These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9696#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 884 fasta sequence [GGATGCACATACTTTTTTCTCAAATTCCCACATTCAACTACCTTTATAGGTTTCAAATCTAATCAAAATGATTTATTAGCATTATTATTAATGTAGGA-TTTATTAACAGCA-GGGAATAGTATAGAGAATTCAATTGCATACAAGTCGTATAATCAGATGGTCATCGAACAAATTTCAAGAAAATATATACGATGAACGCACAAATCAATATCATAACCGGAATGACGGCAAATAATGAGAAATAATGTTCATGCAATGGTACGTTGCTAGTTCTAGTAGGATATTGGTTAGTTGGACAAAGATTATCATTTAAAGAATTTGCAGTGGATATTTCATTGGAAATAGCATTCTTGTTAGAAATCTGTGTTTTGGTATCACACAAAAGTGTACTGGCAAGAAGCTTTTGTAAATGTTCTATTTGACTATTAGCAGTATTTAATTGTTTCGATAAATTATCACGTTCAAGTAACAATTCATTAGCTTCTGCTTGTGCTCTTCTGGTTTCAGATATTAGACGATGATGATCAGCACGACTTGTCGCTACATCGGTTTCAATTACAGCGATTCGACTTTTTAGTGCATCGCATTCTCCTCGAACCAATAACA-GT-AACTCTGCTTTAGCGGCATCTTGTTTTCTTAAATCTTCAGTTAA-TTGTTTATATGTTTCAATCTCATTCGCGGATTCCATTAGCTCATTGTGTAGTTTTGAAAGTTCCTCATCTGTATGCGAATCTTTATCCATACCGCTTGCTTGCAAATGATTAATTTCAACTTTCTGGTTGGCTGTCTCATCCACTTCAGTAGATTGAATATGATCGGTAAGTGTTTCTGTTCCTAGACTAACATCCATTTTCGTTACATGAGTGGTCATGCTCTCCACCTTG] [+] EMBL CD181669 [GGATGCACATACTTTTTTCTCAAATTCCCACATTCAACTACCTTTATAGGTTTCAAATCTAATCAAAATGATTTATTAGCATTATTATTAATGTAGGATTTTATTAACAGCAGGGGAATAGTATAGAGAATTCAATTGCATACAAGTCGTATAATCAGATGGTCATCGAACAAATTTCAAGAAAATATATACGATGAACGCACAAATCAATATCATAACCGGA ] [-] EMBL CD181549 [ GGA TTTATTACNAGCA GGGAATAGTATAGAGAATTCAATTGCATACAAGTCGTATAATCAGATGGTCATCGAACAAATTTCAAGAAAATATATACGATGAACGCACAAATCAATATCATAACCGGAATGACGGCAAATAATGAGAAATAATGTTCATGCAATGGTACGTTGCTAGTTCTAGTAGGATATTGGTTAGTTGGACAAAGATTATCATTTAAAGAATTTGCAGTGGATATTTCATTGGAAATAGCATTCTTGTTAGAAATCTGTGTTTTGGTATCACACAAAAGTGTACTGGCAAGAAGCTTTTGTAAATGTTCTATTTGACTATTAGCAGTATTTAATTGTTTCGATAAATTATCACGTTCAAGT ] [+] EMBL CD126243 [ ATGTTCATGCAA GGTACGTTGCTAGTTCTAGTAGGATATTGGTTAGTTGGACAAAGATTATCATTTAAAGAATTTGCAGTGGATATTTCATTGGAAATAGCATTCTTGTTAGAAATCTGTGTTTTGGTATCACACAAAAGTGTACTGGCAAGAAGCTTTTGTAAATGTTCTATTTGACTATTAGCAGTATTTAATTGTTTCGATAAATTATCACGTTCAAGTAACAATTCATTAGCTTCTGCTTGTGCTCTTCTGGTTTCAGATATTAGACGATGATGATCAGCACGACTTGTCGCTACATCGGTTTCAATTACAGCGATTCGACTTTTTAGTGCATCGCATTCTCCTCGAACCAATAACA GT AACTCTGCTTTAGCGGCATCTTGTTTTCTTAAATCTTCAGTTAA