These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9712#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 872 fasta sequence [TTTTTTTTTTTTTTTTTAATATTCAATAAGTTTTATTTTCTTACAGTGAGGTTAACAAATTAATTGTATATCATACAAAAAAGTAGTAAGGTTGAATTTTTTACAAAAGACAGTGTTATATACAATGAAACACTTTTGACCGACATTCACTTAACACTTAACAGTTGGGTATTCCCGAACCAGCCTGGAGAAAATATGTTAACCCATGCCGTTTTGAGAACATTAGTTGTTTCGACGAAGAATTTTAATCTCAATAAAATCAGTAACTTTCAATCTGTATGAAATAAAATATCACTGCACAAAATAAAGTCCTCCTAAAGATGTATTTGCACGAGATAAATATTCACATGATCAATTGTCGTGAACCACACAAACTAGTTTACTGCCTTTTGCATGGTCTGTAGAACTTTCTGAGCGTGAGAAACAGCAGAATCAAACAAAACATTCCACGAGTTGACTACATCAC-TTTCATTTGTACTCGCCACAAA-TAAATTGTCCCACAAACCCGTTAAAAATGCATTGATCACAGAAAGATCGACGATAGCACCCTGAGAAACAGTTATGTGTACTGGGCCAGCATCCGTATCCCAAATATCTAACTCTCGTTTCGTTGGTTGGGCAATAATAGGGACTGTCTTTGACTTTCTATCAGCAACCGGGCGAGGAACGAAGCAGAAAGACAGCGAAACAGGCCATTCATTCACTTTTAAGGATATTGTCTCATTTAATGGTCCTGGTTTATATAATTCTAAGTAGGATCCCGCAGCTTGTTCATCCGTAACCGCATATAACTTTGTCCATTTTGTTGTACAAAGACTAACAAGTGCAGCGGGGACACAAGCATCTAGTAAGCACCCATCGTCCTCGTGACG] [+] EMBL AI395087 [TTTTTTTTTTTTTTTTTAATATTCAATAAGTTTTATTTTCTTACAGTGAGGTTAACAAATTAATTGTATATCATACAAAAAAGTAGTAAGGTTGAATTTTTTACAAAAGACAGTGTTATATACAATGAAACACTTTTGACCGACATTCACTTAACACTTAACAGTTGGGTATTCCCGAACCAGCCTGGAGAAAATATGTTAACCCATGCCGTTTTGAGAACATTAGTTGTTTCGACGAAGAATTTTAATCTCAATAAAATCAGTAACTTTCAATCTGTATGAAATAAAATATCACTGCACAAAATAAAGTCCTCCTAAAGATGTATTTGCACGAGATAAATATTCACATGATCAATTGTCGTGAg ] [+] EMBL CD073996 [ TAAGTTTTATTTTCTTACAGTGAGGTTAACAAATTAATTGTATATCATACAAAAAAGTAGTAAGGTTGAATTTTTTACAAAAGACAGTGTTATATACAATGAAACACTTTTGACCGACATTCACTTAACACTTAACAGTTGGGTATTCCCGAACCAGCCTGGAGAAAATATGTTAACCCATGCCGTTTTGAGAACATTAGTTGTTTCGATGAAGAATTTTAATCTCAATAAAATCAGTAACTTTCAATCTGTATGAAATAAAATATCACTGCACAAAATAAAGTCTTCTTATAGATGTATTTGCACGAGATAAATATTCACATGATCAATTGTCGTGAACCACACAAACTAGTTTACTGCCTTTTGCATGGTCTGTAGAACTTTCTGAGCGTGAGAAACAGCAGAATCAAACAAAACATTCCACGCGTTGACTACATCAC TTTCATTTGTACTCGCTACAAA TAAATTGTCCCACAAACCCGTTAAAAATGCATTGATCACAGAAAGATCGACGATAGCACCCTGAGAAACAGTTATGTGTACTGGGCCAGCATCCGTATCCCAAATATCTAACTCTCGTTTCGTTGGTTGGGCAATAATAGGGACTGTCTTTGACTTTCTATCAGCAACCGGGCGAGGAACGAAGCAGAAAGACAGCGAAACAGGCCATTCATT ] [-] EMBL CD168744 [ GTATTTGCACGAGATAAATATTCACATGATCAATTGTCGTGAACCACACAAACTAGTTTACTGCCTTTTGCATGGTCTGTAGAACTTTCTGAGCGTGAGAAACAGCAGAATCAAACAAAACATTCCACGAGTTGACTACATCAC TTTCATTTGTACTCGCCACAAA