|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9719#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1000 fasta sequence
[TCCCGGGACGGGCTGGCATCAATTTCTCATCTACGTTGCAGTAAAGTGATGAACAGCAGGTTTGGGCGCAAGAAGACTAAAAATCCCCCCTATTTTTCTCATGAATTCATTATTACAAATCATGGGGACATTGTCAGTGTTTTAGCGATGATAATCATCGTTGGTTTGCTGCACAAGGGAACCCATGTTTTGTCTTCATCTTTCATATTCATCCAGTACAATAACACCGACGAAAACCAAGAAAATGCCTTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTTTTTTACACTCTTATTTGTATCGTTTCCCATGCTGTACTTCAAGAGTATCTCTTTGACAAAGTGACTCGAAAGTTGTGTTTGACAAAGGTTCGGCTAGCTAAATTCAACGAATCTGCCCACCTTGCATGCTTTTATGCTTTGTCCACAGTTTGGGCTGTTTACAGTATTATTAACGAAGGTTTTATAGAGAATTTAAACAGTTTGTGGGATAATTATCCGCAGAGATGGCTGCCATTTTGGATCAAATTATTTTTCATCACTCAAATTTGCTACTGGCTTCATGACTATCCAGAGCTTTATTTTCAGCGTGTTAAGAATGAACTCATACCTGCACGACTGTTCCATGCAACATTATATCTTCTTAGCATATCTTTGGCATATGTTGGAGGATTAACTAAATTATGTATGGTCGTTCTTGTTCTTCACTACGGTACTGACTTCTTCTTGCACGTTTCTCGGGCGTTGCACCTTGCGGAGTACAAGTTTGCATCCATTGGTTTTACCATATGGAATTTGGCTTTTATACCAGTTCGAATGGCATGCGTAATCCTTGGTTTTCTCACTTTTCATCATGGTTTAGGAAAGTATTCTGTAACGTTGGTGCAAATTACCGATGGAAATTTCAATACTCCATCCATAAGAATTGCTGCAATGCTACTTTTCTTCACTACACAAGCTTTAATGGTATGGAATTTCATAACTTTCCATC]
[+] EMBL CD061086 [TCCCGGGACGGGCTGGCATCAATTTCTCATCTACGTTGCAGTAAAGTGATGAACAGCAGGTTTGGGCGCAAGAAGACTAAAAATCCCCCCTATTTTTCTCATGAATTCATTATTACAAATCATGGGGACATTGTCAGTGTTTTAGCGATGATAATCATCGTTGGTTTGCTGCACAAGGGAACCCATGTTTTGTCTTCATCTTTCATATTCATCCAGTACAATAACACCGACGAAAACCAAGAAAATGCCTTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTTTTTTACACTCTTATTTGTATCGTTTCCCATGCTGTACTTCAAGAGTATCTCTTTGACAAAGTGACTCG ]
[-] EMBL CD098090 [ CATCAATTTCTCATCTACGTTGCAGTAAAGTGATGAACAGCAGGTTTGGGCGCAAGAAGACTAAAAATCCCCCCTATTTTTCTCGTGAATTCATTATTACAAATCATGGGGACATTGTCAGTGTTTTAGCGATGATAATCATCGTTGGTTTGCTGCACAAGGGAGCCCATGTTTTGTCTTCATCTTTCATATTCATCCAGTACAATAACACCGACGAAAACCAAGAAAATGCCTTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTTTTTTACACTCTTATTTGTATCGTTTCCCATGCTGTACTTCAAGAGTATCTCTTTGACAAAGTGACTCGAAAGTTGTGTTTGACAAAGGTTCGGCTAGCTAAATTCAACGAATCTGCCCACCTTGCATGCTTTTATG ]
[+] EMBL CD097958 [ aCATCAATTTCTCATCTACGTTGCAGTAAAGTGATGAACAGCAGGTTTGGGCGCAAGAAGACTAAAAATCCCCCCTATTTTTCTCATGAATTCATTATTACAAATCATGGGGACATTGTCAGTGTTTTAGCGATGATAATCATCGTTGGTTTGCTGCACAAGGGAACCCATGTTTTGTCTTCATCTTTCATATTCATCCAGTACAATAACACCGACGAAAACCAAGAAAATGCCTTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTTTTTTACACTCTTATTTGTATCGTTTCCCATGCTGTACTTCAAGAGTATCTCTTTGACAAAGTGACTCGAAAGTTGTGTTTGACAAAGGTTCGGCTAGCTAAATTCAACGAATCTGCCCACCTTGCATGCTTTTAT ]
[+] EMBL AI975415 [ GATGAACAGCAGGTTTGGGCGCAAGAAGACTAAAAATCCCCCCTATTTTTCTCATGAATTCATTATTACAAATCATGGGGACATTGTCAGTGTTTTAGCGATGATAATCATCGTTGGTTTGCTGCACAAGGGAACCCATGTTTTGTCTTCATCTTTCATATTCATCCAGTACAATAACACCGACGAAAACCAAGAAAATGCCTTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTTTTTTACACTCTTATTTGTATCGTTTCCCATGCTGTACTTCAAGAGTATCTCTTTGACAAAGTGACTCGAAAGTTGTGTTTGACAAAGGTTCGGCTAGCTAAATTCAACGAATCTGCCCACCTTGCATGCTTTTATGCTTTGTCCACAGTTTGGGCTGTTTACAGTATTATTAACGAAGGTTTTATAGAGAATTTAAACAGTTTGTGGGATAATTATCCGCAGAGATGGCTGCCAATTTG ]
