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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9728#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1634 fasta sequence
[AAGGTGCAAATAATACAAGTCGAACATCAAAGCGCAAACAGTCACC-TATTCCGCTACAATCCCATCATATTGCTCAACCTGGGGATGTGATGATAGTTGGTGAACCAACTCTTATGGGCGGGGATTTCGGTGATGAGGATGAACGTTTAATAACTCGATTAGAAAATACTCAATATGATGCCGTGGCTGCTGCTGCAGCCAATTCAGGCGTTATGGCTTCTCATATAAATTCTGGCCCTTTTCCTGGCTCTGGCGATTCGCCTGCTGGTATTATATC-T-TCCCCACTAGGTTTAAGTTCAGGAGGAAATATGTTAAATTCTAA-TCAACCACAGCAACAGATAAACTCCCTTCAGTTTCGTGCGGGTCCAATGTCTTCAGGTGGACCAAATCAGAGCATGCCACATGAAGGTGTTTTTCCCGGTAATCTTACTTCCCTGCAACAAAATCAACCAGTTCCTATGCCTCCTAGTCAGTCATTTTATTCGAGTTCAGCGCCAAACAGAAATTTGCATCATCACTCTCAAATGATGGGACAACAATTTATGCCAGTATTTACCAAAGCCCAAATGTCAGCTTCTAATATGCTTAATAGAGGTGATCATTATATGCCATCAGGAAATGGAGATGCCATGCATCAACCAACTCGGTCAAGTAGTGCTTCGTCTTTAGTTGACGGTACGAATGGTTTGAGTGGGTTCCCT-ACT-GTGCCTCCCCCAGTCTTCTTCCTTCAAGACCTCCTGCGCGTTTCACCCCGCCTTCTCTTCCGAATGGGTTAGGTTCTTCGGTTGTATCATCTCAACAGTCAAGCTTTATGATGCCAAATGAAGTGATGGGCAGTGGAGGTACGCAAATGGGACATGTCTCTGTTCCCGGTACCCCTTTGACTTCCCCACTGACCTCCTCCTCTTTTGCAATGGATATGATGGATAATCAGAATGTCCTTCATTCTGCACCCTCAACTTTGATCTCTACAACTATCAAGTCAAATAATTCTCCTATGTTGTACAATTCAATCGGAACAAGCTGTAGTGGAAATCAGTCGACCCCGGAGTCTATAATGCACCCAACAATAAGTGGTATAGGATGCGATGTTTCTTCGGCTGTGATGAATGATAATGAAGATCTTAAGATGATTAATAGTAATGGCGCACCCTCACGTCCCACTGCTGCTGAATCAATGTGAATTGAGATCTCTGAAAAAAGCATCATGGATCTATACTGCATTTTGCCAAGTGGATATAATTTCCATTTTTTCACTGGCTACCAAACGAAACTAATTACGAACTTTGCACAAAGATAAACGATACTCTGCAACTTCAGCTGATCCATCCAAATACTATCTTGTTCATTGGTATTNTTTTTGTTCGACGACTAATTATTCACTAAGCATATATATATATATATATGCCAAATCGTGAGCTCATTTTCTTCTACAAATGTTTAATTTACAATCTCTTTCATTGCCAAATAAGTAACTATTCCTTTCTCTACACTTCCCCCAGTCTTCAGTAATCCTACTTCATATTTTTATTTGTACATATTTTTTGCATATGTACCCATGAATATATATATATATATATATATATATATATATATTCAGATCGTTTCTTGTATGTTATAATTATATTTGAATA]
[+] EMBL CD163562 [AAGGTGCAAATAATACAAGTCGAACATCAAAGCGCAAACAGTCACC TATTCCGCTACAATCCCATCATATTGCTCAACCTGGGGATGTGATGATAGTTGGTGAACCAACTCTTATGGGCGGGGATTTCGGTGATGAGGATGAACGTTTAATAACTCGATTAGAAAATACTCAATATGATGCCGTGGCTGCTGCTGCAGCCAATTCAGGCGTTATGGCTTCTCATATAAATTCTGGCCCTTTTCCTGGCTCTGGCGATTCGCCTGCTGGTATTATATC T TCCCCACTAGGTTTAAGTTCAGGAGGAAATATGTTAAATTCTAA TCAACCACAGCAACAGATAAACTCCCT ]
[-] EMBL CD126635 [ TCGAACATCAAAGCGCAAACAGTCACC TATTCCGCTACAATCCCATCATATTGCTCAACCTGGGGATGTGATGATAGTTGGTGAACCAACTCTTATGGGCGGGGATTTCGGTGATGAGGATGAACGTTTAATAACTCGATTAGAAAATACTCAATATGATGCCGTGGCTGCTGCTGCAGCCAATTCAGGCGTTATGGCTTCTCATATAAATCCTGGCCCTTTTCCTGGCTCTGGCGATTCGCCTGCTGGTATTATATC T TCCCCACTAGGTTTAAGTTCAGGAGGAAATATGTTAAATTCTAACTCAACCACAGCAACAGATAAACTCCCTTCAGTTTCGTGCGGGTCCAATGTCTTCAGGTGGACCAAATCAGAGCATGCCACATGAAGGTGTTTGT CCGGTAATC ]
