cluster # 9732

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Schistosoma mansoni
cluster # 9732 cluster # 9732 Sequences # 11 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9732#0 length = 608 sequences # 1
consensus_9732#1 length = 493 sequences # 3

consensus_9732#2 length = 320 sequences # 5
consensus_9732#3 length = 214 sequences # 1
consensus_9732#4 length = 85 sequences # 1

consensusID : consensus_9732#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence

                              [GGCAGTCTGCACAGGATGCACATATGCCAACAAGAGACTGACCAATCGCAGTCCAAAATAACAATGGAAAGATACAAGTAAACAACAACAAATGAATCTACCCATGAATCCTAGGTATTTATTGTTTAATTAATTTTCTCTATCTAAAGCTTGCTCTTGAGAATCTATTATTAATGCAAAAACTGATGTGTAAATCATCTTACTCTAATTCTTATAATAACAGGTAATCTTGTCGTTTATTATCTGTGTTCAATTAAATAATGTTTTAAACCAACTAGTCCCTTTGATAAACTTAATAATGTAATGAGAAGAAAATTATCTGATCTGTTATCTCAGTATTATACGGCAAAGGTCATTATCATTGAAAAAACAAAATCCATCCTTTACCAAAAGCTCAAACATTTAAATGTCCCACGGTGTCTATCACTTTGCATATTGTGTGTGGCTTTACATACATTGCAAGTCAGAGTATCGGAGCATGTATCTAAATGGCCACAGAAACAAATCAAGCCAAATAACCCAACCAGGAGTAGATGACAAACATTCAACTTCCTCCACTGCTAGACACATAGTTGAAACAGGTCATATAATTGATCAGAATAAGCTTT]

[+] EMBL BF936708             [GGCAGTCTGCACAGGATGCACATATGCCAACAAGAGACTGACCAATCGCAGTCCAAAATAACAATGGAAAGATACAAGTAAACAACAACAAATGAATCTACCCATGAATCCTAGGTATTTATTGTTTAATTAATTTTCTCTATCTAAAGCTTGCTCTTGAGAATCTATTATTAATGCAAAAACTGATGTGTAAATCATCTTACTCTAATTCTTATAATAACAGGTAATCTTGTCGTTTATTATCTGTGTTCAATTAAATAATGTTTTAAACCAACTAGTCCCTTTGATAAACTTAATAATGTAATGAGAAGAAAATTATCTGATCTGTTATCTCAGTATTATACGGCAAAGGTCATTATCATTGAAAAAACAAAATCCATCCTTTACCAAAAGCTCAAACATTTAAATGTCCCACGGTGTCTATCACTTTGCATATTGTGTGTGGCTTTACATACATTGCAAGTCAGAGTATCGGAGCATGTATCTAAATGGCCACAGAAACAAATCAAGCCAAATAACCCAACCAGGAGTAGATGACAAACATTCAACTTCCTCCACTGCTAGACACATAGTTGAAACAGGTCATATAATTGATCAGAATAAGCTTT]




>consensus_9732#0
GGCAGTCTGCACAGGATGCACATATGCCAACAAGAGACTGACCAATCGCAGTCCAAAATA
ACAATGGAAAGATACAAGTAAACAACAACAAATGAATCTACCCATGAATCCTAGGTATTT
ATTGTTTAATTAATTTTCTCTATCTAAAGCTTGCTCTTGAGAATCTATTATTAATGCAAA
AACTGATGTGTAAATCATCTTACTCTAATTCTTATAATAACAGGTAATCTTGTCGTTTAT
TATCTGTGTTCAATTAAATAATGTTTTAAACCAACTAGTCCCTTTGATAAACTTAATAAT
GTAATGAGAAGAAAATTATCTGATCTGTTATCTCAGTATTATACGGCAAAGGTCATTATC
ATTGAAAAAACAAAATCCATCCTTTACCAAAAGCTCAAACATTTAAATGTCCCACGGTGT
CTATCACTTTGCATATTGTGTGTGGCTTTACATACATTGCAAGTCAGAGTATCGGAGCAT
GTATCTAAATGGCCACAGAAACAAATCAAGCCAAATAACCCAACCAGGAGTAGATGACAA
ACATTCAACTTCCTCCACTGCTAGACACATAGTTGAAACAGGTCATATAATTGATCAGAA
TAAGCTTT

consensusID : consensus_9732#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 493
fasta sequence

