These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9716#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 956 fasta sequence [ATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCCATCACAACTGAAGTCCACGCTTCTCAGGCAGAACAGACACTTCTCCATACCTAACACCATCTGACGACAGCATGTCCGAATCCAAACCACTGTCCACATCTCGTCTCTCTGTCATGTCGGACAACAACTCGGATACACTCGTCGAACCCACACCCATCACAACACCATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGCCTCTATGCACTGGGGTCACGTCAGAATCGAATTCCCGCTCGCCGACGTCAAGGCACGTCACCATTCTATGATCAGTGCCCGTCTGGATGCAATAGTGAGCTATACTCAGATAGATCGTGCTCGATGTTGAACACAGTTGTAGACATGTCACATCCCTGCGACGGATGAATCACCCCGTACCAACGACAGATCCAACCTCAGACAACCTTCCCACACCAACATCTACAACTGGCTCCGAAGCACTCGTCGACTGACACACCACATCTCCTGGTCTCGAGGACGTCGACTTCATCGCCAGAGCAATCAAACCTGCAGGCGCCCACAAACCTGTCAACATCATTCTACCAAGACTCTCGAGACGTCCGGAACTAGGATCGCGAACCAACGACT-GCTCACCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCG] [+] EMBL CD071946 [ATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCCATCACAACTGAAGTCCACGCTTCTCAGGCAGAACAGACACTTCTCCATACCTAACACCATCTGACGACAGCATGTCCGAATCCAAACCACTGTCCACATCTCGTCTCTCTGTCATGTCGGACAACAACTCGGATACACTCGTCGAACCCACACCCATCACAACACCATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAACTGTCTCTGATGACACAACACCCTCAGATTCAT ] [+] EMBL CD071940 [ATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCCATCACAACTGAAGTCCACGCTTCTCAGGCAGAACAGACACTTCTCCATACCTGACACCATCTGACGACAGCATGTCCGAATCCAAACCACTGTCCACATCTCGTCTCTCTGTCATGTCGGACAACAACTCGGATACACTCGTCGAACCCACACCCATCACAACACCATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTC ] [+] EMBL CD071875 [ CTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGCCTCTATGCACTGGGGTCACGTCAGAATCGAATTCCCGCTCGCCGACGTCAAGGCACGTCACCATTCTATGATCAGTGCCCGTCTGGATGCAATAGTGAGCTATACTCAGATAGATCGTGCTCGATGTTGAACACAGTTGTAGACATGTCACATCCCTGCGACGGATGAATCACCCCGTACCAACGACAGATCCAACCTCAGACAACCTTCCCACACCAACATCTACAACTGGCTCCGAAGCACTCGTCGACTGACACACCACATCTCCTGGTCTCGAGGACGTCGACTTCATCGCCAGAGCAATCAAACCTGCAGGCGCCCACAAACCTGTCAACATCATTCTACCAAGACTCTCGAGACGTCCGGAACTAGGATCGCGAACCAACGACT GCTCACCCGA ] [-] EMBL CD066192 [ ACAGATCCAACCTCAGACAACCTCCCCACACCAACGTCTACAACTGGCTCCGAAGCACTCGTCGACTGACACACCACATCTCCTGGTCTCGAGGACGTCGACTTCATCGCCAGAGCAATCAAACCTGCAGGCGCCAACAAACCTGTCAACATCATTCTACCAAGACTCTCGAGACGTCCGGAACTAGGATCGCGAACCAACGACTCGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCG] consensusID : consensus_9716#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 598 fasta sequence [AGATACACCGTAATCAGAAATTGTCTCTCTGTCATGTCGGACAACAACTCGGATACACCCGTCGAACCCACACCCATCACAACACCATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGCCTCTATGCACTGGGGTCACGTCACAATCGAATTCCCGCTCGCCGACGTTGAAGGCCCGTCGTCGACATTCTATGATTCAGTGCCCATCTGGATGCGAATAGTGAGCTCAGTTCTACTATATCCGTGCTCGATTGTTTAACACACTTGTGCCTGGTCCACATCCCTGCACGATGAATCACCCGTACCAACGACAGATCCAACCTCAGACAACCTTCCCACACCAACATCTACAACTGGCTCCGAAGCACTCGTCGACTGACACACCACATCTCCTGGTCTCGAGGACGTCGACTTCATCGCCAGAGCAATCAAACCTGCAGGCGCCAACAAACCTGTCAACATCATTCTACCAAGACTCTCGAGACGTCCGGAACT] [+] EMBL CD071975 [AGATACACCGTAATCAGAAATTGTCTCTCTGTCATGTCGGACAACAACTCGGATACACCCGTCGAACCCACACCCATCACAACACCATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCAT ] [+] EMBL CD071880 [ CTTCACATCAACATCGTCCATGTCCACACCAGATATACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGCCTCTATGCACTGGGGTCACGTCACAATCGAATTCCCGCTCGCCGACGTTGAAGGCCCGTCGTCGACATTCTATGATTCAGTGCCCATCTGGATGCGAATAGTGAGCTCAGTTCTACTATATCCGTGCTCGATTGTTTAACACACTTGTGCCTGGTCCACATCCCTGCACGATGAATCACCCGTACCAACGACAGATCCAACCTCAGACAACCTTCCCACACCAACATCTACAACTGGCTCCGAAGCACTCGTCGACTGACACACCACATCTCCTGGTCTCGAGGACGTCGACTTCATCGCCAGAGCAATCAAACCTGCAGGCGCCAACAAACCTGTCAACATCATTCTACCAAGACTCTCGAGACGTCCGGAACT] consensusID : consensus_9716#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 446 fasta sequence [ATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGCCTCTATGCACTGGGGTCACGTCACGATCGAAACTCATCTCACCACGTTCAATCACTCTCACATCTGTCATGTCGGACAACAACTCGGATACACTCGTCGAACCCACACCCATCACAACACCATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGC] [-] EMBL CD084814 [ATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGCCTCTATGCACTGGGGTCACGTCACGATCGAAACTCATCTCACCACGTTCAATCACTCTCACATCTGTCATGTCGGACAACAACTCGGATACACTCGTCGAACCCACACCCATCACAACACCATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGC] [-] EMBL CD084898 [ TCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGCCTCTATGCACTGGGGTCACGTCACGATCGAAACTCATCTCACCACGTTCAATCACTCTCACATCTGTCATGTCGGACAACAACTCGGATACACTCGTCGAA CCACACCCATCACAACGCCATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGC] consensusID : consensus_9716#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence [CGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTGTCTGTGTCCGATAGTAGTTGTGCCAGTGTGTCAGCGAGGACTTGGACGGCCGACTCGGACTGTCCGTGTCAGCTTCAAATATGCCGTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTGGGTGTGTTCGATAG] [+] EMBL CD166552 [CGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTGTCTGTGTCCGATAGTAGTTGTGCCAGTGTGTCAGCGAGGACTTGGACGGCCGACTCGGACTGTCCGTGTCAGCTTCAAATATGCCGTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTGGGTGTGTTCGATAG] consensusID : consensus_9716#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 131 fasta sequence [GGTCACGTCACGATCGAAACTCATCTCACCACGTTCAATCACTCTCACATCTGTCATCATCAAGTCGGATACACTCGTCGAACCCATACCCATCACAAACACCATCTCTGCTCGACGACAAAACACACCTG] [+] EMBL CD142786 [GGTCACGTCACGATCGAAACTCATCTCACCACGTTCAATCACTCTCACATCTGTCATCATCAAGTCGGATACACTCGTCGAACCCATACCCATCACAAACACCATCTCTGCTCGACGACAAAACACACCTG] consensusID : consensus_9716#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 107 fasta sequence [TCAACAAAATGGGACTGCACAGGAACCNGGGGGGNTCTGAAGATCGGCTACAAAGAAATTGTCAAAGAAGTATCCGGCTATATCAAAAAAGTTGGTTACAATCCCGC] [+] EMBL SMRAP140 [TCAACAAAATGGGACTGCACAGGAACCNGGGGGGNTCTGAAGATCGGCTACAAAGAAATTGTCAAAGAAGTATCCGGCTATATCAAAAAAGTTGGTTACAATCCCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9716#0 ATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCCATCACAACTGAA 60 consensus_9716#1 ------------------------------------------------------------ consensus_9716#2 ------------------------------------------------------------ consensus_9716#4 ------------------------------------------------------------ consensus_9716#5 ------------------------------------------------------------ consensus_9716#3 ------------------------------------------------------------ consensus_9716#0 GTCCACGCTTCTCAGGCAGAACAGACACTTCTCCATACCTAACACCATCTGACGACAGCA 120 consensus_9716#1 ------------------------------------------------------------ consensus_9716#2 ------------------------------------------------------------ consensus_9716#4 ------------------------------------------------------------ consensus_9716#5 ------------------------------------------------------------ consensus_9716#3 ------------------------------------------------------------ consensus_9716#0 TGTCCGAATCCAAACCACTGTCCACATCTCGTCTCTCTGTCATGTCGGACAACAACTCGG 180 consensus_9716#1 -------AGATACACCGTAATC-AGAAATTGTCTCTCTGTCATGTCGGACAACAACTCGG 