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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9725#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 919 fasta sequence
[TAACGACTAGGTAGAGTGGAGCTAGACTCACCACTGACGAGGCACAGTCATGGAAGTCCCATTAACTTGTCTATGTATATCACTACTTTGAATCTGTGAGTCTGGTGTGGTCATTGCATTGGTATGTAACACCCAGGCACGCGGATCAATAGGATGCACAGGTTCTTGGCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA-TGTAATAGGTCCAGGACGCTGAACTTGCTCTCGTAATGTGCGAACTGCATCGTCATTACTCA-TTTCTTCAAAACTAATCCCATTTGCTTCCAGAATCATATCCCCAGGTTCAATTCGTCCATCTTGAGCGACAGCACCACCTTTCATGATAGAACCTACATAAATCCCACCATCTCCAGATTTATTTGACTGACCAACTATACTGATACCCAGGAAATTGACGACATCCATGTTCAACGTAACTGCAACAATATTTAAAGACATGGTGGAATCTGTAATACTGCTGAATGAAGAGGCCCGGCTGATTGGTGGTGGACGCCTACGTCTTTGTCTGCGACGTGCACGGCCATACCGACGAGAAGATAATGTTGTTCCAGTGACTGATGAAAATCTGCTAGATTCTTCTTCCGAGTCTAAGAAGCTAGTTGA-TTCTAAATCAGAACTCATCATTGAA-GGAGCCTCGTAGGTATTCGAACTAGGTAAATGACGATAGTGGCGATGCCGTGAACCACTATGGGTTGTCTGTTGAGTAATATGACTACCACCACTCGTTGTATGGTGATGTCGACCACTAGATTTATAATTGTGAAAATTCCGTAGAGGAGCAATGCGATCTTGGTTAGCACTATGTACAGATTCCGTTTCTGTATCGTAATTTTGTCCAATATTTCCTCCATGTCCAAGGTTTGCA]
[+] EMBL CD068233 [TAACGACTAGGTAGAGTGGAGCTAGACTCACCACTGACGAGGCACAGTCATGGAAGTCCCATTAACTTGTCTATGTATATCACTACTTTGAATCTGTGAGTCTGGTGTGGTCATTGCATTGGTATGTAACACCCAGGCACGCGGATCAATAGGATGCACAGGTTCTTGGCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA TGTAATAGGTCCAGGACGCTGAACTTGCTCTCGTAATGTGCGAACTGCATCGTCATTACTCA TTTCTTCAAAACTAATCCCATTTGCTTCCAGAATCATATCCCCAGGTTCAATTCGTCCATCTTGAGCGACAGCACCACCTTTCATGATAGAACCTACATAAATCCCACCATCTCCAGATTTATTTGACTGACCAACTATACTGATACCCAGGAAATTGACGACATCCATGTTCAACGTAACTGCAACAATATTTAAAGACATGGTGGAATCTGTAATACTGCTGAATGAAGAGGCCCGGCTGATTGGTGGTGGACGCCTACGTCTTTGTCTGCGACGTGCACGGACATAC ]
[-] EMBL CD177681 [ ACAGGTTCTTGGCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGTTCCCAACATTTAGCAACAACTAATTGTAATAGGTCCAGGACGCTGAACTTGCTCTCGTAATGTGCGAACTGCATCGTCATTACTCATTTTCTTCAAAACTAATCCCATTTGCTTCCAG ]
[+] EMBL CD190410 [ TTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA TGTAATAGGTCCAGGACGCTGAACTTGCTCTCGTAATGTGCGAACTGCATCGTCATTACTCA TTTCTTCAAAACTAATCCCATTTGCTTCCAGAATCATATCCCCAGGTTCAATTCGTCCATCTTGAGCGACAGCACCACCTTTCATGATAGAACCTACATAAATCCCACCATCTCCAGATTTATTTGACTGACCAACTATACTGATACCCAGGAAATTGACGACATCCATGTTCAACGTAACTGCAACAATATTTAAAGACATGGTGGAATCTGTAATACTGCTGAATGAAGAGGCCCGGCTGATTGGTGGTGGACGCCTACGTCTTTGTCTGCGACGTGCACGGCCATACCGACGAGAAGATAATGTTGTTCCAGTGACTGATGAAAATCTGCTAGATTCTTCTTCCGAGTCTAAGAAGCTAGTTGA TTCTAAATCAGAA ]
