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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9715#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 886 fasta sequence
[TTATAACATTAGATTGAATGAAACTCCCACCGACTAATACATCATTTGTTGGATTCGATACTGTACAATTAATGGAACAAGTCATTGCATCGAAAAGTTGCCATCCACTAGAACAAACTAATAATATACATCGAGGTGTTTGTGGACAACAATCAACTTGTATTATGGTAGATGGACAATTAATAGATCGTGATTCATGTTCATATTTTGCTTCACCTTGTGTTTCTTCACCGTCCAGAGTCCATAATACAGCTAGATTGGAGTATGAAAGACCTAAAACAATTTCATTTCGTTGATTTGGATGTGTAACAACAACAAATGAAGATACCCAATCCGGTTGTGAATTTGAAGCCAAAGTGAACAGAACAGCCAGTGAAGTAGCATGTAATACAACAATATGTGCATATTGACCACAACAAAAAAGTAGACGATAGTCAAGGTAACATGTTTGATGTGATTTGATATATGTATGGCGATAACGTGTGTCCATTTTGAATTCTAAGCATTTGCCGTCATTCCAATTCCAAACAGCCATTTCGCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACC-TTCCTGCAATGCACAGATTGGAGACCAAGGACTTGTG-CCCAGTTAGCATCCACCTTGGGGCACATGAGCAGGAATTTCCTATACTCCATAGAATAATATTCCCATCTGCCGATCCTGTGGCGACACTTTCCCCATCTTCAGACAATAAAATCGAAGTTATTTGATGATCAGGTGGAGTATGTGCCCAAGTGACAAAAGGTATAACAGTATTCCCACTTATTTTGATCATT-CTTTCCCATAAGAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGTCGTAGCGTTATCATTTC]
[+] EMBL CD164073 [TTATAACATTAGATTGAATGAAACTCCCACCGACTAATACATCATTTGTTGGATTCGATACTGTACAATTAATGGAACAAGTCATTGCATCGAAAAGTTGCCATCCACTAGAACAAACTAATAATATACATCGAGGTGTTTGTGGACAACAATCAACTTGTATTATGGTAGATGGACAATTAATAGATCGTGATTCATGTTCATATTTTGCTTCACCTTGTGTTTCTTCACCGTCCAGAGTCCATAATACAGCTAGATTGGAGTATGAAAGACCTAAAACAATTTCATTTCGTTGATTTGGATGTGTAACAACAACAAATGAAGATACCCAATCCGGTTGTGAATTTGAAGCCAAAGTGAACAGAACAGCCAGTGAAGTAGCATGTAATACAACAATATGTGCATATTGACCACAACAAAAAAGTAGACGATAGTCAAGGTAACATGTTTGATGTGATTTGATATATGTATGGCGATAACGTGTGTCCATTTTGAATTCTAAGCGTTTGCCGTCATTCC ATTCCAAACAGCCATTTCGCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACCTTTCCTGC ATGCACAGATTGNAGACCANGGACTTGTGCCCCAG TAGCATCCACCTTGGGGCACATGAGCANGAAT ]
[-] EMBL CD163926 [ AGATCGTGATTCATGTTCATATTATGCTTCACCTTGTGTTTGTTCACCGTCCAGAGTCCATAATACAGCTAGATTGGAGTATGAAAGACCCAAAACAATTTCATTTCGTTGATTTGGATGTGTAACAACAACAAATGAAGATATCCAATCCGGTTGTGAATTTGAAGCCAAAGTGAACAGAACAGCCAGTGAAGTAGCATGTAATACAACAATATGTGCATATTGACCACAACAAAAAAGTAGACGATAGTCAAGGTAACATGTTTGATGTGATTTGATATATGTATGGCGATAACGTGTGTCCATTTTGAATTCTAAGCATTTGCCGTCATTCCAATTCCAAACAGCCATTTCGCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACC TTCCTGCAATGCACGGATTGGAGACCAAGGACTTGTG CCCAGTTAGCATCCACCTTGGGGCACATGAGCAGGATTTT ]
[+] EMBL CD183673 [ TGATGTGATTTGATATATGTATGGCGATAACGTGTGTCCATTTTGAATTCTAAGCATTTGCCGTCATTCCAATTCCAAACAGCCATTTCGCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACC TTCCTGCAATGCACAGATTGGAGACCAAGGACTTGTG CCCAGTTAGCATCCACCTTGGGGCACATGAGCAGGAATTTCCTATACTCCATAGAATAATATTCCCATCTGCCGATCCTGTGGCGACACTTTCCCCATCTTCAGACAATAAAATCGAAGTTATTTGATGATCAGGTGGAGTATGTGCCCAAGTGACAAAAGGTATAACAGTATTCCCACTTATTTTGATCATT CTTTCCCATAAGAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGTCGTAGCGTTATCATTT ]
[-] EMBL CD189769 [ GATGTGATTTGATATATGTATGGCGATAACGTGTGTCCATTTTGAATTCTAAGCATTTGCCGTCATTCCAATTCCAAACAGCCATTTCGCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACC TTCCTGCAATGCACAGATTGGAGACCAAGGACTTGTG CCCAGTTAGCATCCACCTTGGGGCACATGAGCAGGAATTTCCTATACTCCATAGAATAATATTCCCATCTGCCGATCCTGTGGCGACACTTTCCCCATCTTCAGACAATAAAATCGAGGTTATTTGATGATCAGGTGGAGTATGTGCCCAAGTGACAAAAGGTATAACAGTATTCCCACTTATTTTGATCATT CTTTCCCATAAGAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGCCGTAGCGTTATCATTTC]
[-] EMBL CD183561 [ GATGTGATTTGATATATGTATGGCGATAACGTGTGTCCATTTTGAATTCTAAGCATTTGCCGTCATTCCAATTCCAAACAGCCATTTCGCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACC TTCCTGCAATGCACAGATTGGAGACCAAGGACTTGTG CCCAGTTAGCATCCACCTTGGGGCACATGAGCAGGAATTTCCTATACTCCATAGAATAATATTCCCATCTGCCGATCCTGTGGCGACACTTTCCCCATCTTCAGACAATAAAATCGAAGTTATTTGATGATCAGGTGGAGTATGTGCCCAAGTGACAAAAGGTATAACAGTATTCCCACTTATTTTGATCATT CTTTCCCATAAGAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGTCGTAGCGTTATCATTT ]
[-] EMBL CD189776 [ GATGTGATTTGATATATGTATGGCGATAACGTGTGTCCATTTTGAATTCTAAGCATTTGCCGTCATTCCAATTCCAAACAGCCATTTCGCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACC TTCCTGCAATGCACAGATTGGAGACCAAGGACTTGTG CCCAGTTAGCATCCACCTTGGGGCACATGAGCAGGAATTTCCTATACTCCATAGAATAATATTCCCATCTGCCGATCCTGTGGCGACACTTTCCCCATCTTCAGACAATAAAATCGAAGTTATTTGATGATCAGGTGGAGTATGTGCCCAAGTGACAAAAGGTATAACAGTATTCCCACTTATTTTGATCATT CTTTCCCATAAGAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGTCGTAGCGTTATCATTT ]
[-] EMBL CD188551 [ GATGTGATTTGATATATGTATGGCGATAACGTGTGTCCATTTTGAATTCTAAGCATTTGCCGTCATTCCAATTCCAAACAGCCATTTCGCCATTGATTGAATAGCTAAAGAAAAGTTGATTTTTGGTTATGGGAGACC TTCCTGCAATGCACAGATTGGAGACCAAGGACTTGTG CCCAGTTAGCATCCACCTTGGGGCACATGAGCAGGAATTTCCTATACTCCATAGAATAATATTCCCATCTGCCGATCCTGTGGCG ]
[-] EMBL CD183430 [ AGGTATGGCAGTATTCCCACTTATTTTGATCATTACTTTCCCATAAGAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGTCGTAGCGTAATCATTTC]
consensusID : consensus_9715#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 865 fasta sequence
[TAAGGTGTTTATTTGTAGGTCAGCGGGGCTGATGGTCCCAGAATATTTTAAAAAAAACACTGTGAAACCAACTCGCAACTCTATAATTAAAGACTCCCCTAGCGTCACAACTAAAAGTAACACCTATATGGACTATGTGTATTTGAGTAAGACTTAGTTTGTAGTCATCAGTGTGAAATGCTTAACAAACTGGAACCGTCAATGAGACGGTGTACATGAAACTTACAACCCTGGTATAATTACATTTAATACTATGATAAAGCACGATTTACGCTTGATCATACCATTGAAATACGTAGTTGCAACCAATACTTCCATGTCAATACGAGGTGTTTTAAAAGGACTGTCAAAGTAGTGAAAGCTCCCTAAACTAAAACAACCTATCTCGAAAGTTTGTATATCTGTGAGAGCAGGGTCTTGAAACATTGTGAAATTCGCCCTCAATATTATCTACTGACTTTCCGTATTCGTCGGAGCGAAATAGATCAAAGAAATCAAACACTGCAAACAGTAACTTACCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACCTTCCTGNCATGCACAGATTGGAGACCAAGGACTTGTGCCCAGTTAGCATCCACCTTGGGGCACATGAGCAGGAATTTCCTATACTCCATAGAATAATATTCCCATCTGCCGATCCTGTGGCGACACTTTCCCCATCTTCAGACAATAAAATCGAAGTTATTTGATGATCAGGTGGAGTATGTGCCCAAGTGACAAAAGGTATAACAGTATTCCCACTTATTTTGATCATTCTTTCCCATAAGAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGTCGTAGCGTTATCATTT]
[+] EMBL CD094933 [TAAGGTGTTTATTTGTAGGTCAGCGGGGCTGATGGTCCCAGAATATTTTAAAAAAAACACTGTGAAACCAACTCGCAACTCTATAATTAAAGACTCCCCTAGCGTCACAACTAAAAGTAACACCTATATGGACTATGTGTATTTGAGTAAGACTTAGTTTGTAGTCATCAGTGTGAAATGCTTAACAAACTGGAACCGTCAATGAGACGGTGTACATGAAACTTACAACCCTGGTATAATTACATTTAATACTATGATAAAGCACGATTTACGCTTGATCATACCATTGAAATACGTAGTTGCAACCAATACTTCCATGTCAATACGAGGTGTTTTAAAAGGACTGTCAAAGTAGTGAAAGCTCCCTAAACTAAAACAACCTATCTCGAAAGTTTGTATATCTGTGAGAGCAGGGTCTTGAAACATTGTGAAATTCGCCCTCAATATTATCTACTGACTTTCCGTATTCGTCGGAGCGAAATAGATCAAAGAAATCAAACACTGCAAACAGTAACTTACCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACCTTCCTGNCATGCACAGATTGGAGACCAAGGACTTGTGCCCAGTTAGCATCCACCTTGGGGCACATGAGCAGGAA ]
[-] EMBL CD094611 [ TAAAACAACCTATCTCGAAAGTTTGTATATCTGTGAGAGCAGGGTCTTGAAACATTGTGAAGTTCGCCCTCAATATTATCTACTGACTTTCCGTATTCGTCGGAGCGAAATAAATCAAAGAAATCAAACACTGCAAACAGTAACTTACCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACCTTCCTGCAATGCACAGATTGGAGACCAAGGTCTTGTGCCCAGTTAGCATCCACCTTGGGGCACATGAGCAGGAATTTCCTATACTCCATAGAATAATATTCCCATCTGCCGATCCTGTGGCGACACTTTCCCCATCTTCAGACAATAAAATCGAAGTTATTTGATGATCAGGTGGAGTATGTGCCCAAGTGACAAAAGGTATAACAGTATTCCCACTTATTTTGATCATTCTTTCCCATAAGAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGTCGTAGCGTTATCATTT]
[-] EMBL CD183429 [ TCCCCATCTTCAGACAATAGAATCGAAGTTATTTGATGATCAGGTGGAGTATGTGCCCAAGTGACAAAAGGTATAACAGTAGTCCCACTTATTTTGATCAATCTTTCCCATAAGAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGTCGTAGCGTTATCATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9715#0 TTATAACATTAGATTGAATGAAACTCCCACCGACTAATACATCATTTGTTGGATTCGATA 60
consensus_9715#1 -TAAGGTGTTTATTTGTAGGTCAGCGGGGCTGATGGTCCCAGAATATTTTAAAAAAAACA 59
** ** *** * * * * ** ** ** * ** * * *
consensus_9715#0 CTGTACAATTAATGGAACAAGTCATTGCATCGAAAAGTTGCCATCCACTAGAAC--AAAC 118
consensus_9715#1 CTGTGAAACCAACTCG-CAACTCTATA-ATTAAAGACTCCCCTAGCGTCACAACTAAAAG 117
**** ** ** *** ** * ** ** * * ** * * *** ***
consensus_9715#0 TAATAA-TATACAT-CGAGGTGTTTGTGGACAACAATCAACTTGTA-TTATGGTAGATGG 175
consensus_9715#1 TAACACCTATATGGACTATGTGTATTTGAGTAAGACTTAGTTTGTAGTCATCAGTGTGAA 177
*** * **** * * **** * ** ** * * * ***** * ** *
consensus_9715#0 ACAATTAATAGATCGTGATTCATGTTCATATTTTGCTTCACCTTGTGTTTCTTCACCGTC 235
