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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9701#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 911 fasta sequence
[AGTGATGCAATACAGTCCTCAAAATCTCCTCTTGATGGATCAAATGCAAAGATAACTAGGTCCAGTTAATACCAAAGGGCCTGCCCCACCTATTCCTGTTTTATCCCGACATGATATCAGACGCGATCGACAAAGCAACTTCATTCCATACACAGAATTACACAAACAGCTATATGATATAAACAATGAACTTTCCAATCTGGAACTATCTGCTCGCGAAATTCAAACAAGTATTAGAGAAATGTCTGAAAATAATGGAAGCGTCAAGAGACTATTAAAGAAATGGCTCCATACCGTTGAATTAAAGGATAATCTTTTCAAAAAGGGATCAGAGTTACTTCAAAGGCTTCGTTGTCAAGAGCTAGAGGACCGTCATGCTGATTTAGAATATGAAGGGCGAACTCTAATGGCCAAACAAGACATTCTAAAAACTAAAGAAGAAAAAGCTCGTGAAGAAGAGCTAATCTCTGACTTGTTGTGTGTGGTTGACAAAAGAGCTGAACTTTCAGAATCCACTGGAGATTTCGAACCGAAGCATCGAGCGAGATCATCTGGTCGAAAAACCATCGAAGGTAAATTCAAACAAATATGCCTCAGTTTGCGACATTCTAGTCTGTCACAAACAAATTTATCATCCATTCGGGATAAATCATTGAAAAAAGTACGAAAGTTGAAAGCTTCTACCATATCTCGATTGAAAAACAAGACAATTTTTCGATAGGAATCGCTAATTTTTTAAACCTATATATGCGGATAGACCCGACTNTGCATCGAAAGGACTATCATCCCATTAATAGTATTAACATGGTATGAAGTTNTATGCATCCAGTATACTCTGCATTGTTTTTACAACAGTTTTTATCTGTTTACTNTTATTATCATCAAATGGTTTTTCTTATTTAGAAATAGAA]
[-] EMBL CD137069 [AGTGATGCAATACAGTCCTCAAAATCTCCTCTTGATGGATCAAATGCAAAGATAACTAGGTCCAGTTAATACCAAAGGGCCTGCCCCACCTATTCCTGTTTTATCCCGACATGATATCAGACGCGATCGACAAAGCAACTTCATTCCATACACAGAATTACACAAACAGCTATATGATATAAACAATGAACTTTCCAATCTGGAACTATCTGCTCGCGAAATTCAAACAAGTATTAGAGAAATGTCTGAAAATAATGGAAGCGTCAAGAGACTATTAAAGAAATGGCTCCATACCGTTGAATTAAAGGATAATCTTTTCAAAAAGGGATCAGAGTTACTTCAAAGGCTTCGTTGTCAAGAGCTAGAGGACCGTCATGCTGATTTAGAATATGAAGGG ]
[+] EMBL CD080212 [ CGACATGATATCAGACGCGATCGACAAAGCAACTTCATTCCATACACAGAATTACACAAACAGCTATATGATATAAACAATGAACTTTCCAATCTGGAACTATCTGCTCGCGAAATTCAAACAAGTATTAGAGAAATGTCTGAAAATAATGGAAGCGTCAAGAGACTATTAAAGAAATGGCTCCATACCGTTGAATTAAAGGATAATCTTTTCAAAAAGGAATCAGAGTTACTTCAAAGGCTTCGTTGTCAAGAGCTAGAGGACCGTCATGCTGATTTAGAATATGAACTACGAACTCTAATGGCCAAACAAGACATTCTAAAAACTAAAGAAGAAAAAGCTCGTGAAGAAGAGCTAATCTCTGACTTGTTGTGTGTGGTTGACAAAAGAGCTGAACTTTCAGAATCCACTGGAGATTTCGAACCGAAGCATCGAGCGAGATCATCTGGTCGAAAAACCATCGAAGGTAAATTCAAACAAATATGCCTCAGTTTGCGACATTCTAGTCTGTCACAAACAAATTTATCATCCATTCGGGATAAATCATTGAAAAAAGTACGAAAGTTGAAAGCTTCTACCATATCTCGATTGAAAAACAAGACAATTTTTCGATAGGAATCGCTAATTTTTTAAACCTATATATGCGGATAGACCCGACTNTGCATCGAAAGGACTATCATCCCATTAATAGTATTAACATGGTATGAAGTTNTATGCATCCAGTATACTCTGCATTGTTTTTACAACAGTTTTTATCTGTTTACTNTTATTATCATCAAATGGTTTTTCTTATTTAGAAATAGAA]