[-] EMBL CD071939 [ caactTCACCATATTCCGCTACAATCCCATCATATTGCTCAACCTGGGGATGTGATGATAGTTGGTGAACCAACTCTTATGGGCGGGGATTTCGGTGATGAGGATGAACGTTTAATAACTCGATTAGAAAATACTCAATATGATGCCGTGGCTGCTGCTGCAGCCAATTCAGGCGTTATGGCTTCTCATATAAATTCTGGCCCTTTTCCTGGCTCTGGCGATTCGCCTGCTGGTATTATATC T TCCCCACTAGGTTTAAGTTCAGGAGGAAATATGTTAAATTCTAA TCAACCACAGCAACAGATAAACTCCCTGCAGTTTCGTGCGGGTCCAATGTCTTCAGGTGGACCA ]
[+] EMBL CD187427 [ TGATAGTTGGTGAACCAACTCTTATGGGCGGGGATTTCGGTGATGAGGATGAACGTTTAATAACTCGATTAGAAAATACTCAATATGATGCCGTGGCTGCTGCTGCAGCCAATTCAGGCGTTATGGCTTCTCATATAAATTCTGGCCCTTTTCCTGGCTCTGGCGATTCGCCTGCTGGTATTATATC T TCCCCACTAGGTTTAAGTTCAGGAGGAAATATGTTAAATTCTAA TCAACCACAGCAACAGATAAACTCCCTTCAGTTTCGTGCGGGTCCAATGTCTTCAGGTGGACCAAATCAGAGCATGCCACATGAAGGTGTTTTTCCCGGTAATCTTACTTCCCTGCAA ]
[-] EMBL CD189077 [ ATAGTTGGTGAACCAACTCTTATGGGCGGGGATTTCGGTGATGAGGATGAACGTTTAATAACTCGATTAGAAAATACTCAATATGATGCCGTGGCTGCTGCTGCAGCCAATTCAGGCGTTATGGCTTCTCATATAAATTCTGGCCCTTTTCCTGGCTCTGGCGATTCGCCTGCTGGTATTATATC T TCCCCACTAGGTTTAAGTTCAGGAGGAAATATGTTAAATTCTAA TCAACCACAGCAACAGATAAACTCCCTTCAGTTTCGTGCGGGTCCAATGTCTTCAGGTGGACCAAATCAGAGCATGCCACATGAAGGTGTTTTTCCCGGTAATCTTACTCCCCTGCAACAAAATCAACCAGTTCCTATGCCTCCTAGTCAGTCATTTTATTCGAGTTCAGCGCCAAACAGAAATTTGCATCATCACTCTCAAATGATGGGACAACAATTTATGCCAGTATTTACCAAAGCCCAAATGTCAGCTTCTAATATGCTTAATAGAGGTGATCAT ]
[+] EMBL CD114853 [ CAACTCTTATGGGCGGCGATTTCCGTGATGAGGATGAACGTTTAATAACTCGATTAGAAAATACTCAATATGATGCCGTGGCTGCTGCTGCAGCCAATTCAGGCGTTATGGCTTCTCATATAAATTCTGGCCCTTTTCCTGGCTCTGGCGATTCGCCTGCTGGTATTATATCGTGTCCCCACTATGTTTAAGTTCAGGAGGAAATATGTTAAATTCTAA TCAACCACAGCAACAGATAAACTCCCTTCAGTTTCGTGCGGGTCCAATGTCTTCAGGTGGACCAAATCAGAGCATGCCACATGAAGGTGTTTTTCCCGGTAATCTTACTTCCCTGCAACAAAATCAACCAGTTCCTATGCCTCCTAGTCAGTCATTTTATTCGAGTTCAGCGCCAAACAGAAATTTGCATCATCACTCTCAAATGATTGGACAACAATTTATGCCAGTATTTACCAAAGCCCAAATGTCAGCTTCTAATATGCTTAATAGAGGTGATCATTATATGCCATCAGGAAATGGAGATGCCATGCATCAACCAACTCGGTCAAGTAGT ]
[-] EMBL CD161114 [ TTTATGCCAGTATTTACCAAAGCCCAAATGTCAGCTTCTAATATGCTTAATAGAGGTGATCATTATATGCCATCAGGAAATGGAGATGCCATGCATCAACCAACTCGGTCAAGTAGTGCTTCGTCTTTAGTTGACGGTACGAATGGTTTGAGTGGGTTCCCTCACT GTGCCTCCCCCAGTCTTCTTCCTTCAAGACCTCCTGCGCGTTTCACCCCGCCTTCTCTTCCGAATGGGTTAGGTTCTTCGGTTGTATCATCTCAACAGTCAAGCTTTATGATGCCAAATGAAGTGATGGGCAGTGGAGGTACGCAAATGGGACATGTCTCTGTTCCCGGTACCCCTTTGACTTCCCCACTGACCTCCTCCTCTTTTGCAATGGATATGATGGATAATCAGAATGTCCTTCATTCTGCACCCTCAACTTTGATCTCTACAACTATCAAGTCAAATAATTCTCCTATGTTGTACAATTCAATCGGAACAAGCTGTAGTG ]
