These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9728#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1634 fasta sequence [AAGGTGCAAATAATACAAGTCGAACATCAAAGCGCAAACAGTCACC-TATTCCGCTACAATCCCATCATATTGCTCAACCTGGGGATGTGATGATAGTTGGTGAACCAACTCTTATGGGCGGGGATTTCGGTGATGAGGATGAACGTTTAATAACTCGATTAGAAAATACTCAATATGATGCCGTGGCTGCTGCTGCAGCCAATTCAGGCGTTATGGCTTCTCATATAAATTCTGGCCCTTTTCCTGGCTCTGGCGATTCGCCTGCTGGTATTATATC-T-TCCCCACTAGGTTTAAGTTCAGGAGGAAATATGTTAAATTCTAA-TCAACCACAGCAACAGATAAACTCCCTTCAGTTTCGTGCGGGTCCAATGTCTTCAGGTGGACCAAATCAGAGCATGCCACATGAAGGTGTTTTTCCCGGTAATCTTACTTCCCTGCAACAAAATCAACCAGTTCCTATGCCTCCTAGTCAGTCATTTTATTCGAGTTCAGCGCCAAACAGAAATTTGCATCATCACTCTCAAATGATGGGACAACAATTTATGCCAGTATTTACCAAAGCCCAAATGTCAGCTTCTAATATGCTTAATAGAGGTGATCATTATATGCCATCAGGAAATGGAGATGCCATGCATCAACCAACTCGGTCAAGTAGTGCTTCGTCTTTAGTTGACGGTACGAATGGTTTGAGTGGGTTCCCT-ACT-GTGCCTCCCCCAGTCTTCTTCCTTCAAGACCTCCTGCGCGTTTCACCCCGCCTTCTCTTCCGAATGGGTTAGGTTCTTCGGTTGTATCATCTCAACAGTCAAGCTTTATGATGCCAAATGAAGTGATGGGCAGTGGAGGTACGCAAATGGGACATGTCTCTGTTCCCGGTACCCCTTTGACTTCCCCACTGACCTCCTCCTCTTTTGCAATGGATATGATGGATAATCAGAATGTCCTTCATTCTGCACCCTCAACTTTGATCTCTACAACTATCAAGTCAAATAATTCTCCTATGTTGTACAATTCAATCGGAACAAGCTGTAGTGGAAATCAGTCGACCCCGGAGTCTATAATGCACCCAACAATAAGTGGTATAGGATGCGATGTTTCTTCGGCTGTGATGAATGATAATGAAGATCTTAAGATGATTAATAGTAATGGCGCACCCTCACGTCCCACTGCTGCTGAATCAATGTGAATTGAGATCTCTGAAAAAAGCATCATGGATCTATACTGCATTTTGCCAAGTGGATATAATTTCCATTTTTTCACTGGCTACCAAACGAAACTAATTACGAACTTTGCACAAAGATAAACGATACTCTGCAACTTCAGCTGATCCATCCAAATACTATCTTGTTCATTGGTATTNTTTTTGTTCGACGACTAATTATTCACTAAGCATATATATATATATATATGCCAAATCGTGAGCTCATTTTCTTCTACAAATGTTTAATTTACAATCTCTTTCATTGCCAAATAAGTAACTATTCCTTTCTCTACACTTCCCCCAGTCTTCAGTAATCCTACTTCATATTTTTATTTGTACATATTTTTTGCATATGTACCCATGAATATATATATATATATATATATATATATATATATTCAGATCGTTTCTTGTATGTTATAATTATATTTGAATA] [+] EMBL CD163562 [AAGGTGCAAATAATACAAGTCGAACATCAAAGCGCAAACAGTCACC TATTCCGCTACAATCCCATCATATTGCTCAACCTGGGGATGTGATGATAGTTGGTGAACCAACTCTTATGGGCGGGGATTTCGGTGATGAGGATGAACGTTTAATAACTCGATTAGAAAATACTCAATATGATGCCGTGGCTGCTGCTGCAGCCAATTCAGGCGTTATGGCTTCTCATATAAATTCTGGCCCTTTTCCTGGCTCTGGCGATTCGCCTGCTGGTATTATATC T TCCCCACTAGGTTTAAGTTCAGGAGGAAATATGTTAAATTCTAA TCAACCACAGCAACAGATAAACTCCCT ] [-] EMBL CD126635 [ TCGAACATCAAAGCGCAAACAGTCACC TATTCCGCTACAATCCCATCATATTGCTCAACCTGGGGATGTGATGATAGTTGGTGAACCAACTCTTATGGGCGGGGATTTCGGTGATGAGGATGAACGTTTAATAACTCGATTAGAAAATACTCAATATGATGCCGTGGCTGCTGCTGCAGCCAATTCAGGCGTTATGGCTTCTCATATAAATCCTGGCCCTTTTCCTGGCTCTGGCGATTCGCCTGCTGGTATTATATC