TAAATTGTCCCACAAACCCGTTAAAAATGCATTGATCACAGAAAGATCGACGATAGCACCCTGAGAAACAGTTATGTGTACTGGGCCAGCATCCGTATCCCAAATATCTAACTCTCGTTTCGTTGGTTGGGCAATAATAGGGACTGTCTTTGACTTTCTATCAGCAACCGGGCGAGGAACGAAGCAGAAAGACAGCGAAACAGGCCATTCATTCACTTTTAAGGATATTGTCTCATTTAATGGTCCTGGTTTATATAATTCTAAGTAGGATCCCGCAGCTTGTTCATCCGTAACCGCATATAACTTTGTCCATTTTGTTGTACAAAGACTAACAAGTGCAGCGGGGACACAAGCATCTAGTAAGCACCCATCG ] [+] EMBL CD134343 [ GGTCTGTAGAACTTTCTGAGCGTGAGAAACAGCAGAATCAAACGGGAGATTCCACGAGTTGACTACATCACATTTCATTTGTACTCGCCACAAAGTAAATTGTCCCACAAACCCGTTAAAAATGCATTGATCACAGAAAGATCGACGATAGCACCCTGAGAAACAGTTAT ] [-] EMBL CD078197 [ TTTTAAGGATATTGTCTCATTTAATGGTCCTGGTTTATATAATTCTAAGTAGGATCCCGCAGCTTGTTCATCCGTAACCGCATATAACTTTGTCCATTTTGTTGTACAAAGACTAACAAGTGCAGCGGGGACACAAGCATCTAGTAAGCACCCATCGTCCTCGTGACG] consensusID : consensus_9712#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 571 fasta sequence [TATGATTGCATTGCCTTTCTCAAAAATACATATGAATGCTTTGAAGACAGCTTGGGTCATTGGATGTGCATTTTCCCCTTCTATGAACTTTGTTGCTAGTGGTGGATTAGATAATGTCATATCTTATTTCGATTTAAAGTCTCAGGACGGCACCGCAGAGTTTGTCCGCGAGTTTACTGGTCATAATGGTTACATCGCATGTGTCCGATTCATTGATGATAATCGATTACTGAGTTGTTCTGGTGACAAAACTTGTGCACTGTGGGATATCGAAAAGTCTAAAATCACTACAAGTTTTCGTGGACACTCAAATGATGTTAACGCCATTGCCGTTTCGAAGCAGATGCCAAATTTGTTTGTTTCTGCATCTTCAGACCGCACTTGTCGGTTGGGGGATCTTCGGTGCGGCGAAGGTATGCAGTACTTCGAAGGACACCAGCAGGATGTTAATGGTGTGGACTTTTTCCCCGTCAATTCTTATGCTTTCGCCTCTTCTTCCGACGATGGCTCGTGTCATTTGTGGGATCTACGAGCTGATCAGGCAATTGGGGTCTATATTGATGACTTCATT] [-] EMBL CD180661 [TATGATTGCATTGCCTTTCTCAAAAATACATATGAATGCTTTGAAGACAGCTTGGGTCATTGGATGTGCATTTTCCCCTTCTATGAACTTTGTTGCTAGTGGTGGATTAGATAATGTCATATCTTATTTCGATTTAAAGTCTCAGGACGGCACCGCAGAGTTTGTCCGCGAGTTTACTGGTCATAATGGTTACATCGCATGTGTCCGATTCATTGATGATAATCGATTAC ] [+] EMBL CD196706 [ AAATTCATATGATTGCTTTGAAGACAGCTTGGGTCATTGGATGTGCATTTTCCCCTTCTATGAACTTTGTTGCTAGTGGTGGATTAGATAATGTCATATCTTATTTCAATTTAAAGTCTCAGGACGGCACCGCAGAGTTTGTCCGCGAGTTTACTGGTCATAATGGTTACATCGCATGTGTCCGATTCATTGATGATAATCGATTACTGAGTTGTTCTGGTGACAAAACTTGTGCACTGTGGGATATCGAAAAGTCTAAAATCACTACAAGTTTTCGTGGACACTCAAATGATGTTAACGCCATTGCCGTTTCGAAGCAGATGCCAAATTTGTTTGTTTCTGCATCTTCAGACCGCACTTGTCGGTTGGGGGATCT ] [+] EMBL CD135314 [ ATGGTTACATCGCATGTGTCCGATTCATTGATGATAATCGATTACTGAGTTGTTCTGGTGACAAAACTTGTGCACTGTGGGATATCGAAAAGTCTAAAATCACTACAAGTTTTCGTGGACACTCTAATGATGTTAACGCCATTGCCGTTTCGAAGCAGATGCCAAATTTGTTTGTTTCTGCATCTTCAGACCGCACTTGTCGGTTGTGGGATCTTCGGTGCGGCGAAGGTATGCAGTACTTCGAAGGACACCAGCAGGATGTTAATGGTGTGGACTTTTTCCCCGTCAATTCTTATGCTTTCGCCTCTTCTTCCGACGATGGCTCGTGTCATTTGTGGGATCTACGAGCTGATCAGGCAATTGGGGTCTATATTGATGACTTCATT] consensusID : consensus_9712#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [AGCAGAATCAAACAAAACATTCCACGCGTTGACTACATCACTTTCATTTGTACTCGCTACAAATAAATTGTCCCACAAACCCGTTAAAAATGCATTGATCACAGAAAGATCGACGATAGCACCCTGAGAAACAGTTATGTGTACTGGGCCAGCATCCGTATCCCAAATATCTAACTCTCGTTTCGTTGGTTGGGCAATAATAGGGACTGTCTTTGACTTTCTATCAGCAACCGGGCGAGGAACGAAGCAGAAAGACAATTGGAATCCCATGACCCAGTTGCAACACCTATGCCACTATCAGATACTGTTACACAAGAGACCCGGTTTTCGTGGGCGGACATGATTCCAACACGTTCTTCTCGTAGCAGATCCCAGACGTGACAGTTGAAGTCATCGTATCCAGCAAGTAACAGACGACCCGACTTTGAAATTGCCACACTACTACTACCACAGTTAATGAAGTCATCAATATAGGCACCAATTGCC] [-] EMBL CD094906 [AGCAGAATCAAACAAAACATTCCACGCGTTGACTACATCACTTTCATTTGTACTCGCTACAAATAAATTGTCCCACAAACCCGTTAAAAATGCATTGATCACAGAAAGATCGACGATAGCACCCTGAGAAACAGTTATGTGTACTGGGCCAGCATCCGTATCCCAAATATCTAACTCTCGTTTCGTTGGTTGGGCAATAATAGGGACTGTCTTTGACTTTCTATCAGCAACCGGGCGAGGAACGAAGCAGAAAGACAATTGGAATCCCATGACCCAGTTGCAACACCTATGCCACTATCAGATACTGTTACACAAGAGACCCGGTTTTCGTGGGCGGACATGATTCCAACACGTTCTTCTCGTAGCAGATCCCAGACGTGACAGTTGAAGTCATCGTATCCAGCAAGTAACAGACGACCCGACTTTGAAATTGCCACACTACTACTACCACAGTTAATGAAGTCATCAATATAGGCACCAATTGCC] consensusID : consensus_9712#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [ATGAAGAAATATCGGAAGAGGAAAAGGCTTTGGATGCAGAAATACTGAATCTTAAAACTTCAATTACTGATGCACAGAAAGCTGTTGCAGATACAGACTTTTACAAAATGACTGCGAACGTACCTGAACTTGGTAGAATTAAGTTCAAAGTACGTAAACATTTACGAGGTCATCTAGCTAAAGTGACGTCTATCCAATGGGCTTCTGACAACCAGTTACTATTGTCCGCTTCTCAAGATGGAAAATTAATCGTTTGGGATACATTTTCTGGAAAGAAAATTCATATGATTGCTTTGAAGACAGCTTGGGTCATTGGATGTGCATTTTCCCCTTCTATGAACTTTGTTGCTAGGGGTGGATTAAATAATGTCATATCTTATTTCA] [+] EMBL CD188789 [ATGAAGAAATATCGGAAGAGGAAAAGGCTTTGGATGCAGAAATACTGAATCTTAAAACTTCAATTACTGATGCACAGAAAGCTGTTGCAGATACAGACTTTTACAAAATGACTGCGAACGTACCTGAACTTGGTAGAATTAAGTTCAAAGTACGTAAACATTTACGAGGTCATCTAGCTAAAGTGACGTCTATCCAATGGGCTTCTGACAACCAGTTACTATTGTCCGCTTCTCAAGATGGAAAATTAATCGTTTGGGATACATTTTCTGGAAAGAAAATTCATATGATTGCTTTGAAGACAGCTTGGGTCATTGGATGTGCATTTTCCCCTTCTATGAACTTTGTTGCTAGGGGTGGATTAAATAATGTCATATCTTATTTCA] consensusID : consensus_9712#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [GTTAAAATGGTCAGATTCTACATCACGTAAAGTTTAATTTAAGAGATCATTAGAAATAAAAAGAAACGATTCCAAAAGTATCAAAAATTTGAGTAATCACTTCAAGAATTTAGTTGATACATACCTATTTCGCAGTCCATATGAGACAATTGGAATCCCATGACCCAGTTGCAACACCTATGCCACTATCAGATACTGTTACACAAGAGACCCGGTTTTCGTGGGCGGACATGATTCCAACACGTTCTTCTCGTAGCAGATCCCAGACGTGACAGTTGAAGTCATCGTATCCAGCAAGTAACAGACGACCCGACTTTGAAATTGCCACACTACTACTACCACAGTTAATGAAGTCATCAATATAGA] [+] EMBL