[-] EMBL CD192233 [ ATGATAGAACCTACATAAATCCCACCATCTCCAGATTTATTTGACTGACCAACTATACTGATACCCAGGAAATTGACGACATCCATGTTCAACGTAACTGCAACAATATTT ]
[+] EMBL CD192388 [ CGTAACTGCAACAATATTTAAAGACATGGTGGAATCTGTAATACTGCTGAATGAAGAGGCCCGGCTGATTGGTGGTGGACGCCTACGTCTTTGTCTGCGACGTGCACGGCCATACCGACGAGGAGATAATGTTGTTCCAGTGACTGATGAAAATCTGCTA ]
[+] EMBL CD192322 [ CGTAACTGCAACAATATTTAAAGACATGGTGGAATCTGTAATACTGCTGAATGAAGAGGCCCGGCTGATTGGTGGTGGACGCCTACGTCTTTGTCTGCGACGTGCACGGCCATACCGACGAGAAGATAATGTTGTTCCAGTGACTGATGAAAATCTGCTAGATTCTTCTTCCGAGTCTAAGAAGCTAGTTGA TTCTAAATCAGAACTCATCATTGAA GGAGCCTCGTAGGTATTCGAACTAGGTAAATGACGATAGTGGCGATGCCGTGAACCACTATGGGTTGTCTGTTGAGTAATATGACTACCACCACTC ]
[-] EMBL CD181427 [ CTAAGAAGCTAG TGATTTCTAAATCAGAACTCATCA TGAAGGGAGCCTCGTAGGTATTCGAACTAGGTAAATGGCGATAGTGGCGATGCCGTGAACCACTATGGGTTGTCTGTTGAGTAATATGACTACCACCACTCGTTGTATGGTGATGTCGACCACTAGATTTATAATTGTGAAAATTCCGTAGAGGAGCAATGCGATCTTGGTTAGCACTATGTACAGATTCCGTTTCTGTATCGTAATTTTGTCCAATATTTCCTCCATGTCCAAGGTTTGCA]
consensusID : consensus_9725#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 607 fasta sequence
[AAAATGACGTAACAAGTAGATATTGACTGACAATAAAAACTGACCTTGGTTAGCACTATGTACAGATTCCGTTTCTGTATCGTAATTTTGTCCAATATTCCCTCCATGTCCAAGGTTTGCAGAAGTAGAATCAGCTGGAGCAGCGGTCGTATGTGACTGAAGTGTACAAGAGTTGACTTTGCATTCGTTGTTGCTTCGCGTATTAGACTCCAAATCAAGGTTAGGATCATATTTACTACTATTTACACTAGTGTTTGGTTCAACGGAGGGGCTGAGAACACCTGGATCAGACGCTATACTTTCATCTGTAGTCACCAACCAAGAAACAACACGGCCATTAAAACAAGGGAGTGGAGCGTTATCTTCGAATATTTCCTCCTTAACAACCC-CGAAGTCTACAAGAAAATTAGGGATTAAAAGAAATCAAAGAAAGCAGCAAGGAAGCGTGACTGACTGCATTAGAAAAAACATAGCTTGGACGTGAACCTACTCGTTACGTTTCACATAAGCAGTGAGAGAAAATCAATAGAGAGATGTTAGTGACGAAAATCAAAAAAGGGATATGGTACGAAATGAACGAGTGAAACANNAGAACAAAATATTTCTA]
[-] EMBL CD120062 [AAAATGACGTAACAAGTAGATATTGACTGACAATAAAAACTGACCTTGGTTAGCACTATGTACAGATTCCGTTTCTGTATCGTAATTTTGTCCAATATTCCCTCCATGTCCAAGGTTTGCAGAAGTAGAATCAGCTGGAGCAGCGGTCGTATGTGACTGAAGTGTACAAGAGTTGACTTTGCATTCGTTGTTGCTTCGCGTATTAGACTCCAAATCAAGGTTAGGATCATATTTACTACTATTTACACTAGTGTTTGGTTCAACGGAGGGGCTGAGAACACCTGGATCAGACGCTATACTTTCATCTGTAGTCACCAACCAAGAAACAACACGGCCATTAAAACAAGGGAGTGGAGCGTTATCTTCGAATATTTCCTCCTTAACAACCC CGAAGTC ]
[+] EMBL CD126940 [ ACAAGAGTTGACTTTGCATTCGTTGTTGCTTCGCGTATTAGACTCCAAATCAAGGTTAGGATCATATTTACTACTATTTACACTAGTGTTTGGTTCAACGGAGGGGCTGAGAACACCTGGATCAGACGCTATACTTTCATCTGTAGCCACCAACCAAGAAACAACACGGCCATTAAAACAAGGGAGTGGAGCGTTATCTTCGAATATTTCCTCCTTAACAACCCTAGGAAT TACAAGAAAATTAGGGATTAAAAGAAATCAAAGAAAGCAGCAAGGAAGCGTGACTGACTGCATTAGAAAAAACATAGCTTGGACGTGAACCTACTCGTTACGTTTCACATAAGCAGTGAGAGAAAATCAATAGAGAGATGTTAGTGACGAAAATCAAAAAAGGGATATGGTACGAAATGAACGAGTGAAACANNAGAACAAAATATTTCTA]