TTGTTTATATGTTTCAATCTCATTCGCGG ] [-] EMBL CD126249 [ CATGCAATGGTACGTTGCTAGTTCTAGTAGGATATTGGTTAGTTGGACAAAGATTATCATTTAAAGAATTTGCAGTGGATATTTCATTGGAAATAGCATTCTTGTTAGAAATCTGTGTTTTGGTATCACACAAAAGTGTACTGGCAAGAAGCTTTTGTAAATGTTCTATTTGACTATTAGCAGTATTTAATTGTTTCGATAAATTATCACGTTCAAGTAACAATTCATTAGCTTCTGCTTGTGCTCTTCTGGTTTCAGATATTAGACGATGATGATCAGCACGACTTGTCGCTACATCGGTTTCAATTACAGCGATTCGACTTTTTAGTGCATCGCATTCTCCTCGAACCAATAACA GT AACTCTGCTTTAGCGGCATCTTGTTTTCTTAAATCTTCAGTTAA TTG TTATATGTTTCAATCTCATTCGCGGATTCCATTAGCTCA TGTGTAGTTTTGAA ] [-] EMBL CD126187 [ CATGCAATGGTACGTTGCTAGTTCTAGTAGGATATTGGTTAGTTGGACAAAGATTATCATTTAAAGAATTTGCAGTGGATATTTCATTGGAAATAGCATTCTTGTTAGAAATCTGTGTTTTGGTATCACACAAAAGTGTACTGGCAAGAAGCTTTTGTAAATGTTCTATTTGACTATTAGCAGTATTTAATTGTTTCGATAAATTATCACGTTCAAGTAACAATTCATTAGCTTCTGCTTGTGCTCTTCTGGTTTCAGATATTAGACGATGATGATCAGCACGACTTGTCGCTACATCGGTTTCAATTACAGCGATTCGACTTTTTAGTGCATCGCATTCTCCTCGAACCAATAACACGTCACCTCTGCTTTAGCGGCATCTTGTTTTCTTAAATCTTCAGTTAATTTGTTTATATGTTTCAATCTCATTCGCGGga ] [+] EMBL CD129506 [ GTTAGTTGGACAAAGATTATCATTTAAAGAATTTGCAGTGGATATTTCATTGGAAATAGCATTCTTGTTAGAAATCTGTGTTTTGGTATCACACAAAAGTGTACTGGCAAGAAGCTTTTGTAAATGTTCTATTTGACTATTAGCAGTATTTAATTGTTTCGATAAATTATCACGTTCAAGTAACAATTCATTAGCTTCTGCTTGTGCTCTTCTGGTTTCAGATATTAGACGATGATGATCAGCACGACTTGTCGCTACATCGGTTTCAATTACAGCGATTCGACTTTTTAGTGCATCGCATTCTCCTCGAACCAATAACA GT AACTCTGCTTTAGCGGCATCTTGTTTTCTTAAATCTTCAGTTAA TTGTTTATATGTTTCAATCTCATTCGCGGATTCCATTAGCTCATTGTGTAGTTTTGAAAGTTCCTCATCTGTATGCGAATCTTTATCCATACCGCTTGCTTGCAAATGATTAATTTCAACTTTCTGGTTGGCTGTCTCATCCACTTCAGTAGATTGAATATGATCGGTAAGTGTTT ] [-] EMBL CD066605 [ TCAATTACAGCGATTCGACTTTTTAGTGCATCGCATTCTCCTCGAACCAATAACA GT AACTTTGCTTTAGCGGCATCTTGTTTTCTTAAATCTTCAGTTAA TTGTTTATATGTTTCAATCTCATTAGCGGATTCCATTAGCTCATTGTGTAGTTTTGAAAGTTCATCATGTGTATGCGAATCTTTATCCATACCGCTTGCTTGCAAATGATTAATTTCAACTTTCTGGTTGGCTGTCTCATCCACTTCAGTAGATTGAATATGATCGGTAAGTGTTTCTGTTCATAGACTAACATCCATTTTGGTTACATGAGTGGTCATGCTCTCCACCTTG] [-] EMBL CD192773 [ AAATCTTCAGTTAA TTGTTTATATGTTTCAATCTCATTCGCGGATTCCATTAGCTCATTGTGTAGTTTTGAAAGCTCCTCATCTGTATGCGAATCTTTATCCATACCGCTTGCTTGCAAATGATTAATTTCAACTTTCTGGTTGGCTGTCTCATCCACTTCAGTAGATTGAATATGATCGGTAAGTGTTTCTGATCCTAGACTAACATCCATTTTCGTT ] [-] EMBL CD067163 [ CTCATTGTGTAGTTTTGAAAGTTCCTCATCTGTATGCGAATCTTTATCCATACCGCTTGCTTGCAAATGATTAATTTCAACTTTCTGGTTGGCTGTCTCATCCACTTCAGTAGATTGAATATGATCGGTAAGTGTTTCTGTTCCTAGACTAACATCCATTTTCGTTA ] consensusID : consensus_9696#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 379 fasta sequence [CAATAATGATACTAGTAATACGAGGAGAATAATGGAAAAGCGGTTTTTTGAAAATCTCTAAAGTAACTACAGACAGAGAAGAAACAAACTGAATAACTGTTGACAGTCATTGGTTTTAAATGTACAATAGTAAGCATACTGATTTATATCAACTACACATATGTATAAAAAACAAGTTTATTGATGGAAAATGATAAGAGGTGATACAATTAAAAAGCTAGTTGCTCGGTCGATGAACTGATCATAAATTGAACCAAAATGGATAATCCCCGAGATAGACAATACATATTGGTACAAGTGTAATATAGTGAGTAGAAATCCACGAAATTGCTGACTGAAAGATGGATGCACATACTTTTTTCTCAAATTCCCACATTCA] [+] EMBL CD067472 [CAATAATGATACTAGTAATACGAGGAGAATAATGGAAAAGCGGTTTTTTGAAAATCTCTAAAGTAACTACAGACAGAGAAGAAACAAACTGAATAACTGTTGACAGTCATTGGTTTTAAATGTACAATAGTAAGCATACTGATTTATATCAACTACACATATGTATAAAAAACAAGTTTATTGATGGAAAATGATAAGAGGTGATACAATTAAAAAGCTAGTTGCTCGGTCGATGAACTGATCATAAATTGAACCAAAATGGATAATCCCCGAGATAGACAATACATATTGGTACAAGTGTAATATAGTGAGTAGAAATCCACGAAATTGCTGACTGAAAGATGGATGCACATACTTTTTTCTCAAATTCCCACATTCA] [+] EMBL CD066807 [CAATAATGATACTAGTAATACGAGGAGAATAATGGAAAAGCGGTTTTTTGAAAATCTCTAAAGTAACTACAGACAGAGAAGAAACAAACTGAATAACTGTTGACAGTCATTGGTTTTAAATGTACAATAGTAAGCATACTGATTTATATCAACTACACATATGTATAAAAAACAAGTTTATTGATGGAAAATGATAAGAGGTGGTACAGTTAAAAAGCTAGTTGCTTGGTCGATGAACTGATCATAAATTGAACCAAAATGGATAATCCCCGAGATAGACAATACATATTGGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9696#0 GGATGCACATACTTTTTTCTCAAATTCCCACATTCAACTACCTTTATAGGTTTCAAATCT 60 consensus_9696#1 -------------------------------------CAATAATGATA--CTAGTAATAC 21 * * * *** * *** consensus_9696#0 AATCAAAATGATTTATTAGCA--TTATTATTAATGTAGGATTTATTAACAGCAGGGAATA 118 consensus_9696#1 GAGGAGAATAATGGAAAAGCGGTTTTTTGAAAATCTCTAAAGTAACTACAGACAGAGAAG 81 * * *** ** * *** ** ** *** * * ** **** * * consensus_9696#0 GTATAGAGAATTCAATTGCATACAAGTCGTATAATCAGATGGTCATCGAACAAATTTCAA 178 consensus_9696#1 AAACAAACTGAATAACTGTTGACAGTCATTGGTTTTAAATGTACAAT-AGTAAG---CAT 137 * * * ** ** *** * * * *** ** * ** ** consensus_9696#0 