[+] EMBL CD082119 [ ggaCT ACTNGTGCCTCCCCCAGTCTTCTTCCTTCAATATCTCCTGCGCGTTTCACCCCGCCTTCTCTTCCGAATGGGTTAGGTTCTTCGGTTGTATCATCTCAACAGTCAAGCTTTATGATGCCAAATGAAGTGATGGGCAGTGGAGGTACGCAAATGGGACATGTCTCTGTTCCCGGTACCCCTTTGACTTCCCCACTGACCTCCTCCTCTTTTGCAATGGATATGATGGATAATCAGAATGTCCTTCATTCTGCACCCTCAACTTTGATCTCTACAACTATCAAGTCAAATAATTCTCCTATGTTGTACAATTCAATCGGAACAAGCTGTAGTGGAAATCAGTCGACCCCGGAGTCTATAATGCACCCAACAATAAGTGGTATAGGATGCGATGTTTCTTCGGCTGTGATGAATGATAATGAAGATCTTAAGATGATTAATAGTAATGGCGCACCCTCACGTCCCACTGCTGCTGAATCAATGTGAATTGAGATCTCTGAAAAAAGCATCATGGATCTATACTGCATTTTGCCAAGTGGATATAATTTCCATTTTTTCACTGGCTACCAAACGAAACTAATTACGAACTTTGCACAAAGATAAACGATACTCTGCAACTTCAGCTGATCCATCCAAATACTATCTTGTTCATTGGTATTNTTTTTGTTCGACGACTAATTATTCACTAAGCATA ]
[+] EMBL CD061376 [ ACAAGCTGTAGTGGAAATCAGTCGACCCCGGAGTCTATAATGCACCCAACAATAAGTGGTATAGGATGCGATGTTTCTTCGGCTGTGATGAATGATAATGAAGATCTTAAGATGATTAATAGTAATGGCGCACCCTCACGTCCCACTGCTGCTGAATCAATGTGAATTGAGATCTCTGAAGAAAGCATCATGGATCTATACTGCATTTTGCCAAGTGGATATAATTTCCATTTTTTCACTGGCTACCAAACGAAACTAA ]
[-] EMBL CD075734 [ CAACAATAAGTGGTATAGGATGCGATGTTTCTTCGGCTGTGATGAATGATAATGAAGATCTTAAGATGATTAATAGTAATGGCGCACCCTCACGTCCCACTGCTGCTGAATCAATGTGAATTGAGATCTCTGAAAAAAGCATCATGGATCTATACTGCATTTTGCCAAGTGGATATAATTTCCATTTTTTCACTGGCTACCAAACGAAACTAATTACGAACTTTGCACAAAGATAAACGATACTCTGCAACTTCAGCTGATCCATCCAAATACTATCTTGTTCATTGGTATTTTTTTTGTTCGACGACTAATTATTCACTAAGCATATATATATATATATATGCCAAATCGTGAGCTCATTTTCTTCTACAAATGTTTAATTTACAATCTCTTTCATTGCCAAATAAGTAACTATTCCTTTCTCTACACTTCCCCCAGTCTTCAGTAATCCTACTTCATATTTTTATTTGTACATATTTTTTGCATATGTACCCATGAATATATATATATATATATATATATATATATATATTCAGATCGTTTCTTGTATGTTATAATTATATTTGAATA]
consensusID : consensus_9728#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 317 fasta sequence
[TATACTGCATNTGGCANGTGGATATAATTTCCATTTTTTCACTGGCTACCAAACGAAATATTAGACTTGNCAAGATAAACGATACTCTGCAACTTCAGCTGATCCATCCAAATACTATCTTGTTCATGGTATTTTTTTGTCGAGACTAATTATTCACTAAGCATATTATATTATATTGCAAATCGGAGCTCATATTCTTCTCAAATGTTATTTACAACTCTTCATGCAAATAGTANTATCCTTCTCTAANTCCCCCAGNCTCAGAACCTACTTCATTNTTATTGGACATTTNGAGGATATGTACCAGATATTNTTTG]
[+] EMBL SM711 [TATACTGCATNTGGCANGTGGATATAATTTCCATTTTTTCACTGGCTACCAAACGAAATATTAGACTTGNCAAGATAAACGATACTCTGCAACTTCAGCTGATCCATCCAAATACTATCTTGTTCATGGTATTTTTTTGTCGAGACTAATTATTCACTAAGCATATTATATTATATTGCAAATCGGAGCTCATATTCTTCTCAAATGTTATTTACAACTCTTCATGCAAATAGTANTATCCTTCTCTAANTCCCCCAGNCTCAGAACCTACTTCATTNTTATTGGACATTTNGAGGATATGTACCAGATATTNTTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9728#0 AAGGTGCAAATAATACAAGTCGAACATCAAAGCGCAAACAGTCACCTATTCCGCTACAAT 60