                              [AGGTGGCTCGACACTGCGTGCACTATGTTGAGATAAGATGGTGGATGGAGGTGGTCAACAGGAAACCCTGGACTCGGGTTTCGTGCTACTTGGCACTCGTCAGCAAGGTGTACCTGTAATCTTCAGCCAACTGGTGCTCCCTGACCGATTCGATCCCGTGTCACCCAGCTTCACAGTCACAGACGTTACCACTGAGCTATTCGCGCCGCCACCGACCTCCCGTACGACTGAGATGTAATCACAATGACACTGATCACTGGGTGGTGATCAATGTCATGCGTGTCAAGTCCGTCTTAGTGCTGATCGAATGCTATCGATCAAGTTGCAATGTGGCCACTAGTCTAGGTGGCTCGACACTGCGTGCACTATGTTGAGATAAGATGGTGGTTGGAGGTGGTCAACAGGAAACCCTGGACTCGGGTTTCGTGCTACTTGGCACTCGTCAGCAAGGTGTACCTGTAATCTTCAGCCAACTGGTGCTCCCTGACCGATT]

[+] EMBL CD093901             [AGGTGGCTCGACACTGCGTGCACTATGTTGAGATAAGATGGTGGATGGAGGTGGTCAACAGGAAACCCTGGACTCGGGTTTCGTGCTACTTGGCACTCGTCAGCAAGGTGTACCTGTAATCTTGAGCCAACTGGTGCTCCCTGACCGATTCGATCCCGTGTCACCCAGCTTCACAGTCACAGACGTTACCACTGAGCTATTCGCGCCGGCAACGAGCTCCCGTACGACTGAGATGTAATCACAATGACACTGATCACTGGGTGGCGATCAATGTCATGCGTGTCAAGTCCGTCTTAGTGCTGATCGAATGCTATCGATCAAGTTGCAATGTGGCCACTAGTCTAGGTGGCTCGACACTGCGTGCACTATGTTGAGATAAGATGGTGGTTGGAGGTGGTCAACAGGAAACCCTG                                                                                ]
[-] EMBL CD093881             [                                                                         TCGGGTTTCGTGCTACTTGGCACTCGTCAGCAAGGTGTACCTGTAATCTTCAGCCAACTGGTGCTCCCTGACCGATTCGATCCCGGGTCACCCAGCTTCACAGTCACAGACGTTACCACTGAGCTATTCGCGCCGCGACCGACCTCCCGTACGACTGAGATGTAATCACAATGGCACTGGTCACTGGGTGGTGATCAATGTCATGCGTGTCAAGTCCGTCTTAGTGCTGATCGAATGCCATCGATCAAGTTGCAATGTGGCCACTAGTCTAGGTGGCTCGACACTGCGTGCACTATGTTGAGATAAGATGGTGGTTGGAGGTGGTCAACAGGAAACCCTGGACTCGGGTTTCGTGCTACTTGGCACTCGTCAGCAAGGTGTACCTG                                  ]
[-] EMBL CD187132             [                                                                           GGGTTTCGTGCTACTTGGCACTCGTCAGCAAGGTGTACCTGTAATCTTCAGCCAACTGGTGCTCCCTGACCGATTCGATCCCGTGTCACCCAGCTTCACAGTCACAGACGTTACCACTGAGCTATTCGCGCCGCCACCGACCTCCCGTACGACTGAGATGTAATCACAATGACACTGATCACTGGGTGGTGATCAATGTCATGCGTGTCAAGTCCGTCTTAGTGCTGATCGAATGCTATCGATCAAGTTGCAATGTGGCCACTAGTCTAGGTGGCTCGACACTGCGTGCACTATGTTGAGATAAGATGGTGGTTGGAGGTGGTCAACAGGAAACCCTGGACTCGGGTTTCGTGCTACTTGGCACTCGTCAGCAAGGTGTACCTGTAATCTTCAGCCAACTGGTGCTCCCTGACCGATT]




>consensus_9732#1
AGGTGGCTCGACACTGCGTGCACTATGTTGAGATAAGATGGTGGATGGAGGTGGTCAACA
GGAAACCCTGGACTCGGGTTTCGTGCTACTTGGCACTCGTCAGCAAGGTGTACCTGTAAT
CTTCAGCCAACTGGTGCTCCCTGACCGATTCGATCCCGTGTCACCCAGCTTCACAGTCAC
AGACGTTACCACTGAGCTATTCGCGCCGCCACCGACCTCCCGTACGACTGAGATGTAATC
ACAATGACACTGATCACTGGGTGGTGATCAATGTCATGCGTGTCAAGTCCGTCTTAGTGC
TGATCGAATGCTATCGATCAAGTTGCAATGTGGCCACTAGTCTAGGTGGCTCGACACTGC
GTGCACTATGTTGAGATAAGATGGTGGTTGGAGGTGGTCAACAGGAAACCCTGGACTCGG
GTTTCGTGCTACTTGGCACTCGTCAGCAAGGTGTACCTGTAATCTTCAGCCAACTGGTGC
TCCCTGACCGATT

consensusID : consensus_9732#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 320
fasta sequence

