These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9695#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1071 fasta sequence [ACATAACCCTGTATAGCTGTTGATTACGGTTGGAAAGGACTTATTGCTCTTGGCAGTTTCACCAACATACTTATAATTGACCCTTGTTTCAGTAAATCTTTGCAGTCGCTTCAGGGTCACCGCAATAACATAGTAAATGTTCTGTGGGCTCCTGAAAATCACTATCATGATGATAAAAACCCTTTTCAATTAAAACTTGCTAGTGTTGACGCGTCTGGAGTAATAATTATTTGGGATGCTACTACATCATCTGCAACCTCAGAGTTCCGTGAGCCAGATTCACTCGTCTGGGATATATTATGGCTACCAAATCAGTGGGTTTCACGTGATTTGTTGGCTGTTCTCCACTCTCACAACAGATTCATTATCTGGAATACACAAACTCAAACAAGATTGTGGAAACACTCTTTTGGGGACGATGTGGTTTCTTTTTCTTTGGATATATTCTCTAATTCAAAGATGATTTTTTGCTCAAAGGAATATTTCATTGTGGAGAATTTCAACGTCACTTCGTGTGCTTTTGG-AAAGGCAGGGAACTAAACATTTCTGAGTCTGGTAGCAACAAGTGTTNTATTAATGAAATANACTCACGTGGAACAACATCAGGAGAAACGCCAGTGAAACTATCGTCTAGTGAACTAAAAGTCAGTCCGGGGAACTCTGATAGGACATGTGATTCTTCGAGTGATAATTCCCGAATAACATCTATTAGAACATGTTTGCAGGTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTTTTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCTTTAGATCCTTCTTGGCCTTCTTTCTCACGTACGCCCAAAACAAGTACATCATGTTGATTTTTCTGTCAACCAAATGAATGAGTTGAATATCATCGTAGCTTCAATCGATGGGCGTTTCCAGTTTTGGCAACTGCGAGCTGTTCGAGACTCAACTTTCTGTGATGAGGTGAAACCAATTTGGAGCCTTTCGGACCTGCTACCCCATGCACCTGTTGTAGATAAGGCTCCAATAAAGTTGTATCTC] [+] EMBL CD178265 [ACATAACCCTGTATAGCTGTTGATTACGGTTGGAAAGGACTTATTGCTCTTGGCAGTTTCACCAACATACTTATAATTGACCCTTGTTTCAGTAAATCTTTGCAGTCGCTTCAGGGTCACCGCAATAACATAGTAAATGTTCTGTGGGCTCCTGAAAATCACTATCATGATGATAAAAACCCTTTTCAATTAAAACTTGCTAGTGTTGACGCGTCTGGAGTAATAATTATTTGGGATGCTACTACATCATCTGCAACCTCAGAGTTCCGTGAGCCAGATTCACTCGTCTGGGATAT ] [+] EMBL CD153391 [ GGAAAGGACTTATTGCTCTTGGCAGTTTCACCAACATACTTATAATTGACCCTTGTTTCAGTAAATCTTTGCAGTCGCTTCAGGGTCACCGCAATAACATAGTAAATGTTCTGTGGGCTCCTGAAAATCACTATCATGATGATAAAAACCCTATTCAATTAAAACTTGCTAGTGTTGACGCGTCTGGAGTAATAATTATTTGGGATGCTACTACATCATCTGCAACCTCAGAGTTCCGTGAGCCAGATTCACTCGTCTTGGATATATTATGGCTACCAAATCAGTGGGTTTCACGTGATTTGTTGGCTGTTCTCCACTCTCACAACAGATTCATTATCTGGAATACACAAACTCAAACAAGATTGTGGAAACACTCTTTTGGGGACGATGTGGTTTCTTTTTCTTTGGATATATTCTCTAATTCAAAGATGATTTTTTGCTCAAAGGAATATTTCATTGTGGAGAATTTCAACGTCACTTCGTGTGCTTTTGG AAAGGCAGGGAACTAAACATTTCTGAGTCTGGTAGCAACAAGTGTTNTATTAATGAAATANAC ] [+] EMBL CD178640 [ GTGGTTTCTTTTTCTTTGGATATATTCTCTAATTCAAAGATGATTTTTTGCTCAAAGGAATATTTCATTGTGGAGAATTTCAACGTCACTTCGTGTGCTTTTGGAAAAGGCAGGAAACTAAACATTTCTGAGTCTGGTAGCAACAAGTGTTTTATTAATGAAATAAACTCACGTGGAACAACATCAGGAGAAACGCCAGTGAAACTATCGTCTAGTGAACTAAAAGTCAGTCCGGGGAACTCTGATAGGACATGTGATTCTTCGAGTGATAATTCCCGAATAACATCTATTAGAACATGTTTGCAGGTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTTTTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCTTTAGA ] [-] EMBL CD097650 [ TCGTCTAGTGAACTAAAAGTCAGTCCGGGGAACTCTGATAGGACATGTGATTCTTCGAGTGATAATTCCCGAATAACATCTATTAGAACATGTTTGCAGGTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTTTTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCTTTAGATCCTTCTTGGCCTTCTTTCTCACGTACGCCCAAAACAAGTACATCATGTTGATTTTTCTGTCAACCAAATGAATGAGTTGAATATCATCGTAGCTTCAATCGATGGGCGTTTCCAGTTTTGGCAACTGCGAGCTGTTCGAGACTCAACTTTCTGTGATGAGGTGAAACCAATTTGGAGCCTTTCGGACCTGCTACCCCATGCACCTGTTGTAGATAAGGCTCCAATAAAGTTGTATCTC] consensusID : consensus_9695#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [CCTCTCATTTACTGCGAAAACCTACTAAAGAATCTTCTGATCTCCACTCTGATAACAGCTGCACTTATGTTCTTGTTGCAACTGCTGCTTCTTCTAGACGCCCTAAACAAGTACATCATGTTGATTTTTCTGTCAACCAAATGAATGAGTTGAATATCGTCGTAGCTTCAATCGATGGGCGTTTCCAGTTTTGGCAACTGCGAGCTGTTCGAGACTCAACTTTCTGTGATGAGGTGAAACCAATTTGGAGCCTTTCGGACCTGCTACCCCATGCACCTGTTGTAGATAAGGCTCCAATAAAGTTGTATCTCGAATTAAATGGCTTATACTCTCCAAATAGACCAGAACCAACACTGTGTCGCGTATGTCCACCAAATCTGATGGGACCTTCAATGATAGATTCGATTCGTGGTCCATTAGTGGCTGTTGGAAATAATCGTGGTGATATTCAGATTCTAGGGAT] [-] EMBL CD060191 [CCTCTCATTTACTGCGAAAACCTACTAAAGAATCTTCTGATCTCCACTCTGATAACAGCTGCACTTATGTTCTTGTTGCAACTGCTGCTTCTTCTAGACGCCCTAAACAAGTACATCATGTTGATTTTTCTGTCAACCAAATGAATGAGTTGAATATCGTCGTAGCTTCAATCGATGGGCGTTTCCAGTTTTGGCAACTGCGAGCTGTTCGAGACTCAACTTTCTGTGATGAGGTGAAACCAATTTGGAGCCTTTCGGACCTGCTACCCCATGCACCTGTTGTAGATAAGGCTCCAATAAAGTTGTATCTCGAATTAAATGGCTTATACTCTCCAAATAGACCAGAACCAACACTGTGTCGCGTATGTCCACCAAATCTGATGGGACCTTCAATGATAGATTCGATTCGTGGTCCATTAGTGGCTGTTGGAAATAATCGTGGTGATATTCAGATTCTAGGGAT] consensusID : consensus_9695#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 440 fasta sequence [AATTCGATTGGGGAAAGCGACATCCAAAGATGATTTTTTGCTCAAAGGAATATTTCATTGTGGAGAATTTCAACGTCACTTCGTGTGCTTTTGGAAAAGGCAGGAAACTAAACATTTCTGAGTCTGGTAGCAACAAGTGTTTTATTAATGAAATAAACTCACGTGGAACAACATCAGGAGAAACGCCAGTGAAACTATCGTCTAGTGAACTAAAAGTCAGTCCGGGGAACTCTGATAGGACATGTGATTCTTCGAGTGATAATTCCCGAATAACATCTATTAGAACATGTTTGCAGGTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTTTTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCTTTAGATCCTTCTTGGCCTTCTTTCTCACGTGTTTATTCTTGC] [-] EMBL CD111246 [AATTCGATTGGGGAAAGCGACATCCAAAGATGATTTTTTGCTCAAAGGAATATTTCATTGTGGAGAATTTCAACGTCACTTCGTGTGCTTTTGGA ] [+] EMBL CD118988 [ TTTTTTGCTCAAAGGAATATTTCATTGTGGAGAATTTCAACGTCACTTCGTGTGCTTTTGGAAAAGGCAGGAAACTAAACATTTCTGAGTCTGGTAGCAACAAGTGTTTTATTAATGAAATAAACTCACGTGGAACAACATCAGGAGAAACGCCAGTGAAACTATCGTCTAGTGAACTAAAAGTCAGTCCGGGGAACTCTGATAGGACATGTGATTCTTCGAGTGATAATTCCCGAATAACATCTATTAGAACATGTTTGCAGGTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTTTTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCTTTAGATCCTTCTTGGCCTTCTTTCTCACGTGTTTATTCTTG ] [-] EMBL CD192046 [ CCAGTGAAACTATCGTCTAGTGAACTAAAAGTCAGTCCGGGGAACTCTGATAGGACATGTGATTCTTCGAGTGATAATTCCCGAATAACATCTATTAGAACATGTTTGCAGGTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTTTTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCTTTAGATCCTTCTTGGCCTTCTTTCTCACGTGTTTATTCTTGC] [-] EMBL CD192140 [ CCAGTGAAACTATCGTCTAGTGAACTAAAAGTCAGTCCGGGGAACTCTGATAGGACATGTGATTCTTCGAGTGATAATTCCCGAATAACATCTATTAGAACATGTTTGCAGGTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTTTTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCTTTAGATCCTTCTTGGCCTTCTTTCTCACGTGTTTATTCTTGC] consensusID : consensus_9695#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [GTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTTTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCTTTAGATCCTTCTTGGCCTTCTTTCTCACGTAAGTGGTAATTTTGATCGCTGAAAGAATCTGGGGTGGCTTTGCGTAATCCATTTTTTAAAGAAAACAACGCACCAATACATTATTTTATTGGCTGTTCATCATGCTTATCACTATAGAGACATATATTCAATACATGATGAAAATGTATGAATACGTATTTACCAGATTTCTGTCTGGATGCATAAGAGCAAAATTTCGTTTTCCGAGAGGATTTGACGTGGAAAGCATAGCTAGAGACTGCTAGAATAAGGAATATGTGTAGTTATATTTATAAGCATACTTCTGATTTGCAGGTTTATTCTTG] [+] EMBL CD118951 [GTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTTTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCTTTAGATCCTTCTTGGCCTTCTTTCTCACGTAAGTGGTAATTTTGATCGCTGAAAGAATCTGGGGTGGCTTTGCGTAATCCATTTTTTAAAGAAAACAACGCACCAATACATTATTTTATTGGCTGTTCATCATGCTTATCACTATAGAGACATATATTCAATACATGATGAAAATGTATGAATACGTATTTACCAGATTTCTGTCTGGATGCATAAGAGCAAAATTTCGTTTTCCGAGAGGATTTGACGTGGAAAGCATAGCTAGAGACTGCTAGAATAAGGAATATGTGTAGTTATATTTATAAGCATACTTCTGATTTGCAGGTTTATTCTTG] consensusID : consensus_9695#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 176 fasta sequence [GCTGTTGATTACGGTTGGAAAGGACTTATTGCTCTTGGCAGTTTCACCAACATACTTATAATTGACCCTTGTTTCAGTAAAGTAACAGATTTTAATGGTTTTCCTAACCTAATTCTAGTCTTTGCAGTCGCTTCAGGGTCACCGCAATAACATAGTAAATGTTCTGTGGGCTCCTG] [+] EMBL CD066388 [GCTGTTGATTACGGTTGGAAAGGACTTATTGCTCTTGGCAGTTTCACCAACATACTTATAATTGACCCTTGTTTCAGTAAAGTAACAGATTTTAATGGTTTTCCTAACCTAATTCTAGTCTTTGCAGTCGCTTCAGGGTCACCGCAATAACATAGTAAATGTTCTGTGGGCTCCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9695#0 ACATAACCCTGTATAGCTGTTGATTACGGTTGGAAAGGACTTATTGCTCTTGGCAGTTTC 60 consensus_9695#2 ------------------------------------------------------------ consensus_9695#4 ------------------------------------------------------------ consensus_9695#3 ------------------------------------------------------------ consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 ACCAACATACTTATAATTGACCCTTGTTTCAGTAAATCTTTGCAGTCGCTTCAGGGTCAC 120 consensus_9695#2 ------------------------------------------------------------ consensus_9695#4 ------------------------------------------------------------ consensus_9695#3 ------------------------------------------------------------ consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 CGCAATAACATAGTAAATGTTCTGTGGGCTCCTGAAAATCACTATCATGATGATAAAAAC 180 consensus_9695#2 ------------------------------------------------------------ consensus_9695#4 ------------------------------------------------------------ consensus_9695#3 ------------------------------------------------------------ consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 CCTTTTCAATTAAAACTTGCTAGTGTTGACGCGTCTGGAGTAATAATTATTTGGGATGCT 240 consensus_9695#2 ------------------------------------------------------------ consensus_9695#4 ------------------------------------------------------------ consensus_9695#3 ------------------------------------------------------------ consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 ACTACATCATCTGCAACCTCAGAGTTCCGTGAGCCAGATTCACTCGTCTGGGATATATTA 300 consensus_9695#2 ------------------------------------------------------------ consensus_9695#4 ------------------------------------------------------------ consensus_9695#3 ------------------------------------------------------------ consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 TGGCTACCAAATCAGTGGGTTTCACGTGATTTGTTGGCTGTTCTCCACTCTCACAACAGA 360 consensus_9695#2 ------------------------------------------------------------ consensus_9695#4 ------------------------------------------------------------ consensus_9695#3 ------------------------------------------------------------ consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 TTCATTATCTGGAATACACAAACTCAAACAAGATTGTGGAAACACTCTTTTGGGGACGAT 420 consensus_9695#2 ------------------------------------------------------------ consensus_9695#4 ------------------------------------------------------------ consensus_9695#3 ------------------------------------------------------------ consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 GTGGTTTCTTTTTCTTTGGATATATTCTCTAATTCAAAGATGATTTTTTGCTCAAAGGAA 480 consensus_9695#2 --------AATTCGATTGGGGAAAGCGAC--ATCCAAAGATGATTTTTTGCTCAAAGGAA 50 consensus_9695#4 ------------------------------------------------------------ consensus_9695#3 -------GTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTTTTAGGAGGGAG 53 consensus_9695#1 ----CCTCTCATTTACTGCGAAAACCTACTAAAGAATCTTCTGATCTCCACTCTGATAAC 56 consensus_9695#0 TATTTCATTGTGGAGAATTTCAACGTCACTTCGTGTGCTTTTGGAAA-GGCAGGGAACTA 539 consensus_9695#2 TATTTCATTGTGGAGAATTTCAACGTCACTTCGTGTGCTTTTGGAAAAGGCAGGAAACTA 110 consensus_9695#4 ------------------------------------GCTGTTGATTACGGTTGGAAAGGA 24 consensus_9695#3 ATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTC--TTTAGATCCTT 111 consensus_9695#1 AGCTGCACTTATGTTCTTGTTGCAACTGCTGCTTCTTCTAGACGCCCTAAACAAGTACAT 116 * consensus_9695#0 AACATTTCTGAGTCTGGTA--GCAACAAGTGTTNT-ATTAATGAAATANACTCACGTGGA 596 consensus_9695#2 AACATTTCTGAGTCTGGTA--GCAACAAGTGTTTT-ATTAATGAAATAAACTCACGTGGA 167 consensus_9695#4 CTTATTGCTCTTGGCAGTT--TCACCAACATACTT-ATAATTGACCCTTGTTTCAGTAAA 81 consensus_9695#3 CTTGGCCTTCTTTCTCACG--TAAGTGGTAATTTTGATCGCTGAAAGAATCTGGGGTGGC 169 consensus_9695#1 CATGTTGATTTTTCTGTCAACCAAATGAATGAGTTGAATATCG-TCGTAGCTTCAATCGA 175 * * * * * * * consensus_9695#0 ACAACATCAGGAGAAACGCCAGTGAAACTATCGTCTAGTG----AACTAAAAGTCAGTCC 652 consensus_9695#2 ACAACATCAGGAGAAACGCCAGTGAAACTATCGTCTAGTG----AACTAAAAGTCAGTCC 223 consensus_9695#4 GTAACAG-ATTTTAATGGTTTTCCTAACCTAATTCTAGT------CTTTGCAGTCGCTTC 134 consensus_9695#3 TTTGCGTAATCCATTTTTTAAAGAAAACAACGCACCAATACATTATTTTATTGGCTGTTC 229 consensus_9695#1 TGGGCGTTTCCAGTTTTGGCAACTGCGAGCTGTTCGAGACTCAACTTTCTGTGATGAGGT 235 * * * * * consensus_9695#0 