consensus_9728#1 ------------------------------------------------------------
consensus_9728#0 CCCATCATATTGCTCAACCTGGGGATGTGATGATAGTTGGTGAACCAACTCTTATGGGCG 120
consensus_9728#1 ------------------------------------------------------------
consensus_9728#0 GGGATTTCGGTGATGAGGATGAACGTTTAATAACTCGATTAGAAAATACTCAATATGATG 180
consensus_9728#1 ------------------------------------------------------------
consensus_9728#0 CCGTGGCTGCTGCTGCAGCCAATTCAGGCGTTATGGCTTCTCATATAAATTCTGGCCCTT 240
consensus_9728#1 ------------------------------------------------------------
consensus_9728#0 TTCCTGGCTCTGGCGATTCGCCTGCTGGTATTATATCTTCCCCACTAGGTTTAAGTTCAG 300
consensus_9728#1 ------------------------------------------------------------
consensus_9728#0 GAGGAAATATGTTAAATTCTAATCAACCACAGCAACAGATAAACTCCCTTCAGTTTCGTG 360
consensus_9728#1 ------------------------------------------------------------
consensus_9728#0 CGGGTCCAATGTCTTCAGGTGGACCAAATCAGAGCATGCCACATGAAGGTGTTTTTCCCG 420
consensus_9728#1 ------------------------------------------------------------
consensus_9728#0 GTAATCTTACTTCCCTGCAACAAAATCAACCAGTTCCTATGCCTCCTAGTCAGTCATTTT 480
consensus_9728#1 ------------------------------------------------------------
consensus_9728#0 ATTCGAGTTCAGCGCCAAACAGAAATTTGCATCATCACTCTCAAATGATGGGACAACAAT 540
consensus_9728#1 ------------------------------------------------------------
consensus_9728#0 TTATGCCAGTATTTACCAAAGCCCAAATGTCAGCTTCTAATATGCTTAATAGAGGTGATC 600
consensus_9728#1 ------------------------------------------------------------
consensus_9728#0 ATTATATGCCATCAGGAAATGGAGATGCCATGCATCAACCAACTCGGTCAAGTAGTGCTT 660
consensus_9728#1 ------------------------------------------------------------
consensus_9728#0 CGTCTTTAGTTGACGGTACGAATGGTTTGAGTGGGTTCCCTACTGTGCCTCCCCCAGTCT 720
consensus_9728#1 ------------------------------------------------------------
consensus_9728#0 TCTTCCTTCAAGACCTCCTGCGCGTTTCACCCCGCCTTCTCTTCCGAATGGGTTAGGTTC 780
consensus_9728#1 ------------------------------------------------------------
consensus_9728#0 TTCGGTTGTATCATCTCAACAGTCAAGCTTTATGATGCCAAATGAAGTGATGGGCAGTGG 840
consensus_9728#1 ------------------------------------------------------------
consensus_9728#0 AGGTACGCAAATGGGACATGTCTCTGTTCCCGGTACCCCTTTGACTTCCCCACTGACCTC 900