consensusID : consensus_9701#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 821 fasta sequence
[TCATCTGGGACCAATTTTTCCACGGAAAAAGTTTGATTATTCTGTTCCGTGTACCTATTTCTAAAATTAATAGGCGTTGATACCAGAGATGGAGGGTTTGATATACTTGATATGTTTGAGTGGTCAGAATCTGAAGTATTATTAATTTCTTCCGAGTCTGAGGCTGATAAATCGTCGTCAAATGGATTATAAGGCTTATATGTACATTCGTGCTGAGAGTTCACATCATGTGGAGAGTCATCTTCGAACGGATTTAAAGCAGAAGGATAGAAAACTATGTTCTGATGTCTTGGATCAGAGTTATTTCTATGATGTTCTATGTCAGCTACTTTTTTAGCTTCTGTCTTCAAAACACTATTCATTTCAGAAGATGCATTATTACTTAAAACATCAGGAAGTGGTGGTCTTGAAGGAGGTTTGCGTGTTGATTGACGTTTTTTATTGCTAACAGTGTCTAATTCTTTTTGTGAACTGAATCTTGTTGGGAATGAATTCGCTTCTGAGAATTTAGTCAGCGTTGGACCATCAGAACAGTTGGAATCTTTTAGTGTTTTGTTTCGTTCTTTGAGATAAGCTAGTTGGTTGTCACGATAGCAACTACGGTGGTAGTTCCTACTAAAAACAGTTAACTGCTCGACACGAAATACGGGTTCTCCACAAAGACCACATACAGGAAGTCTCTCCTCCTGTTCACACAAATATGATAAGTTTTTATCTGGAAGCTTATCTGAACCTAATTGCGCTGAAGACTATCTGATTATTGTGGCCAACCATCTTTTCAGACATTTCTCTAATACTTGTTTGAATTTCGCGAGCAGATA]
[+] EMBL CD198819 [TCATCTGGGACCAATTTTTCCACGGAAAAAGTTTGATTATTCTGTTCCGTGTACCTATTTCTAAAATTAATAGGCGTTGATACCAGAGATGGAGGGTTTGATATACTTGATATGTTTGAGTGGTCAGAATCTGAAGTATTATTAATTTCTTCCGAGTCTGAGGCTGATAAATCGTCGTCAAATGGATTATAAGGCTTATATGTACATTCGTGCTGAGAGTTCACATCATGTGGAGAGTCATCTTCGAACGGATTTAAAGCAGAAGGATAGAAAACTATGTTCTGATGTCTTGGATCAGAGNTATNTCTATGATGNTCTATGTCAGCTACTTTTTTAGCTTCTG ]
[+] EMBL CD143318 [TCATCTGGGACCAATTTTTCCACGGAAAAAGTTTGATTATTCTGTTCCGTGTACCTATTTCTAAAATTAATAGGCGTTGATACCAGAGATGGAGGGTTTGATATACTTGATATGTTTGAGTGGTCAGAATCTGAAGTATTATTAATTTCTTCCGAGTCTGAGGCTGATAAATCGTCGTCAAATGGATTATAAGGCTTATATGTACATTCGTGCTGAGAGTTCACATCATGTGGAGAGCCATCTTCGAA ]
[+] EMBL CD095713 [ CTTGATATGTTTGAGTGGTCAGAATCTGAAGTATTATTAATTTCTTCCGAGTCTGAGGCTGATAAATCGTCGTCAAATGGATTATAAGGCTTATATGTACATTCGTGCTGAGAGTTCACATCATGT GAGAGTCATCTTCGAACGGATTTAAAGCAGAAGGATAGAAAACTATGTTCTGATGTCTTGGATCAGAGTTATTTCTATGATGTTCTATGTCAGCTACTTTTTTAGCTTCTGTCTTCAAAACACTATTCATTTCAGAAGATGCATTATTACTTAAAACATCAGGAAGTGGTGGTCTTGAAGGAGGTTTGCGTGTTGATTGACGTTTTTTATTGCTAACAGTGTCTAATTCTTTTTGTGAACTGAATCTTGTTGGGAATGAATTCGCTTCTGAGAATTTAGTCAGCGTTGGACCATCAGAACAGTTGGAATCTTTTAGTGTTTTGTTTCGTTCTTTGAGATAAGCTAGTTGGTTGTCACGATAGCAACTACGGTGGTAGTTCCTACTANAAACAGTTAACTGCTCGACACGAAATACGGGTTCTCCACANAGACCACATACA ]