GAAAATATATACGATGAACGCACAAATCAATATCATAACCGGAATGACGGCAAATAATGA 238 consensus_9696#1 ACTGATTTATATCAACTACACATATGTATAAAAAACAAGTTTATTGATGGAAAATGATAA 197 ** **** * ** ** * * * * * ** * *** ** **** ** * consensus_9696#0 GAAATAATGTTCATGCAATGGTACGTTGCTAGTTCTAGTAGGATATTGGTTAGTTGGACA 298 consensus_9696#1 GAGGTGATACAATTAAAAAGCTA-GTTGCTCGGTC-GATGAACTGATCATAAATTGAACC 255 ** * ** * ** * ** ****** * ** * * * * * *** ** consensus_9696#0 AAGATT-ATCATTTAAAGAATTTGCAGTGGATATTTCATTGGAAATAGCATTCTTGTTAG 357 consensus_9696#1 AAAATGGATAATCCCCGAGATAGACAATACATATTGGTACAAGTGTAATATAGTGAGTAG 315 ** ** ** ** ** ** * ***** ** ** * *** consensus_9696#0 AAATCTGTGTTTTGGTATCACACAAAAGTGTACTGGCAAGAAGCTTTTGTAAATGTTCTA 417 consensus_9696#1 AAATCCACGAAATTGC-TGACTGAAAGATGGATGCACATACTTTTTTCTCAAATTCCCAC 374 ***** * * * * ** *** ** * ** *** **** * consensus_9696#0 TTTGACTATTAGCAGTATTTAATTGTTTCGATAAATTATCACGTTCAAGTAACAATTCAT 477 consensus_9696#1 ATTCA------------------------------------------------------- 379 ** * consensus_9696#0 TAGCTTCTGCTTGTGCTCTTCTGGTTTCAGATATTAGACGATGATGATCAGCACGACTTG 537 consensus_9696#1 ------------------------------------------------------------ consensus_9696#0 TCGCTACATCGGTTTCAATTACAGCGATTCGACTTTTTAGTGCATCGCATTCTCCTCGAA 597 consensus_9696#1 ------------------------------------------------------------ consensus_9696#0 CCAATAACAGTAACTCTGCTTTAGCGGCATCTTGTTTTCTTAAATCTTCAGTTAATTGTT 657 consensus_9696#1 ------------------------------------------------------------ consensus_9696#0 TATATGTTTCAATCTCATTCGCGGATTCCATTAGCTCATTGTGTAGTTTTGAAAGTTCCT 717 consensus_9696#1 ------------------------------------------------------------ consensus_9696#0 CATCTGTATGCGAATCTTTATCCATACCGCTTGCTTGCAAATGATTAATTTCAACTTTCT 777 consensus_9696#1 ------------------------------------------------------------ consensus_9696#0 GGTTGGCTGTCTCATCCACTTCAGTAGATTGAATATGATCGGTAAGTGTTTCTGTTCCTA 837 consensus_9696#1 ------------------------------------------------------------ consensus_9696#0 GACTAACATCCATTTTCGTTACATGAGTGGTCATGCTCTCCACCTTG 884 consensus_9696#1 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||