[+] EMBL AI067870 [ AATCCCCCCTATTTTTCTCATGAATTCATTATTACAAATCATGGGGACATTGTCAGTGTTTTAGCGATGATAATCATCGTTGGTTTGCTGCACAAGGGAACCCATGTTTTGTCTTCATCTTTCATATTCATCCAGTACAATAACACCGACGAAAACCAAGAAAATGCCTTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTTTTTTACACTCTTATTTGTATCGTTTCCCATGCTGTACTTCAAGAGTATCTCTTTGACAAAGTGACTCGAAAGTTGTGTTTGACAAAGGTTCGGCTAGCTAAATTCAACGAATCTGCCCACCTTGCATGCTTTTATGCTTTGTCCACAGTTTGGGCTGTTTACAGTATTATTAACGAAGGTTTTATAGAGAATTTAAACAGTTTGTGGGATAATTATCCGCAGAGATGGCTGCCATTTTGGATCAAATTATTTTTCATCACTCAAATTTGCTACTGGCTTCATGACTATCCAGAGCTTTATTTTCAGCGTGTTAAGAATGAACTCATACCTGCACGACTGTTCCATGCAACATTATATCTTCTTAGCATATCTTTGGCATATGTTGGAGGATTAACTAAATTATGTATGGTCGTTCTTGTTCTTCACTACGGTACTGACTTCTTCTTGCACGTTTCTCGGGCGTTGCACCTTGCGGAGT ]
[-] EMBL CD183930 [ TTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTTTTTTACACTCTTATNTGTATCGTTTCCCATGCTGTACTTCAAGAGTATCTCTTTGACAAAGTGACTCGAAAGTTGTGTTTGACAAAGGTTCGGCTAGCTAAATTCAACGAATCTGCCCACCTTGCATGCTTTTATGCTTTGTCCACAGTTTGGGCTGTTTACAGTATTATTAACGAAGGTTTTATAGAGAATTTAAACAGTTTGTGGGATAATTATCCGCAGAGATGGCTGCCATTTTGGATCAAATTATTTTTCATCACTCAAATTTGCTACTGGCTTCATGACTATCCAGAGCTTTATTTTCAGCGTGTTAAGAATGAACTCATACCTGCACGACTGTTCCATGCAACATTATATCTTCTTAGCATATCTTTGGCATATGTTGGAGGATTAACTAAATTATGTATGGTCGTTCTTGTTCTTCACTACGGTACTGACTTCTTCTTGCACGTTTCTCGGGCGTTGCACCTTGCGGAGTACAAGTTTGCATCCATTGGTTTTACCA ]
[+] EMBL BF936340 [ ATCTCTTTGACAAAGTGACTCGAAAGTTGTGTTTGACAAAGGTTCGGCTAGCTAAATTCAACGAATCTGCCCACCTTGCATGCTTTTATGCTTTGTCCACAGTTTGGGCTGTTTACAGTATTATTAACGAAGGTTTTATAGAGAATTTAAACAGTCTGAGGGATAATTATCCGCAGAGATGGCTGCCATTTTGGATCAAATTATTTCTCATCACTCAAATTTGCTACTGGCTTCATGACTATTCAAAGCTTTATTTTCAACGTGTTAAGAATGAACTCATACCTGCACGACTGTTCCATGCAACATTATATCTTCTTAGCATATCTTTGGCATATGTTGGAGGATTAACT ]
[+] EMBL CD164919 [ ATGGCTGCCATTTTGGATCAAATTATTTTTCATCACTCAAATTTGCTACTGGCTTCATGACTATCCAGAGCTTTATTTTCAGCGTGTTAAGAATGAACTCATACCTGCACGACTGTTCCATGCAACATTATATCTTCTTAGCATATCTTTGGCATATGTTGGAGGATTAACTAAATTATGTATGGTCGTTCTTGTTCTTCACTACGGTACTGACTTCTTCTTGCACGTTTCTCGGGCGCTG ]
[-] EMBL CD089893 [ TGAACTCATACCTGCACGACTGTTCCATGCAACATTATATCTTCTTAGCATATCTCTGGCATATGTTGGAGGATTAACTAAATTATGTATGGTCGTTCTTGTTCTTCACTACGGTACTGACTTCTTCTTGCACGTTTCTCGGGCGTTGCACCTTGCGGAGTACAAGTTTGCATCCATTGGTTTTACCATATGGAATTTGGCTTTTATACCAGTTCGAATGGCATGCGTAATCCTTGGTTTTCTCACTTTTCATCATGGTTTAGGAAAGTATTCTGTAACGTTGGTGCAAATTACCGATGGAAATTTCAATACTCCATCCATAAGAATTGCTGCAATGCTACTTTTCTTCACTACACAAGCTTTAATGGTATGGAATTTCATAACTTTCCATC]
consensusID : consensus_9719#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence
[ATAATTATCCGCAGAGATGGCTGCCATTTTGGATCAAATTATTTTTCATCACTCAAGTAAGATATTTTATCAACTATTACTTCCAGATTTGCTACTGGCTTCATGACTATCCAGAGCTTTATTTTCAGCGTGTTAAGAATGAACTCATACCTGCACGACTGTTCCATGCAACATTATATCTTCTTAGCATATCTTTGGCATATGTTGGAGGATTAACTAAATTATGTATGGTCGTTCTTGTTCTTTACTACGGTACTGACTTCTTCTTGCACGTTTCTCGGGCGTTGCACCTTGCGGAGTACAAGTTTGCATCCATTGGTTTTACCATATGGAATTTGGCTTTTATACCAGTACGAATGGCATGC]