GGGGA-ACTCTGA----TAGGACATGTGATTCTTCGAGTGATAATTCCCGAATAACATCT 707 consensus_9695#2 GGGGA-ACTCTGA----TAGGACATGTGATTCTTCGAGTGATAATTCCCGAATAACATCT 278 consensus_9695#4 AGGGTCACCGCAA----TAACATA-GTAAATGTTC---TGTGGGCTCCTG---------- 176 consensus_9695#3 ATCATGCTTATCA----CTATAGAGACATATATTC-------AATACATGATGAAAATGT 278 consensus_9695#1 GAAACCAATTTGGAGCCTTTCGGACCTGCTACCCCATGCACCTGTTGTAGATAAGGCTCC 295 * * * consensus_9695#0 ATTAGAACATGTTTGCAGGTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTT 767 consensus_9695#2 ATTAGAACATGTTTGCAGGTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTT 338 consensus_9695#4 ------------------------------------------------------------ consensus_9695#3 ATGAATACGTATTTACCAGATTTCTGTC--TGGATGCATAAGAGCAAAATTTCGTTTTCC 336 consensus_9695#1 AATAAAGTTGTATCTCGAATTAAATGGCTTATACTCTCCAAATAGACCAGAACCAACACT 355 consensus_9695#0 TTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCT 827 consensus_9695#2 TTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCT 398 consensus_9695#4 ------------------------------------------------------------ consensus_9695#3 GAGAGGATTTGACGTGGAAAGCATAGCTAGAGACTGCTA-GAATAAGGAATATGTGTAGT 395 consensus_9695#1 GTGTCGCGTATGTCCACCAAATCTGATGGGACCTTCAATGATAGATTCGATTCGTGGTCC 415 consensus_9695#0 TTAGATCCTTCTTGGCCTTCTTTCTCACGTACGCCCAAAACAAGTACATCATGTTGATTT 887 consensus_9695#2 TTAGATCCTTCTTGGCCTTCTTTCTCACGTGTTT---ATTCTTGC--------------- 440 consensus_9695#4 ------------------------------------------------------------ consensus_9695#3 TATATTTATAAGCATACTTCTGATTTGCAGGTTT---ATTCTTG---------------- 436 consensus_9695#1 ATTAGTGGCTGTTGGAAATAATCGTGGTGATATTCAGATTCTAGGGAT------------ 463 consensus_9695#0 TTCTGTCAACCAAATGAATGAGTTGAATATCATCGTAGCTTCAATCGATGGGCGTTTCCA 947 consensus_9695#2 ------------------------------------------------------------ consensus_9695#4 ------------------------------------------------------------ consensus_9695#3 ------------------------------------------------------------ consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 GTTTTGGCAACTGCGAGCTGTTCGAGACTCAACTTTCTGTGATGAGGTGAAACCAATTTG 1007 consensus_9695#2 ------------------------------------------------------------ consensus_9695#4 ------------------------------------------------------------ consensus_9695#3 ------------------------------------------------------------ consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 GAGCCTTTCGGACCTGCTACCCCATGCACCTGTTGTAGATAAGGCTCCAATAAAGTTGTA 1067 consensus_9695#2 ------------------------------------------------------------ consensus_9695#4 ------------------------------------------------------------ consensus_9695#3 ------------------------------------------------------------ consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 TCTC 1071 consensus_9695#2 ---- consensus_9695#4 ---- consensus_9695#3 ---- consensus_9695#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||