[+] EMBL CD095735 [ CTTGATATGTTTGAGTGGTCAGAATCTGAAGTATTATTAATTTCTTCCGAGTCTGAGGCTGATAAATCGTCGTCAAATGGATTATAAGGCTTATATGTACATTCGTGCTGAGAGTTCACATCATGT GAGAGTCATCTTCGAACGGATTTAAAGCAGAAGGATAGAAAACTATGTTCTGATGTCTTGGATCAGAGTTATTTCTATGATGTTCTATGTCAGCTACTTTTTTAGCTTCTGTCTTCAAAACACTATTCATTTCAGAAGATGCATTATTACTTAAAACATCAGGAAGTGGTGGTCTTGAAGGAGGTTTGCGTGTTGATTGACGTTTTTTATTGCTAACAGTGTCTAATTCTTTTTGTGAACTGAATCTTGTTGGGAATGAATTCGCTTCTGAGAATTTAGTCAGCGTTGGACCATCAGAACAGTTGGAATCTTTTAGTGTTTTGTTTCGATCTTTGAGATAAGCTAGTTGGTTGTCACGATAGCAACTACGGTGGTAGTTCCTACTANAAACAGTTAACTGCTCGACACGAAATACGGGTTCTCCACAAAGACCACATAC ]
[-] EMBL CD143314 [ TGAAGTATTATTAATTTCTTCCGAGTCTGAGGCTGATAAATCGTCGTCAAATGGATTATAAGGCTTATATGTACATTCGTGCTGAGAGTTCACATCATGTGGAGAGTCATCTTCGAACGGATTTAAAGCAGAAGGATAGAAAACTATGTTCTGATGTCTTGGATCAGAGTTATTTCTATGATGTTCTATGTCAGCTACTTTTTTAGCTTCTGTCTTCAAAACACTATTCATTTCAGAAGATGCATTATTACTTAAAACATCAGGAAGTGGTGGTCTTGAAGGAGGTTTGCGTGTTGATTGACGTTTTTTATTGCTAACAGTGTCTAATTCTTTTTGTGAACTGAATCTTGTTGGGAATGAATTCGCTTCTGAGAATTTAGTCAGCGTTGGACCATCAGAACAGTTGGAATCTTTTAGTGTTTTGTTTCGTTCTTTGAGATAAGCTAGTTGGTTGTCACGATAGCAACTACGGTGGTAGTTCCTACTAAAAACAGTTAACTGCTCGACACGAAATACGGGTTCTCCACAAAGACCACATACA ]
[+] EMBL CD198800 [ ATGTTCTGATGTCTTGGATCAGAGTTATTTCTATGATGTTCTATGTCAGCTACTTTTTTAGCTTCTGTCTTCAAAACACTATTCATTTCAGAAGATGCATTATTACTTAAAACATCAGGAAGTGGTGGTCTTGAAGGAGGTTTGCGTGTTGATTGACGTTTTTTATTGCTAACAGTGTCTAATTCTTTTTGTGAACTGAATCTTGTTGGGAATGAATTCGCTTCTGAGAATTTAGTCAGCGTTGGACCATCAGAACAGNTGGAATCTTTTAGTGTTTTGTTTCGTT ]
[-] EMBL CD095848 [ TGTTGTGATGTCTTGGATCAGAGTTATTTCTATGATGTTCTATGTCAGCTACTTTTTTAGCTTCTGTCTTCAAAACACTAGTCATTTCAGAAGATGCATTATTACTTAAAACATCAGGAAGTGGTGGTCTTGAAGGAGGTTTGCGTGTTGATTGACGTTTTTTATTGCTAACAGTGTCTAATTCTTTTTGTGAACTGAATCTTGTTGGGAATGAATTCGCTTCTGAGAATTTAGTCAGCGTTGGACCATCAGAACAGTTGGAATCTTTTAGTGTTTTGTTTCGTTCTTTGAGATAAGCTAGTTGGTTGTCACGATAGCAACTACGGTGGTAGTTCCTACTAAAAACAGTTAACTGCTCGACACGAAATACGGGTTCTCCACAAAGACCACATACA ]
[-] EMBL CD196149 [ TGAGAA TTAGTCAGCG TGGACCATCAGAACAGTTGGAATCTTNTAGTGTTTTGTNTCGTTCTNTGAGATAAGCTAGTTGGTTGTCACGATAGCAACTACGGTGGTAGTTCCTACTAAAAACAGTTAACTGCTCGACACGAAATACGGGTTCTCCACATAGACCACATGCAGGAAGTCTCTCCTCCTGTTCACACAAATATGATAAGTTTTTATCTGGAAGCTTATCTGAACCTAATTGCGCTGAAGACTATCTGATTATTGTGGCCAACCATCTTTTCAGACATTTCTCTAATACTTGTTTGAATTTCGCGAGCAGATA]
consensusID : consensus_9701#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence
[TCGAATACGTTTCTAAGTTGTATGGGTCAATAACAAGAAAGTCTTCAGGTCAATTAGGTTCAGATAAGCTTCCAGATAAAAACTTATCATATTTGGTATGCCCTTGCAAATATTATATAACGTGTTTTTAGTGTGAACAGGAGGAGGGACTTCCTGTATGTGGTCTTTGTGGAGAACCCGTATTTCGTGTCGAGCAGTTAACTGTTTTTAGTAGGAACTACCACCGTAGTTGCTATCGTGACAACCAACTAGCTTATCTCAAAGAACGAAACAAAACACTAAAAGATTCCAACTGTTCTGATGGTCCAACGCTGACTAAATTCTCAGGTAAAAAAAATTTGCTCGTCTCCTCTCTATCTTCATTTCTAGAAGCGAATTCATTCCCAACAAGATTCAGTTCACAAAAAGAATTAGACACTGTTAGCAATAAAAAACGTCAATCAACACGCAAACCTCCTTTTCAGACCACACTTCCTGATGTTTTAAGTAATAATGCATC]