consensusID : consensus_9725#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 297 fasta sequence
[GAGAATCCAGTGTGGCATTGAAGTTTGCCCTGATGTCAAGGTGCCCATGCTCATACCAGGAGTAAGACCAGGAGGGCTAAGAGTGGAGCTAGACTCACCACCTGACGAGGCACCAGTCATGGAAGTCCCATTAACTTGTCTATGTATATCACTACTTTGAATCTGTGAGTCTGGTGTGGTCATTGCATTGGTATGTAACACCCAGGCACGCGGATCAATAGGATGCACAGGTTCTTGGCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA]
[+] EMBL CD188746 [GAGAATCCAGTGTGGCATTGAAGTTTGCCCTGATGTCAAGGTGCCCATGCTCATACCAGGAGTAAGACCAGGAGGGCTAAGAGTGGAGCTAGACTCACCACCTGACGAGGCACCAGTCATGGAAGTCCCATTAACTTGTCTATGTATATCACTACTTTGAATCTGTGAGTCTGGTGTGGTCATTGCATTGGTATGTAACACCCAGGCACGCGGATCAATAGGATGCACAGGTTCTTGGCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA]
[-] EMBL CD181914 [ AGGCACGCGGATCAATAGGATGCACAGGTTCTTGGCGAGGTATTGT AAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9725#0 ------------------------------------------------------------
consensus_9725#2 GAGAATCCAGTGTGGCATTGAAGTTTGCCCTGATGTCAAGGTGCCCATGCTCATACCAGG 60
consensus_9725#1 ------------------------------------------------------------
consensus_9725#0 -------TAACGACTAGGTAGAGTGGAGCTAGACTCACCAC-TGACGAGGCAC--AGTCA 50
consensus_9725#2 AGTAAGACCAGGAGGGCTAAGAGTGGAGCTAGACTCACCACCTGACGAGGCACC-AGTCA 119
consensus_9725#1 --------------------------------------AAAATGACGTAACAAGTAGATA 22
* ***** ** ** *
consensus_9725#0 TGGAAGTCCCATTAAC-TTGTCTATGTATATCACTACTTTGAATCTGTGAGTCTGGTGTG 109
consensus_9725#2 TGGAAGTCCCATTAAC-TTGTCTATGTATATCACTACTTTGAATCTGTGAGTCTGGTGTG 178
consensus_9725#1 TTGACTGACAATAAAAACTGACCTTGGTTAGCACTATGTACAGATTCCGTTTCTG-TATC 81
* ** * ** ** ** * ** ** ***** * * * * **** * *
consensus_9725#0 GTCATTGCATTGGTATGTAACACCCAGGCACGCGGATCA-ATAGGATGCACAGGTTCTTG 168
consensus_9725#2 GTCATTGCATTGGTATGTAACACCCAGGCACGCGGATCA-ATAGGATGCACAGGTTCTTG 237
consensus_9725#1 GTAATTTTGTCCA-ATATTCCCTCCATGTCCAAGGTTTGCAGAAGTAGAATCAGCTGGAG 140
** *** * ** * * *** * * ** * * * * * * * * *
consensus_9725#0 GCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA 228
consensus_9725#2 GCGAGGTATTGTAAAATAACGTTCGGTTGGATTAGGATCCCAACATTTAGCAACAACTAA 297
consensus_9725#1 CAGCGGTCGTATGTGACTGAAGTGTACAAGAGTTGACTTT--GCATTCGTTGTTGCTTCG 198
* *** * * * * ** * * * **** *
consensus_9725#0 TGTAATAGGTCCAGGACGCTGAACTTGCTCTCGTAATGTGCGAACTGCATCGTCATTACT 288
consensus_9725#2 ------------------------------------------------------------
consensus_9725#1 CGTATTAGACTCCAAATCAAGGTTAGGATCATATTTACTACTATTTACACTAGTGTTTGG 258
consensus_9725#0 CATTTCTTCAAAACTAATCCCATTTGCTTCCAGAATCATATCCCCAGGTTCAATTCGTCC 348