consensus_9715#1 ATGCTTAACAAACTGGAACC---GTCAATGAGACGGTGTACATGAAACTTACAACCCTGG 234
* **** * * * * ** ** * * ** * ** **
consensus_9715#0 CAGAGTCCATAATACAGCTAGATTGGAGTATGAAAGACCTAAAACAATTTCATTTCGTTG 295
consensus_9715#1 TATAATTACATTTAATACTATGATAAAGCACGA-----TTTACGCTTGATCATACCATTG 289
* * * ** *** * ** * ** * * * **** * ***
consensus_9715#0 ATTTGGATGTGTAACAACAACAAATGAAGATAC-CCAATCCG----GTTGTGAATTTGAA 350
consensus_9715#1 A----AATACGTAGTTGCAACCAATACTTCCATGTCAATACGAGGTGTTTTAAAAGGACT 345
* ** *** **** *** * **** ** *** * **
consensus_9715#0 GCCAAAGTGAACAGAACAGCCAGTGAAGTAGCATGTAATACAACAATA-TGTGCATATTG 409
consensus_9715#1 GTCAAAGTAGTGAAAGCTCCC--TAAACTAAAACAACCTATCTCGAAAGTTTGTATATCT 403
* ****** * * * ** * ** ** * ** * * * * ** ****
consensus_9715#0 ACCACAACAAAAAAGTAGACGATAGTCAAGGTAACATGTTTGATGTGATTTGATATATGT 469
consensus_9715#1 GTGAGAGCAGGGTCTTGAAACATTGTGAAATT--CGCCCTCAATATTATCTACTG-ACTT 460
* * ** * * ** ** ** * * * ** * ** * * * *
consensus_9715#0 ATGGCGATAACGTGTGTCCATTTTGAATTCTAAGCATTTGCCGTCATTCCAATTCCAAAC 529
consensus_9715#1 TCCGTATT--CGTCGGAGCGAAATAGATCAAAGAAATCAAAC---------ACTGCAAAC 509
* * *** * * * ** * ** * * * *****
consensus_9715#0 AGCCATTTCGCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACCT 589
consensus_9715#1 AGTAACTTACCCATTGATTGAATAGCTAAAGAAAAATTGATTTTTGGTTATGGGAGACCT 569
** * ** **************************************************
consensus_9715#0 TCCTGCAATGCACAGATTGGAGACCAAGGACTTGTGCCCAGTTAGCATCCACCTTGGGGC 649
consensus_9715#1 TCCTGNCATGCACAGATTGGAGACCAAGGACTTGTGCCCAGTTAGCATCCACCTTGGGGC 629
***** *****************************************************
consensus_9715#0 ACATGAGCAGGAATTTCCTATACTCCATAGAATAATATTCCCATCTGCCGATCCTGTGGC 709
consensus_9715#1 ACATGAGCAGGAATTTCCTATACTCCATAGAATAATATTCCCATCTGCCGATCCTGTGGC 689
************************************************************
consensus_9715#0 GACACTTTCCCCATCTTCAGACAATAAAATCGAAGTTATTTGATGATCAGGTGGAGTATG 769
consensus_9715#1 GACACTTTCCCCATCTTCAGACAATAAAATCGAAGTTATTTGATGATCAGGTGGAGTATG 749
************************************************************
consensus_9715#0 TGCCCAAGTGACAAAAGGTATAACAGTATTCCCACTTATTTTGATCATTCTTTCCCATAA 829
consensus_9715#1 TGCCCAAGTGACAAAAGGTATAACAGTATTCCCACTTATTTTGATCATTCTTTCCCATAA 809
************************************************************
consensus_9715#0 GAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGTCGTAGCGTTATCATTTC 886
consensus_9715#1 GAATAACGAAAAGAAAGATGATCACAAGTAAGATGACAGTCGTAGCGTTATCATTT- 865
********************************************************
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||