T TCCCCACTAGGTTTAAGTTCAGGAGGAAATATGTTAAATTCTAACTCAACCACAGCAACAGATAAACTCCCTTCAGTTTCGTGCGGGTCCAATGTCTTCAGGTGGACCAAATCAGAGCATGCCACATGAAGGTGTTTGT CCGGTAATC ] [-] EMBL CD071939 [ caactTCACCATATTCCGCTACAATCCCATCATATTGCTCAACCTGGGGATGTGATGATAGTTGGTGAACCAACTCTTATGGGCGGGGATTTCGGTGATGAGGATGAACGTTTAATAACTCGATTAGAAAATACTCAATATGATGCCGTGGCTGCTGCTGCAGCCAATTCAGGCGTTATGGCTTCTCATATAAATTCTGGCCCTTTTCCTGGCTCTGGCGATTCGCCTGCTGGTATTATATC T TCCCCACTAGGTTTAAGTTCAGGAGGAAATATGTTAAATTCTAA TCAACCACAGCAACAGATAAACTCCCTGCAGTTTCGTGCGGGTCCAATGTCTTCAGGTGGACCA ] [+] EMBL CD187427 [ TGATAGTTGGTGAACCAACTCTTATGGGCGGGGATTTCGGTGATGAGGATGAACGTTTAATAACTCGATTAGAAAATACTCAATATGATGCCGTGGCTGCTGCTGCAGCCAATTCAGGCGTTATGGCTTCTCATATAAATTCTGGCCCTTTTCCTGGCTCTGGCGATTCGCCTGCTGGTATTATATC T TCCCCACTAGGTTTAAGTTCAGGAGGAAATATGTTAAATTCTAA TCAACCACAGCAACAGATAAACTCCCTTCAGTTTCGTGCGGGTCCAATGTCTTCAGGTGGACCAAATCAGAGCATGCCACATGAAGGTGTTTTTCCCGGTAATCTTACTTCCCTGCAA ] [-] EMBL CD189077 [ ATAGTTGGTGAACCAACTCTTATGGGCGGGGATTTCGGTGATGAGGATGAACGTTTAATAACTCGATTAGAAAATACTCAATATGATGCCGTGGCTGCTGCTGCAGCCAATTCAGGCGTTATGGCTTCTCATATAAATTCTGGCCCTTTTCCTGGCTCTGGCGATTCGCCTGCTGGTATTATATC T TCCCCACTAGGTTTAAGTTCAGGAGGAAATATGTTAAATTCTAA TCAACCACAGCAACAGATAAACTCCCTTCAGTTTCGTGCGGGTCCAATGTCTTCAGGTGGACCAAATCAGAGCATGCCACATGAAGGTGTTTTTCCCGGTAATCTTACTCCCCTGCAACAAAATCAACCAGTTCCTATGCCTCCTAGTCAGTCATTTTATTCGAGTTCAGCGCCAAACAGAAATTTGCATCATCACTCTCAAATGATGGGACAACAATTTATGCCAGTATTTACCAAAGCCCAAATGTCAGCTTCTAATATGCTTAATAGAGGTGATCAT ] [+] EMBL CD114853 [ CAACTCTTATGGGCGGCGATTTCCGTGATGAGGATGAACGTTTAATAACTCGATTAGAAAATACTCAATATGATGCCGTGGCTGCTGCTGCAGCCAATTCAGGCGTTATGGCTTCTCATATAAATTCTGGCCCTTTTCCTGGCTCTGGCGATTCGCCTGCTGGTATTATATCGTGTCCCCACTATGTTTAAGTTCAGGAGGAAATATGTTAAATTCTAA TCAACCACAGCAACAGATAAACTCCCTTCAGTTTCGTGCGGGTCCAATGTCTTCAGGTGGACCAAATCAGAGCATGCCACATGAAGGTGTTTTTCCCGGTAATCTTACTTCCCTGCAACAAAATCAACCAGTTCCTATGCCTCCTAGTCAGTCATTTTATTCGAGTTCAGCGCCAAACAGAAATTTGCATCATCACTCTCAAATGATTGGACAACAATTTATGCCAGTATTTACCAAAGCCCAAATGTCAGCTTCTAATATGCTTAATAGAGGTGATCATTATATGCCATCAGGAAATGGAGATGCCATGCATCAACCAACTCGGTCAAGTAGT ] [-] EMBL CD161114 [ TTTATGCCAGTATTTACCAAAGCCCAAATGTCAGCTTCTAATATGCTTAATAGAGGTGATCATTATATGCCATCAGGAAATGGAGATGCCATGCATCAACCAACTCGGTCAAGTAGTGCTTCGTCTTTAGTTGACGGTACGAATGGTTTGAGTGGGTTCCCTCACT GTGCCTCCCCCAGTCTTCTTCCTTCAAGACCTCCTGCGCGTTTCACCCCGCCTTCTCTTCCGAATGGGTTAGGTTCTTCGGTTGTATCATCTCAACAGTCAAGCTTTATGATGCCAAATGAAGTGATGGGCAGTGGAGGTACGCAAATGGGACATGTCTCTGTTCCCGGTACCCCTTTGACTTCCCCACTGACCTCCTCCTCTTTTGCAATGGATATGATGGATAATCAGAATGTCCTTCATTCTGCACCCTCAACTTTGATCTCTACAACTATCAAGTCAAATAATTCTCCTATGTTGTACAATTCAATCGGAACAAGCTGTAGTG ] [+] EMBL CD082119 [ ggaCT ACTNGTGCCTCCCCCAGTCTTCTTCCTTCAATATCTCCTGCGCGTTTCACCCCGCCTTCTCTTCCGAATGGGTTAGGTTCTTCGGTTGTATCATCTCAACAGTCAAGCTTTATGATGCCAAATGAAGTGATGGGCAGTGGAGGTACGCAAATGGGACATGTCTCTGTTCCCGGTACCCCTTTGACTTCCCCACTGACCTCCTCCTCTTTTGCAATGGATATGATGGATAATCAGAATGTCCTTCATTCTGCACCCTCAACTTTGATCTCTACAACTATCAAGTCAAATAATTCTCCTATGTTGTACAATTCAATCGGAACAAGCTGTAGTGGAAATCAGTCGACCCCGGAGTCTATAATGCACCCAACAATAAGTGGTATAGGATGCGATGTTTCTTCGGCTGTGATGAATGATAATGAAGATCTTAAGATGATTAATAGTAATGGCGCACCCTCACGTCCCACTGCTGCTGAATCAATGTGAATTGAGATCTCTGAAAAAAGCATCATGGATCTATACTGCATTTTGCCAAGTGGATATAATTTCCATTTTTTCACTGGCTACCAAACGAAACTAATTACGAACTTTGCACAAAGATAAACGATACTCTGCAACTTCAGCTGATCCATCCAAATACTATCTTGTTCATTGGTATTNTTTTTGTTCGACGACTAATTATTCACTAAGCATA ] [+] EMBL CD061376 [ ACAAGCTGTAGTGGAAATCAGTCGACCCCGGAGTCTATAATGCACCCAACAATAAGTGGTATAGGATGCGATGTTTCTTCGGCTGTGATGAATGATAATGAAGATCTTAAGATGATTAATAGTAATGGCGCACCCTCACGTCCCACTGCTGCTGAATCAATGTGAATTGAGATCTCTGAAGAAAGCATCATGGATCTATACTGCATTTTGCCAAGTGGATATAATTTCCATTTTTTCACTGGCTACCAAACGAAACTAA ] [-] EMBL CD075734 [ CAACAATAAGTGGTATAGGATGCGATGTTTCTTCGGCTGTGATGAATGATAATGAAGATCTTAAGATGATTAATAGTAATGGCGCACCCTCACGTCCCACTGCTGCTGAATCAATGTGAATTGAGATCTCTGAAAAAAGCATCATGGATCTATACTGCATTTTGCCAAGTGGATATAATTTCCATTTTTTCACTGGCTACCAAACGAAACTAATTACGAACTTTGCACAAAGATAAACGATACTCTGCAACTTCAGCTGATCCATCCAAATACTATCTTGTTCATTGGTATTTTTTTTGTTCGACGACTAATTATTCACTAAGCATATATATATATATATATGCCAAATCGTGAGCTCATTTTCTTCTACAAATGTTTAATTTACAATCTCTTTCATTGCCAAATAAGTAACTATTCCTTTCTCTACACTTCCCCCAGTCTTCAGTAATCCTACTTCATATTTTTATTTGTACATATTTTTTGCATATGTACCCATGAATATATATATATATATATATATATATATATATATTCAGATCGTTTCTTGTATGTTATAATTATATTTGAATA] consensusID : consensus_9728#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 317 fasta sequence [TATACTGCATNTGGCANGTGGATATAATTTCCATTTTTTCACTGGCTACCAAACGAAATATTAGACTTGNCAAGATAAACGATACTCTGCAACTTCAGCTGATCCATCCAAATACTATCTTGTTCATGGTATTTTTTTGTCGAGACTAATTATTCACTAAGCATATTATATTATATTGCAAATCGGAGCTCATATTCTTCTCAAATGTTATTTACAACTCTTCATGCAAATAGTANTATCCTTCTCTAANTCCCCCAGNCTCAGAACCTACTTCATTNTTATTGGACATTTNGAGGATATGTACCAGATATTNTTTG] [+] EMBL SM711 [TATACTGCATNTGGCANGTGGATATAATTTCCATTTTTTCACTGGCTACCAAACGAAATATTAGACTTGNCAAGATAAACGATACTCTGCAACTTCAGCTGATCCATCCAAATACTATCTTGTTCATGGTATTTTTTTGTCGAGACTAATTATTCACTAAGCATATTATATTATATTGCAAATCGGAGCTCATATTCTTCTCAAATGTTATTTACAACTCTTCATGCAAATAGTANTATCCTTCTCTAANTCCCCCAGNCTCAGAACCTACTTCATTNTTATTGGACATTTNGAGGATATGTACCAGATATTNTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9728#0 