CD131167 [GTTAAAATGGTCAGATTCTACATCACGTAAAGTTTAATTTAAGAGATCATTAGAAATAAAAAGAAACGATTCCAAAAGTATCAAAAATTTGAGTAATCACTTCAAGAATTTAGTTGATACATACCTATTTCGCAGTCCATATGAGACAATTGGAATCCCATGACCCAGTTGCAACACCTATGCCACTATCAGATACTGTTACACAAGAGACCCGGTTTTCGTGGGCGGACATGATTCCAACACGTTCTTCTCGTAGCAGATCCCAGACGTGACAGTTGAAGTCATCGTATCCAGCAAGTAACAGACGACCCGACTTTGAAATTGCCACACTACTACTACCACAGTTAATGAAGTCATCAATATAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9712#2 ------------------------------------------------------------ consensus_9712#4 ------------------------------------------------------------ consensus_9712#0 TTTTTTTTTTTTTTTTTAATATTCAATAAGTTTTATTTTCTTACAGTGAGGTTAACAAAT 60 consensus_9712#1 ------------------------------------------------------------ consensus_9712#3 ------------------------------------------------------------ consensus_9712#2 ------------------------------------------------------------ consensus_9712#4 ------------------------------------------------------------ consensus_9712#0 TAATTGTATATCATACAAAAAAGTAGTAAGGTTGAATTTTTTACAAAAGACAGTGTTATA 120 consensus_9712#1 ------------------------------------------------------------ consensus_9712#3 ------------------------------------------------------------ consensus_9712#2 ------------------------------------------------------------ consensus_9712#4 ------------------------------------------------------------ consensus_9712#0 TACAATGAAACACTTTTGACCGACATTCACTTAACACTTAACAGTTGGGTATTCCCGAAC 180 consensus_9712#1 ------------------------------------------------------------ consensus_9712#3 ------------------------------------------------------------ consensus_9712#2 ------------------------------------------------------------ consensus_9712#4 ------------------------------------------------------------ consensus_9712#0 CAGCCTGGAGAAAATATGTTAACCCATGCCGTTTTGAGAACATTAGTTGTTTCGACGAAG 240 consensus_9712#1 ------------------------------------------------------------ consensus_9712#3 ------------------------------------------------------------ consensus_9712#2 ------------------------------------------------------------ consensus_9712#4 ------------------------------------------------------------ consensus_9712#0 AATTTTAATCTCAATAAAATCAGTAACTTTCAATCTGTATGAAATAAAATATCACTGCAC 300 consensus_9712#1 ------------------------------------------------------------ consensus_9712#3 ------------------------------------------------------------ consensus_9712#2 ------------------------------------------------------------ consensus_9712#4 ------------------------------------------------------------ consensus_9712#0 AAAATAAAGTCCTCCTAAAGATGTATTTGCACGAGATAAATATTCACATGATCAATTGTC 360 consensus_9712#1 --------------------------------------TATGATTGCATTGCCTTTCTCA 22 consensus_9712#3 ------------------------------------------------------------ consensus_9712#2 ------------------------------------------------------------ consensus_9712#4 ------------------------------------------------------------ consensus_9712#0 GTGAACCACACAAACTAGTTTACTGCCTTTTGCATGGTCTGTAGAACTTTCTGAGCGTGA 420 consensus_9712#1 AAAATACATATGAATGCTTTGAAGACAGCTTGGGTCATTGGATGTGCATTTTCCCCTTCT 82 consensus_9712#3 ------------------------------------------------------------ consensus_9712#2 -----AGCAGAATCAAACAAAACATTCCACGCGTTGACTACATCACTTTCATTTGTACTC 55 consensus_9712#4 ------------------------------------------------------------ consensus_9712#0 GAAACAGCAGAATCAAACAAAACATTCCACGAGTTGACTACATCACTTTCATTTGTACTC 480 consensus_9712#1 ATGAACTTTGTTGCTAGTGGTGGATTAGATAATGTCA-TATCTTATTTCGATTTAAAGTC 141 consensus_9712#3 --------------------------------------------------ATGAAGAAAT 10 consensus_9712#2 GCTACAAATAAATTGTCCCACAAACCCGTTAAAAATGCATTGA-TCACAGAAAGATCGAC 114 consensus_9712#4 ---------------------------GTTAAAA-TGGTCAGA-TTCTACATCACGTAAA 31 consensus_9712#0 GCCACAAATAAATTGTCCCACAAACCCGTTAAAAATGCATTGA-TCACAGAAAGATCGAC 539 consensus_9712#1 TC----AGGACGGCACCGCAGAGTTTGTCCGCGAGTTTACTGG-TCATAATGGTTACATC 196 consensus_9712#3 AT-----CGGAAGAGGAAAAGGCTTTGGATGCAGAAATACTGAATCTTAAAACTTCAATT 65 * * * consensus_9712#2 GATAGCACCCTGAGAAACAGTT-ATGTGTACTGGGCCAGCATCCGTATCCCAAATATCTA 173 consensus_9712#4 GTT--TAATTTAAGAGATCATT-AGAAATAAAAAGAAACGATTCCAA----AAGTATCAA 84 consensus_9712#0 GATAGCACCCTGAGAAACAGTT-ATGTGTACTGGGCCAGCATCCGTATCCCAAATATCTA 598 consensus_9712#1 GCATGTGTCC---GATTCATTG-ATG-ATAATCGATTACTGAGT-TGTTCTGGTGACAAA 250 consensus_9712#3 ACTGATGCACAGAAAGCTGTTGCAGATACAGACTTTTACAAAATGACT----GCGAACGT 121 * * * * * * consensus_9712#2 