                              [CTTCTTAGTGCAGATCGAATGCTATCGATCAAGTTGTAATGTGGCCACTAGTCTAGATG-GCTCAACACTGCCTGCACTATGTTGAGATAATATGGTGATTGGAGTTAGTCAACAGAAAACCCTGGACCCAAGTTTCGTACTATTAGGAGCTCATCAGCAAGGTGTACCTGTAATCATAAGGAAACTAGTGCACCCTGACAGATTAAATCCCGTGTCACCCAGCTTCACTGTCAGAGACGTTACCACTGAGCTATCCAGG-CCGCAACCGAGTTCCTGTGGGATTGAGATGGGGGCGCCAAATCTATTTATTC-AACACATAA]

[+] EMBL CD072672             [CTTCTTAGTGCAGATCGAATGCTATCGATCAAGTTGTAATGTGGCCACTAGTCTAGATG GCTCAACACTGCCTGCACTATGTTGAGATAATATGGTGATTGGAGTTAGTCAACAGAAAACCCTGGACCCAAGTTTCGTACTATTAGGAGCTCATCAGCAAGGTGTACCTGTAATCATAAGGAAACTAGTGCACCCTGACAGATTANATCCCGTGTCACCCAGCTTCACTGTCAGAGACGTTACCACTGAGCTATCCAGG CCGCAACCGAGTTCCTGTGGGATTGAGATGGGGGCGCCAAATCTATTTATTC AACACATAA]
[+] EMBL CD072645             [CTTCTTAGTGCAGATCGAATGCTATCGATCAAGTTGTAATGTGGCCACTAGTCTAGATGAGCTCAACACTGCCTGCACTATGTTGAGATAATATGGTGATTGGAGTTAGTCAACAGAAAACCCTGGACCCAAGTTTCGTACTATTAGGAGCTCATCAGCAAGGTGTACCTGTAATCATAAGGAAACTAGTGCACCCTGACAGATTAAATCCCGTGTCACCCAGCTTCACTGTCAGAGACGTTACCACTGAGCTATCCAGG CCGCAACCGAGTTCCTGTGGGATTGAGATGGGGGCGCCAAATCTATTTATTCAAACAC    ]
[+] EMBL CD072581             [CTTCTTAGTGCAGATCGAATGCTATCGATCAAGTTGTAATGTGGCCACTAGTCTAGATG GCTCAACACTGCCTGCACTATGTTGAGATAATATGGTGATTGGAGTTAGTCAACAGAAAACCCTGGACCCAAGTTTCGTACTATTAGGAGCTCATCAGCAAGGTGTACCTGTAATCATAAGGAAACTAGTGCACCCTGACAGATTAAATCCCGTGTCACCCAGCTTCACTGTCAGAGACGTTACCACTGAGCTATCCAGG CCGCAACCGAGTTCTTGTGGGATTGAG                                   ]
[+] EMBL CD072618             [CTTCTTAGTGCAGATCGAATGCTATCGATCAAGTTGTAATGTGGCCACTAGTCTAGATG GCTCAACACTGCCTGCACTATGTTGAGATAATATGGTGATTGGAGTTAGTCAACAGAAAACCCTGGACCCAAGTTTCGTACTATTAGGAGCTCATCAGCAAGGTGTACCTGTAATCATAAGGAAACTAGTGCACCCTGACAGATTAAATCCCGTGTCACCCAGCTTCACTGTCAGAGACGTTACCACTGAGCTATCCAGGCCCGC ACCGAGTTCCTGTGNGATT                                      ]
[+] EMBL CD072615             [CTTCTTAGTGCAGATCGAATGCTATCGATCAAGTTGTAATGTGGCCACTAGTCTAGATG GCTCAACACTGCCTGCACTATGTTGAGATAATATGGTGATTGGAGTTAGTCAACAGAAAACCCTGGACCCAAGTTTCGTACTATTAGGAGCTCATCAGCAAGGTGTACCTGTAATCATAAGGAAACTAGTGCACCCTGACAGATTANATCNCGTGTCACCCAGCTTCACTGTCAGAGACGTTACCACTGAGCT                                                                      ]




