGTTCTG 414 consensus_9690#0 TTGTCAGTTCAACCTGCACATCAAATCCTGTTTTTCTATTGAATCATAAATACACCTCTG 349 consensus_9690#4 TTGTCAGTTCAACCTGCACATCAAATCCTGTTTTTCTATTGAATCATAAATACACTTCTG 211 * ** *** ** * *** * ** ** ** ** *** * * **** consensus_9690#1 ATGGTTCC-AATTCAAACTTTATTTATACTCACAATCCATCTACTGCTAATCAATGTGAG 455 consensus_9690#3 ATGGTTCC-AATTCAAACTTTATTTATACTCACAATCCATCTACTGCTAATCAATGTGAG 263 consensus_9690#2 AAGGTTCCCAATTCACACTTTATTTATACTCACAATCCATCTACTGCTAATCAATG---- 470 consensus_9690#0 CT--TTTCAGATCAAGTCGCTGTTACAACGAACGACCAGGTTACTATTGTGAGAGCATGT 407 consensus_9690#4 CT--TTTCAGATCAAGTCGCTGTTACAACGAACGACCAGGTTACTATTGTGAGAGCATGT 269 ** * ** * * * ** ** ** * * **** * * consensus_9690#1 AAACACGTTTCAAACGAGTCGCATCCTGATCACATTTCACATGTTATTGTAGCAGATGTT 515 consensus_9690#3 AAACATGTTTCAGACGAGTCGCATCCTGATCACATTTCACATGTTATTGTAGCAGATGTT 323 consensus_9690#2 ------------------------------------------------------------ consensus_9690#0 GAATTTGAATTGAGGAAGTGAAATCAATACTTCAGATTGATGAACATTTCTTCATTCAAT 467 consensus_9690#4 GAATTTGAATTGAGGAAGTGAAATCAATACTTCAGATTGATGAACATTTCTTCATTCAAT 329 consensus_9690#1 TGGTGCTTGTCATGCAT-ATATATGTCACATAG--------------------------- 547 consensus_9690#3 TGGTGCT-GTCATGCATTATATATGTCACATAGATACTCCTCTGAATGCTCGAATGAATG 382 consensus_9690#2 ------------------------------------------------------------ consensus_9690#0 CTCATTCAATGCTCAACGGAAGGAACACATGCTCAAACAATCACATCCATAATCGCACTC 527 consensus_9690#4 ------------------------------------------------------------ consensus_9690#1 ------------------------------------------------------------ consensus_9690#3 AACTGACGTAACAAGTATGGAATGCATTCTGGAATCTGGAATGTTCAGGATTGACAACGT 442 consensus_9690#2 ------------------------------------------------------------ consensus_9690#0 AACAATTATAGATAGATTTATTGAGGTAACTGATACGTTTCCTACTGCAGTCAGGAAGAT 587 consensus_9690#4 ------------------------------------------------------------ consensus_9690#1 ------------------------------------------ consensus_9690#3 TCACATAGTGGGAAAATTCA---------------------- 462 consensus_9690#2 ------------------------------------------ consensus_9690#0 TTTTGTGGGACAAATGTATCAAATGAATCAATTTCTGCTCAA 629 consensus_9690#4 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||