consensus_9725#2 ------------------------------------------------------------
consensus_9725#1 TTCAACGGAGGGGCTGAGAACACCTGGATCAGACGCTATACTTTCATCTGTAGT-CACCA 317
consensus_9725#0 ATCTTGAGCGACAGCACCACCTTTCATGATAGAACCTACATAAATCCCACCATCTCCAGA 408
consensus_9725#2 ------------------------------------------------------------
consensus_9725#1 ACC--AAGAAACAACACGGCCATTAAAACAAGGGAGTGGA------GCGTTATCTTCGAA 369
consensus_9725#0 TTTATTTGACTGACCAACTATACTGATACCCAGGAAATTGACGACATCCATGTTCAACGT 468
consensus_9725#2 ------------------------------------------------------------
consensus_9725#1 TATTTCCTCCTTAACAACCCCGAAGTCTACAAGAAAATTAGGGA--------TTAAAAGA 421
consensus_9725#0 AACTGCAACAATATTTAAAGACATGGTGGAATCTGTAATACTGCTGAATGAAGAGGCCCG 528
consensus_9725#2 ------------------------------------------------------------
consensus_9725#1 AATCAAAGAAAGCAGCAAGGAAGCGTGACTGACTGCATTA---------GAAAAAACATA 472
consensus_9725#0 GCTGATTGGTGGTGGACGCCTACGTCTTTGTCTGCGACGTGCACGGCCATACCGACGAGA 588
consensus_9725#2 ------------------------------------------------------------
consensus_9725#1 GCTTGGACGTGA-ACCTACTCGTTACGTTTCACATAAGCAGTGAGAGAAAATCAATAGAG 531
consensus_9725#0 AGATAATGTTGTTCCAGTGACTGATGAAAATCTGCTA--GATTCTTCTTCCGAGTCTAAG 646
consensus_9725#2 ------------------------------------------------------------
consensus_9725#1 AGATGTTAGTGACGAAAATCAAAAAAGGGATATGGTACGAAATGAACGAGTGAAACANNA 591
consensus_9725#0 AAGCTAGTTGATTCTAAATCAGAACTCATCATTGAAGGAGCCTCGTAGGTATTCGAACTA 706
consensus_9725#2 ------------------------------------------------------------
consensus_9725#1 GAACAAAATATTTCTA-------------------------------------------- 607
consensus_9725#0 GGTAAATGACGATAGTGGCGATGCCGTGAACCACTATGGGTTGTCTGTTGAGTAATATGA 766
consensus_9725#2 ------------------------------------------------------------
consensus_9725#1 ------------------------------------------------------------
consensus_9725#0 CTACCACCACTCGTTGTATGGTGATGTCGACCACTAGATTTATAATTGTGAAAATTCCGT 826
consensus_9725#2 ------------------------------------------------------------
consensus_9725#1 ------------------------------------------------------------
consensus_9725#0 AGAGGAGCAATGCGATCTTGGTTAGCACTATGTACAGATTCCGTTTCTGTATCGTAATTT 886
consensus_9725#2 ------------------------------------------------------------
consensus_9725#1 ------------------------------------------------------------
consensus_9725#0 TGTCCAATATTTCCTCCATGTCCAAGGTTTGCA 919
consensus_9725#2 ---------------------------------
consensus_9725#1 ---------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||