[+] EMBL CD111974 [TCGAATACGTTTCTAAGTTGTATGGGTCAATAACAAGAAAGTCTTCAGGTCAATTAGGTTCAGATAAGCTTCCAGATAAAAACTTATCATATTTGGTATGCCCTTGCAAATATTATATAACGTGTTTTTAGTGTGAACAGGAGGAGGGACTTCCTGTATGTGGTCTTTGTGGAGAACCCGTATTTCGTGTCGAGCAGTTAACTGTTTTTAGTAGGAACTACCACCGTAGTTGCTATCGTGACAACCAACTAGCTTATCTCAAAGAACGAAACAAAACACTAAAAGATTCCAACTGTTCTGATGGTCCAACGCTGACTAAATTCTCAGGTAAAAAAAATTTGCTCGTCTCCTCTCTATCTTCATTTCTAGAAGCGAATTCATTCCCAACAAGATTCAGTTCACAAAAAGAATTAGACACTGTTAGCAATAAAAAACGTCAATCAACACGCAAACCTCCTTTTCAGACCACACTTCCTGATGTTTTAAGTAATAATGCATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9701#0 AGTGATGCAATACAGTCCTCAAAATCTCCTCTTGATGGATCAAATGCAAAGATAACTAGG 60
consensus_9701#2 ------------------------------------------------------------
consensus_9701#1 -----------------------------TCATCTGGGACCAATTTTTCCACGGAAAAAG 31
consensus_9701#0 TCCAGTTAATACCAAAGGGCCTGCCCCACCTATTCCTGTTTTATCCCGACATGATATCAG 120
consensus_9701#2 ------------------------------------------------------------
consensus_9701#1 TTTGATTATTCTGTTCCGTGTACCTATTTCTAAAATTAATAGGCGTTGATACCAGAGATG 91
consensus_9701#0 ACGCGATCGACAAAGCAACTTCATTCCA-TACACAGAATTACACAAACAGCTATATGATA 179
consensus_9701#2 ------------------------------------------------------------
consensus_9701#1 GAGGGTTTGATATACTTGATATGTTTGAGTGGTCAGAATCTGAAGTATTATTAATTTCTT 151
consensus_9701#0 TAAACAATGAACTTTCCAATCTGGAACTATCTGC-TCGCGAAATTCAAACAAGTATTAGA 238
consensus_9701#2 --------------------------------------------TCGAATACGTTTCTAA 16
consensus_9701#1 CCGAGTCTGAGGCTGATAAATCGTCGTCAAATGGATTATAAGGCTTATATGTACATTCGT 211
* * *
consensus_9701#0 GAAATGTCTGAAAATAATGGAAGCGTCAAGAGACTATTAAAGAAATGGCTCCATACCGTT 298
consensus_9701#2 GTTGTATGGGTCAATAACAAGAAAGTCTTCAGGTCAATTAGGTTCAGAT---AAGCTTCC 73
consensus_9701#1 GCTGAGAGTTCACATCATGTGGA-------GAGTCATCTTCGAACGGATTTAAAGCAGAA 264
* ** * * * * * *
consensus_9701#0 GAATTAAAGGATAATCTTTTCAAAAAGGGATCAGAGTTACTT-CA-AAGGCTTCGTTGTC 356
consensus_9701#2 AGATAAAAACTTATCATATTTGGTATGCCCTTGCAAATATTA-TATAACGTGTTTTTAGT 132
consensus_9701#1 GGATAGAAAACTATGTTCTGATGTCTTGGATCAGAGTTATTTCTATGATGT-TCTATGTC 323
** ** ** * * * * ** * * * * * *
consensus_9701#0 AAGAGCTAGAGGACCGTCATGCTGATTTAGAATATGAAGGG-CGAACTCTAATGGCCAAA 415
consensus_9701#2 GTGAACAGGAGGAGGGACTTCCTG-TATGTGGTCTTTGTGG-AGAACCCGTATTTCGTGT 190