AAGGTGCAAATAATACAAGTCGAACATCAAAGCGCAAACAGTCACCTATTCCGCTACAAT 60 consensus_9728#1 ------------------------------------------------------------ consensus_9728#0 CCCATCATATTGCTCAACCTGGGGATGTGATGATAGTTGGTGAACCAACTCTTATGGGCG 120 consensus_9728#1 ------------------------------------------------------------ consensus_9728#0 GGGATTTCGGTGATGAGGATGAACGTTTAATAACTCGATTAGAAAATACTCAATATGATG 180 consensus_9728#1 ------------------------------------------------------------ consensus_9728#0 CCGTGGCTGCTGCTGCAGCCAATTCAGGCGTTATGGCTTCTCATATAAATTCTGGCCCTT 240 consensus_9728#1 ------------------------------------------------------------ consensus_9728#0 TTCCTGGCTCTGGCGATTCGCCTGCTGGTATTATATCTTCCCCACTAGGTTTAAGTTCAG 300 consensus_9728#1 ------------------------------------------------------------ consensus_9728#0 GAGGAAATATGTTAAATTCTAATCAACCACAGCAACAGATAAACTCCCTTCAGTTTCGTG 360 consensus_9728#1 ------------------------------------------------------------ consensus_9728#0 CGGGTCCAATGTCTTCAGGTGGACCAAATCAGAGCATGCCACATGAAGGTGTTTTTCCCG 420 consensus_9728#1 ------------------------------------------------------------ consensus_9728#0 GTAATCTTACTTCCCTGCAACAAAATCAACCAGTTCCTATGCCTCCTAGTCAGTCATTTT 480 consensus_9728#1 ------------------------------------------------------------ consensus_9728#0 ATTCGAGTTCAGCGCCAAACAGAAATTTGCATCATCACTCTCAAATGATGGGACAACAAT 540 consensus_9728#1 ------------------------------------------------------------ consensus_9728#0 TTATGCCAGTATTTACCAAAGCCCAAATGTCAGCTTCTAATATGCTTAATAGAGGTGATC 600 consensus_9728#1 ------------------------------------------------------------ consensus_9728#0 ATTATATGCCATCAGGAAATGGAGATGCCATGCATCAACCAACTCGGTCAAGTAGTGCTT 660 consensus_9728#1 ------------------------------------------------------------ consensus_9728#0 CGTCTTTAGTTGACGGTACGAATGGTTTGAGTGGGTTCCCTACTGTGCCTCCCCCAGTCT 720 consensus_9728#1 ------------------------------------------------------------ consensus_9728#0 TCTTCCTTCAAGACCTCCTGCGCGTTTCACCCCGCCTTCTCTTCCGAATGGGTTAGGTTC 780 consensus_9728#1 ------------------------------------------------------------ consensus_9728#0 TTCGGTTGTATCATCTCAACAGTCAAGCTTTATGATGCCAAATGAAGTGATGGGCAGTGG 840 consensus_9728#1 ------------------------------------------------------------ consensus_9728#0 AGGTACGCAAATGGGACATGTCTCTGTTCCCGGTACCCCTTTGACTTCCCCACTGACCTC 900 consensus_9728#1 ------------------------------------------------------------ consensus_9728#0 CTCCTCTTTTGCAATGGATATGATGGATAATCAGAATGTCCTTCATTCTGCACCCTCAAC 960 consensus_9728#1 ------------------------------------------------------------ consensus_9728#0 TTTGATCTCTACAACTATCAAGTCAAATAATTCTCCTATGTTGTACAATTCAATCGGAAC 1020 consensus_9728#1 ------------------------------------------------------------ consensus_9728#0 AAGCTGTAGTGGAAATCAGTCGACCCCGGAGTCTATAATGCACCCAACAATAAGTGGTAT 1080 consensus_9728#1 ------------------------------------------------------------ consensus_9728#0 AGGATGCGATGTTTCTTCGGCTGTGATGAATGATAATGAAGATCTTAAGATGATTAATAG 1140 consensus_9728#1 ------------------------------------------------------------ consensus_9728#0 TAATGGCGCACCCTCACGTCCCACTGCTGCTGAATCAATGTGAATTGAGATCTCTGAAAA 1200 consensus_9728#1 ------------------------------------------------------------ consensus_9728#0 AAGCATCATGGATCTATACTGCATTTTGCCAAGTGGATATAATTTCCATTTTTTCACTGG 1260 consensus_9728#1 --------------TATACTGCATNTGGC-ANGTGGATATAATTTCCATTTTTTCACTGG 45 ********** * ** * **************************** consensus_9728#0 CTACCAAACGAAACTAATTACGAACTTTGCACAAAGATAAACGATACTCTGCAACTTCAG 1320 consensus_9728#1 CTACCAAACGAAAT--ATTA--GACTTGNCA---AGATAAACGATACTCTGCAACTTCAG 98 ************* **** **** ** ************************** consensus_9728#0 CTGATCCATCCAAATACTATCTTGTTCATTGGTATTNTTTTTGTTCGACGACTAATTATT 1380 consensus_9728#1 CTGATCCATCCAAATACTATCTTGTTCAT-GGTATTTTTTT--GTCGA-GACTAATTATT 154 ***************************** ****** **** **** *********** consensus_9728#0 CACTAAGCATATATATATATATATATGCCAAATCGTGAGCTCATTTTCTTCTACAAATGT 1440 consensus_9728#1 CACTAAGCATAT---TATAT-TATATTGCAAATCG-GAGCTCATATTCTTCT-CAAATGT 208 ************ ***** ***** ******* ******** ******* ******* consensus_9728#0 TTAATTTACAATCTCTTTCATTGCCAAATAAGTAACTATTCCTTTCTCTACACTTCCCCC 1500 consensus_9728#1 T--ATTTACAA-CTCTT-------CATGCAAATAGTANTATCCTTCTCTAAN--TCCCCC 256 * ******** ***** ** ** ** * * ******* ****** consensus_9728#0 AGTCTTCAGTAATCCTACTTCATATTTTTATTTGTACATATTTTTTGCATATGTACCCAT 1560 consensus_9728#1 AGNCT-CAGAA--CCTACTTCA--TTNTTATTGG---ACATTTNGAGGATATGTACCAGA 308 ** ** *** * ********* ** ***** * * **** * ********* consensus_9728#0 GAATATATATATATATATATATATATATATATATATTCAGATCGTTTCTTGTATGTTATA 1620 consensus_9728#1 TATTNTTTG--------------------------------------------------- 317 * * * * consensus_9728#0 ATTATATTTGAATA 1634 consensus_9728#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||