52 consensus_9716#2 --------------------------------------------ATCCACACCAGATACA 16 consensus_9716#4 ------------------------------------------------------------ consensus_9716#5 ------------------------------------------------------------ consensus_9716#3 ------------------------------------------------------------ consensus_9716#0 ATACACTCGTCGAAC-CCACACCCATCACAACACCATCTCTGCTCGACGACAAAACACCC 239 consensus_9716#1 ATACACCCGTCGAAC-CCACACCCATCACAACACCATCTCTGCTCGACGACAAAACACCC 111 consensus_9716#2 CCGTAATCAGAAATTGTCTCTGATGACACAACACCATCTCTGCTCGACGACAAAACACCC 76 consensus_9716#4 ------------------------------------------------------------ consensus_9716#5 ------------------------------------------------------------ consensus_9716#3 -------CGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTG 53 consensus_9716#0 TCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACA 299 consensus_9716#1 TCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACA 171 consensus_9716#2 TCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACA 136 consensus_9716#4 ------------------------------------------------------------ consensus_9716#5 ------------------------------------------------------------ consensus_9716#3 CAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCG 113 consensus_9716#0 CCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGCCTCTATGC 359 consensus_9716#1 CCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGCCTCTATGC 231 consensus_9716#2 CCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGCCTCTATGC 196 consensus_9716#4 ------------------------------------------------------------ consensus_9716#5 -----------------------------------------------------TCAACAA 7 consensus_9716#3 ATTCAACCTGTTCTACCACTTCACTGTCTGTGTCCGATAGTAGTTGTGCCAGTGTGTCAG 173 consensus_9716#0 ACTGGGGTCACGTCAGAATCGAATTCCCGCTCGCCGACGTC-AAGGCACGTCACC---AT 415 consensus_9716#1 ACTGGGGTCACGTCACAATCGAATTCCCGCTCGCCGACGTTGAAGGCCCGTCGTCGACAT 291 consensus_9716#2 ACTGGGGTCACGTCACGATCGAAACTCATCTCACC-ACGTTCAATCACTCTCACA----- 250 consensus_9716#4 -----GGTCACGTCACGATCGAAACTCATCTCACC-ACGTTCAATCACTCTCACA----- 49 consensus_9716#5 AATGGGACTGCACAGGAACCNGGGGGGNTCTG----------AAGATCGGCTACAAAGAA 57 consensus_9716#3 CGAGGACTTGGACGGCCGACTCGGACTGTCCGTGTCAGCTTCAAATATGCCGTCACCAAC 233 * * ** consensus_9716#0 TCTATGAT---CAGTGCCCGTCTGGATGC-AATAGTGAGCTA--TACTCAGATAGATC-G 468 consensus_9716#1 TCTATGATT--CAGTGCCCATCTGGATGCGAATAGTGAGCTC--AGTTCTACTATATCCG 347 consensus_9716#2 TCTGTCATGTCGGACAACAACTCGGATACACTCGTCGAACCC--ACACCCATCACAA--- 305 consensus_9716#4 TCTGTCAT------CATCAAGTCGGATACACTCGTCGAACCC--ATACCCATCACAAA-- 99 consensus_9716#5 ATTGTCAAAG-AAGTATCCGGCTATATCAAAAAAGTTGGTTA--CAATCCCGC------- 107 consensus_9716#3 TTCACCATATTCCGCCTCCATCT-CACCGACACGCTCAACCAATCGTTCCCGTTCCGGTT 292 * * * * consensus_9716#0 TGCTCGAT-GTTGAACACAGTTGTAGACATGTCACATCCCTGCGACGGATGAATCACCCC 527 consensus_9716#1 TGCTCGATTGTTTAACACACTTGTGCCTGGTCCACATCCCTGCAC--GATGAATCACCC- 404 consensus_9716#2 --CACCAT--CTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTC 361 consensus_9716#4 --CACCAT--CTCTGCTCGACGACAAAACACACCTG------------------------ 131 consensus_9716#5 ------------------------------------------------------------ consensus_9716#3 GTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACAC 352 consensus_9716#0 GTACCAACGACAGATCCAACCTCAGACAACCTTCCCACACCAACATCTACAACTGGCTCC 587 consensus_9716#1 