[+] EMBL CD133089 [ATAATTATCCGCAGAGATGGCTGCCATTTTGGATCAAATTATTTTTCATCACTCAAGTAAGATATTTTATCAACTATTACTTCCAGATTTGCTACTGGCTTCATGACTATCCAGAGCTTTATTTTCAGCGTGTTAAGAATGAACTCATACCTGCACGACTGTTCCATGCAACATTATATCTTCTTAGCATATCTTTGGCATATGTTGGAGGATTAACTAAATTATGTATGGTCGTTCTTGTTCTTTACTACGGTACTGACTTCTTCTTGCACGTTTCTCGGGCGTTGCACCTTGCGGAGTACAAGTTTGCATCCATTGGTTTTACCATATGGAATTTGGCTTTTATACCAGTACGAATGGCATGC]
consensusID : consensus_9719#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence
[GCGGCCACGATTCGGTCCGAGGTGATGAACAGCAGGTTTGGGCGCAAGAAGACTAAAAATCCCCCCTATTTTTCTCATGAATTCATTATTACAAATCATGGGGACATTGTCAGTGTTTTAGCGATGATAATCATCGTTGGTTTGCTGCACAAGGGAACCCATGTTTTGTCTTCATCTTTCATATTCATCCAGTACAATAACACCGACGAAAACCAAGATAATGCCTTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTTTCTTACACTCTTATNTGTATCGTTTCCCATGCTGT]
[+] EMBL CD077711 [GCGGCCACGATTCGGTCCGAGGTGATGAACAGCAGGTTTGGGCGCAAGAAGACTAAAAATCCCCCCTATTTTTCTCATGAATTCATTATTACAAATCATGGGGACATTGTCAGTGTTTTAGCGATGATAATCATCGTTGGTTTGCTGCACAAGGGAACCCATGTTTTGTCTTCATCTTTCATATTCATCCAGTACAATAACACCGACGAAAACCAAGATAATGCCTTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTTTCTTACACTCTTATNTGTATCGTTTCCCATGCTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9719#0 TCCCGGGACGGGCTGGCATCAATTTCTCATCTACGTTGC-AGT--AAAGTGATGAACAGC 57
consensus_9719#2 --------------------------GCGGCCACGATTC-GGTCCGAGGTGATGAACAGC 33
consensus_9719#1 ----------ATAATTATCCGCAGAGATGGCTGCCATTTTGGATCAAATTATTTTTCATC 50
* * * * * * * ** *
consensus_9719#0 AGGTTTGGGCGCAAGAAGACTAAAAATCCCCCCTATTTTTCTCATGAATTCATTATTACA 117
consensus_9719#2 AGGTTTGGGCGCAAGAAGACTAAAAATCCCCCCTATTTTTCTCATGAATTCATTATTACA 93
consensus_9719#1 ACTCAAGTAAGATATTTTATCAACTATTACTTCCAGATTTGCTACTGGCT--TCATGACT 108
* * * * * ** ** * * * *** * * * ** **
consensus_9719#0 AATCATGGGGACATTGTCAGTGTTTTAGCGATGATAATCATCGTTGGTTTGCTGCACAAG 177
consensus_9719#2 AATCATGGGGACATTGTCAGTGTTTTAGCGATGATAATCATCGTTGGTTTGCTGCACAAG 153
consensus_9719#1 ATCCAGAGCTTTATTTTCAGCGTGTTAAGAATGA-ACTCATACCTGCACGACTGTTCCAT 167
* ** * *** **** ** *** **** * **** ** *** * *
consensus_9719#0 GGAACCCATGTTTTGTCTTCATCTTTCATATTCATCCAGTACAATAACACCGACGAAAAC 237
consensus_9719#2 GGAACCCATGTTTTGTCTTCATCTTTCATATTCATCCAGTACAATAACACCGACGAAAAC 213
consensus_9719#1 GCAAC----ATTATATCTTCTTAGCATATCTTTGGCATATGTTGGAGGATTAACTAAATT 223
* *** ** * ***** * ** ** * * * * ** ***
consensus_9719#0 CAAGAAAATG--CCTTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTT---T 292
consensus_9719#2 CAAGATAATG--CCTTATTATACAGCCCAGGAGCAAAAGATTTATGCGTAATATTT---T 268
consensus_9719#1 ATGTATGGTCGTTCTTGTTCTTTACTACGGTACTGACTTCTTCTTGCACGTTTCTCGGGC 283
* * *** ** * * * * * * ** *** * *
consensus_9719#0 TTTACACTCTTATTTGTATCGTTTCCCATGCTGTACTTCAAGAGTATCTCTTTGACAAAG 352