consensus_9701#1 AGCTACTTTTTTAGCTTCTGTCTTCAAAACACTATTCATTTCAGAAGATGCATTATTACT 383
* * * ** * * *** **
consensus_9701#0 CAAGACATTCTAAAAACTAAAGAAGAAAAAGCTCGTGAAGAAGAGCTAATCTCTGACTTG 475
consensus_9701#2 CGAGCAGTT-----AACTG-------------TTTTTAGTAGGAACTACCACCGTAGTTG 232
consensus_9701#1 TAAAACATC--AGGAAGTGGTGG---------TCTTGAAGGAGGTTTG-CGTGTTGATTG 431
* * ** * * * * * * ***
consensus_9701#0 TTGTGTGTGGTTGACAAAAGAGCTGAACTTTCAGAATCCACTGGAGATTTCGAACCGAAG 535
consensus_9701#2 CTAT-CGTGAC-AACCAACTAGCTTATCTCAAAGAAC------GAAACAAAACACTAAAA 284
consensus_9701#1 ACGTTTTTTATTGCTAACAGTGTCTAATTCTTTTTGT------GAACTGAATCTTGTTGG 485
* * * * * * **
consensus_9701#0 CATCGAGCGAG-ATCATCTGGTCGAAAAACCATCGAAGG-TAAATTCAAACAAATATGCC 593
consensus_9701#2 GATTCCAACTG-TTCTGATGGTCCAACGCTGACTAAATTCTCAGGTAAAAAAAATTTGCT 343
consensus_9701#1 GAATGAATTCGCTTCTGAGAATTTAGTCAGCGTTGGACCATCAGAACAGTTGGA-ATCTT 544
* * ** * * * * * * * *
consensus_9701#0 TCAGTTTGCGACATTCTAGTCTGTCACAAACAAATTTATCATCCATTCGGGATAAATCAT 653
consensus_9701#2 CGTCTCCTCTCTATCTTCATTT-CTAGAAGCGAATTCATTCCCAACAAGATTCAGTTCAC 402
consensus_9701#1 TTAGTGTTTTGTTTCGTTCTTTGAGATAAGCTAGTTGGTTGTCA---CGATAGCAACTAC 601
* * * * * * ** * * ** * * * *
consensus_9701#0 TGAAAAAAGTACGAAAGTTGAAAGCTTCTACCATATCTCGATTGAAAAACAAGACAATTT 713
consensus_9701#2 AAAAAGAATTA--GACACTGTTAGCAA-TAAAAAACGTCAATCAACACGCAAACCTCCTT 459
consensus_9701#1 GGTGGTAGTTCC---TACTAAAAACAGTTAAC-TGCTCGACACGAAATACGGGTTCTCCA 657
* * * * * ** * * *
consensus_9701#0 TTC-GATAGGAATCGCTAATTTTTTAAACCTATATATGCGGATAGACCCGACTNTGCATC 772
consensus_9701#2 TTCAGACCACACTTCCTGATGTTTTAAGTAATAATGCATC-------------------- 499
consensus_9701#1 CAAAGACCACATACAGGAAGTCTCTCCTCCTGTTCACACAAATATGATAAGTTTT-TATC 716
** * * * *
consensus_9701#0 GAAAGGACTATCATCCCATTAATAGTATTAACATGGTATGAAGTTNTATGCATCCAGTAT 832
consensus_9701#2 ------------------------------------------------------------
consensus_9701#1 TGGAAGCTTATCTGAACCTAATTGCGCTGAAGACTATCTGATTATTGTGGCCAACCATCT 776
consensus_9701#0 ACTCTGCATTGTTTTTACAACAGTTTTTATCTGTTTACTNTTATTATCATCAAATGGTTT 892
consensus_9701#2 ------------------------------------------------------------
consensus_9701#1 TTTCAGACATTTCTCTAATACTTGTTTGAATTTCGCGAGCAGATA--------------- 821
consensus_9701#0 TTCTTATTTAGAAATAGAA 911
consensus_9701#2 -------------------
consensus_9701#1 -------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||