These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9722#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 322 fasta sequence [TCTA-TGCACACACATTGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGGTATGTTTGGTTTCCGTGCACTTACCAAGCGTATTTCTGTGCGTGAAGAAATGAAGGGTAAATCAGCACTTTATGGCAAAAGAAAAGT] [+] EMBL CD065694 [TCTA TGCACACA TGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGGTATGTTTGGTTTCCGTGCACTTACCAAGCGTATTTCTGTGCGTGAAGAAATGAAGGGTAAATCAGCACTTTA ] [+] EMBL CD167393 [ CTA TGCACACACATTGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGCAGAAATCTGATATCTGTA TGGCACCCACTTTTACTGCCTATATAATTTACTGGGATTATCAAGCTTGCGAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGGTATGTTTGGTTTCCGTGCACTTACCAAGCGTATTTCTGTGCGTGAAGAAATGAAGGGTAAATCAGCACTTTATGGCAAAAGAAAAGT] [-] EMBL CD128311 [ CTATTGCACACACATTGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGGTATGTTTGGTTTCCGTGCACTTACCAAGCGTATTTCTGTGCGTGAAGAAATGAAGGGTAAATCAGCACTTTAT ] [+] EMBL CD167209 [ CTA TGCACACACATTGTTCTCCGTAA TTTTCTTAGTAAATGAAAGTTTCCTCAGTTTTAATGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGGTATGTTTGGTTTCCGTGCACTTACCAAGCGTATTTCTGTGCGTGAAGAAATGAAGGGTAAATCAGCACTTTA ] consensusID : consensus_9722#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 287 fasta sequence [CTATTGCACACACATTGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGAAATGAAGGGTAAATCAGCACTTTGGCAAAAGAAAAGTTCCGTGAGCCGTCGG] [-] EMBL CD167234 [CTATTGCACACACATTGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGAAATGAAGGGTAAATCAGCACTATGGCAAAAGAAAAGTTCCGTGAGCCGTCGG] [-] EMBL CD167426 [CTATTGCACACACATTGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGAAATGAAGGGTAAATCAGCACTTTa ] [-] EMBL CD065680 [CTATTGCACACACATTGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAATTTACTGGGATTATCAAGCCTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGAAATGAAGGGTAAATCAGC CTTat ] consensusID : consensus_9722#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence [CTATTGCACACACATTGTTCTTCTTTTAAAGACAGCTCGAAGAAATCTGATATCTGTATTTGCACCCGTTTTTACTGCTTATATAATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGGAACTCGCAAATGAAAGTTCAGGTGTCGTCCAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGGTATGTTTGGTTTCCGTGCACTTTCCAGCGTATTTCTGTGCGTGAAGAAATGAAGGGTAAATCAGCACTTTAT] [-] EMBL CD167430 [CTATTGCACACACATTGTTCTTCTTTTAAAGACAGCTCGAAGAAATCTGATATCTGTATTTGCACCCGTTTTTACTGCTTATATAATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGGAACTCGCAAATGAAAGTTCAGGTGTCGTCCAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGGTATGTTTGGTTTCCGTGCACTTTCCAGCGTATTTCTGTGCGTGAAGAAATGAAGGGTAAATCAGCACTTTAT] consensusID : consensus_9722#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 248 fasta sequence [GCTCACGGAACTTTGGACTTGTGTCTATGACACACATTGTTCTCCGTAATTTTTCTTACTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGAAATGAAGGGTAAATCAGCACTTTA] [+] EMBL CD167291 [GCTCACGGAACTTTGGACTTGTGTCTATGACACACATTGTTCTCCGTAATTTTTCTTACTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATATTTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTCAGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGAAATGAAGGGTAAATCAGCACTTTA] consensusID : consensus_9722#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 