consensus_9728#1 ------------------------------------------------------------
consensus_9728#0 CTCCTCTTTTGCAATGGATATGATGGATAATCAGAATGTCCTTCATTCTGCACCCTCAAC 960
consensus_9728#1 ------------------------------------------------------------
consensus_9728#0 TTTGATCTCTACAACTATCAAGTCAAATAATTCTCCTATGTTGTACAATTCAATCGGAAC 1020
consensus_9728#1 ------------------------------------------------------------
consensus_9728#0 AAGCTGTAGTGGAAATCAGTCGACCCCGGAGTCTATAATGCACCCAACAATAAGTGGTAT 1080
consensus_9728#1 ------------------------------------------------------------
consensus_9728#0 AGGATGCGATGTTTCTTCGGCTGTGATGAATGATAATGAAGATCTTAAGATGATTAATAG 1140
consensus_9728#1 ------------------------------------------------------------
consensus_9728#0 TAATGGCGCACCCTCACGTCCCACTGCTGCTGAATCAATGTGAATTGAGATCTCTGAAAA 1200
consensus_9728#1 ------------------------------------------------------------
consensus_9728#0 AAGCATCATGGATCTATACTGCATTTTGCCAAGTGGATATAATTTCCATTTTTTCACTGG 1260
consensus_9728#1 --------------TATACTGCATNTGGC-ANGTGGATATAATTTCCATTTTTTCACTGG 45
********** * ** * ****************************
consensus_9728#0 CTACCAAACGAAACTAATTACGAACTTTGCACAAAGATAAACGATACTCTGCAACTTCAG 1320
consensus_9728#1 CTACCAAACGAAAT--ATTA--GACTTGNCA---AGATAAACGATACTCTGCAACTTCAG 98
************* **** **** ** **************************
consensus_9728#0 CTGATCCATCCAAATACTATCTTGTTCATTGGTATTNTTTTTGTTCGACGACTAATTATT 1380
consensus_9728#1 CTGATCCATCCAAATACTATCTTGTTCAT-GGTATTTTTTT--GTCGA-GACTAATTATT 154
***************************** ****** **** **** ***********
consensus_9728#0 CACTAAGCATATATATATATATATATGCCAAATCGTGAGCTCATTTTCTTCTACAAATGT 1440
consensus_9728#1 CACTAAGCATAT---TATAT-TATATTGCAAATCG-GAGCTCATATTCTTCT-CAAATGT 208
************ ***** ***** ******* ******** ******* *******
consensus_9728#0 TTAATTTACAATCTCTTTCATTGCCAAATAAGTAACTATTCCTTTCTCTACACTTCCCCC 1500
consensus_9728#1 T--ATTTACAA-CTCTT-------CATGCAAATAGTANTATCCTTCTCTAAN--TCCCCC 256
* ******** ***** ** ** ** * * ******* ******
consensus_9728#0 AGTCTTCAGTAATCCTACTTCATATTTTTATTTGTACATATTTTTTGCATATGTACCCAT 1560
consensus_9728#1 AGNCT-CAGAA--CCTACTTCA--TTNTTATTGG---ACATTTNGAGGATATGTACCAGA 308
** ** *** * ********* ** ***** * * **** * *********
consensus_9728#0 GAATATATATATATATATATATATATATATATATATTCAGATCGTTTCTTGTATGTTATA 1620
consensus_9728#1 TATTNTTTG--------------------------------------------------- 317
* * * *
consensus_9728#0 ATTATATTTGAATA 1634
consensus_9728#1 --------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||