GTACCAACGACAGATCCAACCTCAGACAACCTTCCCACACCAACATCTACAACTGGCTCC 464 consensus_9716#2 ACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGAC 421 consensus_9716#4 ------------------------------------------------------------ consensus_9716#5 ------------------------------------------------------------ consensus_9716#3 GTTCCGATTCAACCTGTTCTACCACTTCACTGGGTGTGTTCGATAG-------------- 398 consensus_9716#0 GAAGCACTCGTCGACTGACACACCACATCTCCTGGTCTCGAGGACGTCGACTTCATCGCC 647 consensus_9716#1 GAAGCACTCGTCGACTGACACACCACATCTCCTGGTCTCGAGGACGTCGACTTCATCGCC 524 consensus_9716#2 ACAACACCCTCAGATTCAT-CACCGC---------------------------------- 446 consensus_9716#4 ------------------------------------------------------------ consensus_9716#5 ------------------------------------------------------------ consensus_9716#3 ------------------------------------------------------------ consensus_9716#0 AGAGCAATCAAACCTGCAGGCGCCCACAAACCTGTCAACATCATTCTACCAAGACTCTCG 707 consensus_9716#1 AGAGCAATCAAACCTGCAGGCGCCAACAAACCTGTCAACATCATTCTACCAAGACTCTCG 584 consensus_9716#2 ------------------------------------------------------------ consensus_9716#4 ------------------------------------------------------------ consensus_9716#5 ------------------------------------------------------------ consensus_9716#3 ------------------------------------------------------------ consensus_9716#0 AGACGTCCGGAACTAGGATCGCGAACCAACGACTGCTCACCCGACTTGATGATGACAGAT 767 consensus_9716#1 AGACGTCCGGAACT---------------------------------------------- 598 consensus_9716#2 ------------------------------------------------------------ consensus_9716#4 ------------------------------------------------------------ consensus_9716#5 ------------------------------------------------------------ consensus_9716#3 ------------------------------------------------------------ consensus_9716#0 GTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGA 827 consensus_9716#1 ------------------------------------------------------------ consensus_9716#2 ------------------------------------------------------------ consensus_9716#4 ------------------------------------------------------------ consensus_9716#5 ------------------------------------------------------------ consensus_9716#3 ------------------------------------------------------------ consensus_9716#0 GGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCT 887 consensus_9716#1 ------------------------------------------------------------ consensus_9716#2 ------------------------------------------------------------ consensus_9716#4 ------------------------------------------------------------ consensus_9716#5 ------------------------------------------------------------ consensus_9716#3 ------------------------------------------------------------ consensus_9716#0 GGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTT 947 consensus_9716#1 ------------------------------------------------------------ consensus_9716#2 ------------------------------------------------------------ consensus_9716#4 ------------------------------------------------------------ consensus_9716#5 ------------------------------------------------------------ consensus_9716#3 ------------------------------------------------------------ consensus_9716#0 TTGTCGTCG 956 consensus_9716#1 --------- consensus_9716#2 --------- consensus_9716#4 --------- consensus_9716#5 --------- consensus_9716#3 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||