173 fasta sequence [CTATTGCACACACATTGTTCTTCGTAATTTTTCTTTGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGAAGAAATCTAATATCTGTATTTGCACCCGTTTTTACTGCTTATATAATTTGCTGGGATTATCAAGCTTGCAAAGTNTATAAAGGATTGAACTCGCAATGAA] [-] EMBL CD128387 [CTATTGCACACACATTGTTCTTCGTAATTTTTCTTTGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGAAGAAATCTAATATCTGTATTTGCACCCGTTTTTACTGCTTATATAATTTGCTGGGATTATCAAGCTTGCAAAGTNTATAAAGGATTGAACTCGCAATGAA] [-] EMBL CD065743 [CTATTGCACACACATTGTTCTTCGTAATTTTTCTTTGTAAATGAAAGTTTCCTCAGTTTTAAAGACAGCTCGAAGAAATCTGATATCTGTATTTGCACCCGTTTTTACTGCTTATATAATATACTGGGA TATCAAGC TGCAAAG TATAAAGGATGGAAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9722#1 CTATTGCACACACATTGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTT 60 consensus_9722#4 CTATTGCACACACATTGTTCTTCGTAATTTTTCTTTGTAAATGAAAGTTTCCTCAGTTTT 60 consensus_9722#3 ---------GCTCACGGAACTTTG-GACTTGTGTCTATGACACACATTGTTCTCCGTAAT 50 consensus_9722#0 TCTATGCACACACATTGTTCTCCGTAATTTTTCTTAGTAAATGAAAGTTTCCTCAGTTTT 60 consensus_9722#2 --------------------------------CTATTGCACACACATTGTTCTTC-TTTT 27 * * * * * * ** * * consensus_9722#1 AAAGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAAT 120 consensus_9722#4 AAAGACAGCTCGAAGAAATCTAATATCTGTATTTGCACCCGTTTTTACTGCTTATATAAT 120 consensus_9722#3 TTTTCTTACTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATA-T 109 consensus_9722#0 AAAGACAGCTCGCAGAAATCTGATATCTGTATTGGCACCCACTTTTACTGCCTATATAAT 120 consensus_9722#2 AAAGACAGCTCGAAGAAATCTGATATCTGTATTTGCACCCGTTTTTACTGCTTATATAAT 87 **** ******** *********** ****** ********* ****** * consensus_9722#1 TTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTC 180 consensus_9722#4 TTGCTGGGATTATCAAGCTTGCAAAGTNTATAAAGGATTGAA-CTCGCAA-TGAA----- 173 consensus_9722#3 TTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTC 169 consensus_9722#0 TTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGAAACTCTCAAATGAAAGTTC 180 consensus_9722#2 TTACTGGGATTATCAAGCTTGCAAAAGTTATAAAGGATTGGAACTCGCAAATGAAAGTTC 147 ** ********************** ************ * *** *** **** consensus_9722#1 AGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGAAATGA 240 consensus_9722#4 ------------------------------------------------------------ consensus_9722#3 AGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGAAATGA 229 consensus_9722#0 AGGCGTCATCGAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGGTATGT 240 consensus_9722#2 AGGTGTCGTCCAGTAGTTTTCGAATGGCGTTGTTTGTGACTGGAATAGTAGCTGGTATGT 207 consensus_9722#1 AGGGTAAATCAGCACTTTGGCAAAAGAAAAGTTCCGTGAGCCGTCGG------------- 287 consensus_9722#4 ------------------------------------------------------------ consensus_9722#3 AGGGTAAATCAGCACTTTA----------------------------------------- 248 consensus_9722#0 TTGGTTTCCGTGCACTTACCAAGCGTATTTCTGTGCGTGAAGAAATGAAGGGTAAATCAG 300 consensus_9722#2 TTGGTTTCCGTGCACTTTCCAGCGTATTTCTGTGCGTGAAGAAATGAAGGGTAAATCAGC 267 consensus_9722#1 ---------------------- consensus_9722#4 ---------------------- consensus_9722#3 ---------------------- consensus_9722#0 CACTTTATGGCAAAAGAAAAGT 322 consensus_9722#2 ACTTTAT--------------- 274 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||