>consensus_9732#2
CTTCTTAGTGCAGATCGAATGCTATCGATCAAGTTGTAATGTGGCCACTAGTCTAGATGG
CTCAACACTGCCTGCACTATGTTGAGATAATATGGTGATTGGAGTTAGTCAACAGAAAAC
CCTGGACCCAAGTTTCGTACTATTAGGAGCTCATCAGCAAGGTGTACCTGTAATCATAAG
GAAACTAGTGCACCCTGACAGATTAAATCCCGTGTCACCCAGCTTCACTGTCAGAGACGT
TACCACTGAGCTATCCAGGCCGCAACCGAGTTCCTGTGGGATTGAGATGGGGGCGCCAAA
TCTATTTATTCAACACATAA

consensusID : consensus_9732#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 214
fasta sequence

                              [TCCCTGATTGACTGTGGGGACTGGAACGTCTACGGGGTGACCTGCGAGAGTCCCTGTCTCGTGACCTAGATCTGCGACGGGGAGAGTGTGATGGTGAGCGCCTACGTTTGAGGTTTTCTTGTTCTGGTTTTTGATGTTGATCACCTGGACTACTATCCTTTTCATTCGCTAACTAACAAAATTACCAACGGACATGAACCACTTACCCCATTCT]

[+] EMBL CD063495             [TCCCTGATTGACTGTGGGGACTGGAACGTCTACGGGGTGACCTGCGAGAGTCCCTGTCTCGTGACCTAGATCTGCGACGGGGAGAGTGTGATGGTGAGCGCCTACGTTTGAGGTTTTCTTGTTCTGGTTTTTGATGTTGATCACCTGGACTACTATCCTTTTCATTCGCTAACTAACAAAATTACCAACGGACATGAACCACTTACCCCATTCT]




>consensus_9732#3
TCCCTGATTGACTGTGGGGACTGGAACGTCTACGGGGTGACCTGCGAGAGTCCCTGTCTC
GTGACCTAGATCTGCGACGGGGAGAGTGTGATGGTGAGCGCCTACGTTTGAGGTTTTCTT
GTTCTGGTTTTTGATGTTGATCACCTGGACTACTATCCTTTTCATTCGCTAACTAACAAA
ATTACCAACGGACATGAACCACTTACCCCATTCT

consensusID : consensus_9732#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 85
fasta sequence

                              [TGCTTCCTGACGGATTCGATCCCGTGTCACTCAGCTTCACAGTCACAGACGTTACCACTGAGCTATTCGGGCCGTATCCGGCCTT]

[+] EMBL CD115791             [TGCTTCCTGACGGATTCGATCCCGTGTCACTCAGCTTCACAGTCACAGACGTTACCACTGAGCTATTCGGGCCGTATCCGGCCTT]




>consensus_9732#4
TGCTTCCTGACGGATTCGATCCCGTGTCACTCAGCTTCACAGTCACAGACGTTACCACTG
AGCTATTCGGGCCGTATCCGGCCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9732#1      ------------------------------------------------------------
consensus_9732#4      ------------------------------------------------------------
consensus_9732#2      ----------------------------------------CTTCTTAGTGCAGATCGAAT 20
consensus_9732#3      ------------------------------------------------------------
consensus_9732#0      GGCAGTCTGCACAGGATGCACATATGCCAACAAGAGACTGACCAATCGCAGTCCAAAATA 60
                                                                                  

consensus_9732#1      ----------------------------------AGGTGGCTCGACACTGCGTGCACTAT 26
consensus_9732#4      ------------------------------------------------------------
consensus_9732#2      GCTATCGATCAAGTTGTAATGTGGCCACTAGTCTAGATGGCTCAACACTGCCTGCACTAT 80
consensus_9732#3      ------------------------------------------------TCCCTGATTGAC 12
consensus_9732#0      ACAATGGAAAGATACAAGTAAACAACAACAAATGAATCTACCCATGAATCCTAGGTATTT 120
                                                                                  

consensus_9732#1      GTTGAGATAAGATGGTGGATGGAGGTGGTCAA---CAGGAAACCCTGGACTCGGGTTTCG 83
consensus_9732#4      ------------------------------------------------------------
consensus_9732#2      GTTGAGATAATATGGTGATTGGAGTTAGTCAA---CAGAAAACCCTGGACCCAAGTTTCG 137
consensus_9732#3      TGTGGGGACTGGAACGTCTACGGGGTGACCTG---CGAGAGTCCCTGTCTCGTGACCTAG 69
consensus_9732#0      ATTGTTTAATTAATTTTCTCTATCTAAAGCTTGCTCTTGAGAATCTATTATTAATGCAAA 180
                                                                                  