ACTCTCGTTTCGTTGGTTGGGCAATAATAGGGACTGTCTTTGACTTTCTATCAGCAACCG 233 consensus_9712#4 AAATTTGAGTAATCACTT---CAAGAATTTAGTTGATACATACCTATTTCGCAGT--CCA 139 consensus_9712#0 ACTCTCGTTTCGTTGGTTGGGCAATAATAGGGACTGTCTTTGACTTTCTATCAGCAACCG 658 consensus_9712#1 ACTTGTGCACTGTGGGATATCGAAAAGTCTAAAATCACTACAAGTTTTCGTGGACACTCA 310 consensus_9712#3 ACCTGAACTTGGTAGAAT-----TAAGTTCAAAGTACGTAAACATTTACGAGGTCATCTA 176 * * * * * * * consensus_9712#2 GGCGAGGAACGAAGCAGAAAGACAATTGGAATCCCATGACCCAGTTGCA-ACACCTATGC 292 consensus_9712#4 TATGAG---------------ACAATTGGAATCCCATGACCCAGTTGCA-ACACCTATGC 183 consensus_9712#0 GGCGAGGAAC-----------GAAGCAGAAAGACAGCGAAACAG--GCC-ATTCATTCAC 704 consensus_9712#1 AATGATG--TTAACGCCATTGCCGTTTCGAAGCAGATGCCAAATTTGTTTGTTTCTGCAT 368 consensus_9712#3 GCTAAAG---TGACGTC-TATCCAATGGGCTTCTGACAACCAGTT-ACTATTGTCCGCTT 231 * consensus_9712#2 CACTATCAGATA--CTGTTACAC--AAGAGACCCGGTTTTCGTGGGCGG--ACATGATTC 346 consensus_9712#4 CACTATCAGATA--CTGTTACAC--AAGAGACCCGGTTTTCGTGGGCGG--ACATGATTC 237 consensus_9712#0 TTTTAA-GGATA--TTGTCTCATTTAATGGTCCTGGTTTATATAATTCT--AAGTAGGAT 759 consensus_9712#1 CTTCAGACCGCA--CTTGTCGGTTGGGGGATCTTCGGTGCGGCGAAGGT--ATGCAGTAC 424 consensus_9712#3 CTCAAGATGGAAAATTAATCGTTTGGGATACATTTTCTGGAAAGAAAATTCATATGATTG 291 * * * * * consensus_9712#2 CAACACGTTCTTCTCGTAGCAGATCCCAGACGTGACAGTTGAAGTCATCGTATCCAGCAA 406 consensus_9712#4 CAACACGTTCTTCTCGTAGCAGATCCCAGACGTGACAGTTGAAGTCATCGTATCCAGCAA 297 consensus_9712#0 CC-CGCAGCTTGTTCATCCGTAACCGCATATAACTTTGTCCATTTTGTTGTA--CAAAGA 816 consensus_9712#1 TT-CGAAGGACACCAGCAGGATGTTAATGGTGTGGACTTTTTCCCCGTCAATTCTTATGC 483 consensus_9712#3 CTTTGAAGACAGCT--TGGGTCATTGGATGTGCATTTTCCCCTTCTATGAACTTTGTTGC 349 * consensus_9712#2 GT--AACAGACGACCCGACTTTG-AAATTGCCACACTACTACTACCACAGTTAATGAAGT 463 consensus_9712#4 GT--AACAGACGACCCGACTTTG-AAATTGCCACACTACTACTACCACAGTTAATGAAGT 354 consensus_9712#0 CT--AACAAGTGCAGCGGGGACA-CAAGCATCTAGTAAGCACCCATCGTCCTCGTGACG- 872 consensus_9712#1 TTTCGCCTCTTCTTCCGACGATGGCTCGTGTCATTTGTGGGATCTACGAGCTGATCAGGC 543 consensus_9712#3 TA---GGGGTGGATTAAATAATGTCATATCTTATTTCA---------------------- 384 consensus_9712#2 CATCAATATAGGCACCAATTGCC----- 486 consensus_9712#4 CATCAATATAGA---------------- 366 consensus_9712#0 ---------------------------- consensus_9712#1 AATTGGGGTCTATATTGATGACTTCATT 571 consensus_9712#3 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||