consensus_9719#2 CTTACACTCTTATNTGTATCGTTTCCCATGCTGT-------------------------- 302
consensus_9719#1 GTTGCACCTTGCGGAGTACAAGTTTGCATCCATTGGTTTTACCATATGGAATTTGGCTTT 343
** *** * *** ** *** * *
consensus_9719#0 TGACTCGAAAGTTGTGTTTGACAAAGGTTCGGCTAGCTAAATTCAACGAATCTGCCCACC 412
consensus_9719#2 ------------------------------------------------------------
consensus_9719#1 TATACCAGTACGAATGGCATGC-------------------------------------- 365
consensus_9719#0 TTGCATGCTTTTATGCTTTGTCCACAGTTTGGGCTGTTTACAGTATTATTAACGAAGGTT 472
consensus_9719#2 ------------------------------------------------------------
consensus_9719#1 ------------------------------------------------------------
consensus_9719#0 TTATAGAGAATTTAAACAGTTTGTGGGATAATTATCCGCAGAGATGGCTGCCATTTTGGA 532
consensus_9719#2 ------------------------------------------------------------
consensus_9719#1 ------------------------------------------------------------
consensus_9719#0 TCAAATTATTTTTCATCACTCAAATTTGCTACTGGCTTCATGACTATCCAGAGCTTTATT 592
consensus_9719#2 ------------------------------------------------------------
consensus_9719#1 ------------------------------------------------------------
consensus_9719#0 TTCAGCGTGTTAAGAATGAACTCATACCTGCACGACTGTTCCATGCAACATTATATCTTC 652
consensus_9719#2 ------------------------------------------------------------
consensus_9719#1 ------------------------------------------------------------
consensus_9719#0 TTAGCATATCTTTGGCATATGTTGGAGGATTAACTAAATTATGTATGGTCGTTCTTGTTC 712
consensus_9719#2 ------------------------------------------------------------
consensus_9719#1 ------------------------------------------------------------
consensus_9719#0 TTCACTACGGTACTGACTTCTTCTTGCACGTTTCTCGGGCGTTGCACCTTGCGGAGTACA 772
consensus_9719#2 ------------------------------------------------------------
consensus_9719#1 ------------------------------------------------------------
consensus_9719#0 AGTTTGCATCCATTGGTTTTACCATATGGAATTTGGCTTTTATACCAGTTCGAATGGCAT 832
consensus_9719#2 ------------------------------------------------------------
consensus_9719#1 ------------------------------------------------------------
consensus_9719#0 GCGTAATCCTTGGTTTTCTCACTTTTCATCATGGTTTAGGAAAGTATTCTGTAACGTTGG 892
consensus_9719#2 ------------------------------------------------------------
consensus_9719#1 ------------------------------------------------------------
consensus_9719#0 TGCAAATTACCGATGGAAATTTCAATACTCCATCCATAAGAATTGCTGCAATGCTACTTT 952
consensus_9719#2 ------------------------------------------------------------
consensus_9719#1 ------------------------------------------------------------
consensus_9719#0 TCTTCACTACACAAGCTTTAATGGTATGGAATTTCATAACTTTCCATC 1000
consensus_9719#2 ------------------------------------------------
consensus_9719#1 ------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||