consensus_9732#1      TGCTACTTGGCACTCGTCAGCAAGGTGTACCTGTAATCTTCAGCCAA-CTGGT--GCTCC 140
consensus_9732#4      ----------------------------------------------------T--GCTTC 6
consensus_9732#2      TACTATTAGGAGCTCATCAGCAAGGTGTACCTGTAATCATAAGGAAA-CTAGT--GCACC 194
consensus_9732#3      ATCTGCGACGGGGAGAGTGTGATGGTGAGCGCCTACGTTTGAGGTTTTCTTGT--TCTGG 127
consensus_9732#0      AACTGATGTGTAAATCATCTTACTCTAATTCTTATAATAACAGGTAATCTTGTCGTTTAT 240
                                                                          *       

consensus_9732#1      CTGACCGATTCGATCCCGTG--TCACCCAGCTTCACAGTC------ACAGACGTTACCAC 192
consensus_9732#4      CTGACGGATTCGATCCCGTG--TCACTCAGCTTCACAGTC------ACAGACGTTACCAC 58
consensus_9732#2      CTGACAGATTAAATCCCGTG--TCACCCAGCTTCACTGTC------AGAGACGTTACCAC 246
consensus_9732#3      TTTTTGATGTTGATCACCTGGACTACTATCCTTTTCATTCGCT--AACTAACAAAATTAC 185
consensus_9732#0      TATCTGTGTTCAATTAAATAATGTTTTAAACCAACTAGTCCCTTTGATAAACTTAATAAT 300
                               *  **    *           *       **      *   **   *  * 

consensus_9732#1      TGAGCTATTCGCGCCGCCACCGACCTCCCGTACGACTGAGATGTAATCACAATGACACTG 252
consensus_9732#4      TGAGCTATTCGGGCCGTATCCGGCCTT--------------------------------- 85
consensus_9732#2      TGAGCTATCCAGGCCGCAACCGAGTTCCTGTGGGATTGAGATGGGGGCGCCA--AATCTA 304
consensus_9732#3      CAACGGACATGAACCACTTACCCCATTCT------------------------------- 214
consensus_9732#0      GTAATGAGAAGAAAATTATCTGATCTGTTATCTCAGTATTATACGGCAAAGGTCATTATC 360
                        *   *                  *                                  

consensus_9732#1      ATCACTGGGTGGTGATCAATGTCATGCGTGTCAAGTCCGTCTTAGTGCTGATCGAATGCT 312
consensus_9732#4      ------------------------------------------------------------
consensus_9732#2      TTTATTCAACACATAA-------------------------------------------- 320
consensus_9732#3      ------------------------------------------------------------
consensus_9732#0      ATTGAAAAAACAAAATCCATCCTTTACCAAAAGCTCAAACATTTAAATGTCCCACGGTGT 420
                                                                                  

consensus_9732#1      ATCGATCAAGTTGCAATGTGGCCACTAGTCTAGGTGGCTCGACACTGCGTGCACTATGTT 372
consensus_9732#4      ------------------------------------------------------------
consensus_9732#2      ------------------------------------------------------------
consensus_9732#3      ------------------------------------------------------------
consensus_9732#0      CTATCACTTTGCATATTGTGTGTGGCTTTACATACATTGCAAGTCAGAGTATCGGAGCAT 480
                                                                                  

consensus_9732#1      GAGATAAGATGGTGGTTGGAGGTGGTCAACAGGAAACCCTGGACTCGGGTTTCGTGCTAC 432
consensus_9732#4      ------------------------------------------------------------
consensus_9732#2      ------------------------------------------------------------
consensus_9732#3      ------------------------------------------------------------
consensus_9732#0      GTATCTAAATGGCCACAGAAACAAATCAAGCCAAATAACCCAACCAGGAGTAGATGACAA 540
                                                                                  

consensus_9732#1      TTGGCACTCGTCAGCAAGGTGTACCTGTAATCTTCAGCCAACTGGTGCTCCCTGACCGAT 492
consensus_9732#4      ------------------------------------------------------------
consensus_9732#2      ------------------------------------------------------------
consensus_9732#3      ------------------------------------------------------------
consensus_9732#0      ACATTCAACTTCCTCCACTGCTAGACACATAGTTGAAACAGGTCATATAATTGATCAGAA 600
                                                                                  

consensus_9732#1      T------- 493
consensus_9732#4      --------
consensus_9732#2      --------
consensus_9732#3      --------
consensus_9732#0      TAAGCTTT 608