These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9733#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 767 fasta sequence [GAACAACTTA-TGCTTTTAGATAAGTCTCGTGAAGCCCGAGAATCAGTGATTGAGGCTCGAAAACAACGAATCACTAAACTGAAATTACTTCTTGAAAGAGTAATGAGTCAGTTGGAAAATAATCGTACTAGCGAAACAGACAATGGTACAGATTCAAAACCACTGACATTGGATGAAAGACGGAAATTACTTACTGAAGCCAAACGGCTACAAATTGAGCT-TGAATCAACTTTGGAAGCTGAGAAGAAAGATTTGGATATCCGAAG-TTCAAACCGAGAATCAAACAG-CAAAAAAATATTCACTTCAAAACCATTAGGAAGCACAACAATTAGCGCGGCTGCATTACAAGCATTACCGAGTCCAATTAGATTAGAAAGACAAAAACAAATCTCTGAAATTCAAATCGAAATCGATAAATTGGAAGCAAATCTACGTGAGGCTACTCATGATGATGTTAAATTAAAAGAAGGTCGTCGAAGGATTGTAGAACTTAAGCGCCAGCTTGTCGACTTGGAGACAGTCCGGCCTTCAGATATGTTTTTGTCTCAAAACAC-AAGCGGTTGTGCTCCTGGCGACAATGCCGCATACCCGAACAGAACTCAAACCAAACTTGATAAGCGACCTCGAACTTTGTATATTACTGGCATCGAATCAGATGATGTAGAAAACTTTCAGAATGCCCTCTCACTAAATTACTTGCATACACAATCTTGTACAAAACAAACTAACCCCGAAACTAATCAGTTAGTGCTGGAAGTTACGTNTTG] [+] EMBL CD110827 [GAACAACTTA TGCTTTTAGATAAGTCTCGTGAAGCCCGAGAATCAGTGATTGAGGCTCGAAAACAACGAATCACTAAACTGAAATTACTTCTTGAAAGAGTAATGAGTCAGTTGGAAAATAATCGTACTAGCGAAACAGACAATGGTACAGATTCAAAACCACTGACATTGGATGAAAGACGGAAATTACTTACTGAAGCCAAACGGCTACAAATTGAGCT TGAATCAACTTTGGAAGCTGAGAAGAAAGATTTGGATATCCGAAG TTCAAACCGAGAGTCAAACAG CAAAAAAATATTCACTTCAAAACCATTAGGAAGCACAACAATTAGCGCGGCTGCATTACAAGCATTACCGAGTCCAATTAGATTAGAAAGACAAAAACAAATCTCTGAAATTCAAATCGAAATCGATAAATTGGAAGCAAATCTACGTGAGGCTACTCATGATGATGTTAAATTAAAAGAAGGTCGTCGAAGGATTGTAGAACTTAAGCGCCAGCTTGTCGACTTGGAGACAGTCCGGCCTTCAGATATGTTTTTGTCTCANAACACAAAGC GTTGTGCTCCTGGCGACAGTGCCGCATACCCGAACAGAACTCAAACCAAACTTGATAAGCGACCTCGAACTTTGTATATTACTGGCATCGAATCAGATGATGTAGAAAACTTT ] [+] EMBL CD111860 [GAACAACTTA TGCTTTTAGATAAGTCTCGTGAAGCCCGAGAATCAGTGATTGAGGCTCGAAAACAACGAATCACTAAACTGAAATTACTTCTTGAAAGAGTAATGAGTCAGTTGGAAAATAATCGTACTAGCGAAACAGACAATGGTACAGATTCAAAACCACTGACATTGGATGAAAGACGGAAATTACTTACTGTAGCCAAACGGCTACAAATTGAGCT TGAATCAACTTTGGAAGCTGAGAAGAAAGATTTGGATATCCGAAGnt ] [+] EMBL CD111991 [GAACAACTTATTGCTTTTAGATAAGTCTCGGGAAGCCCGAGAATCAGAGATTGAGGCTCGAAAACAACGAATCACTAATCTGAAATTACTTCTTGAAAGAGTAATGAGTCAGTTGGAAAATAATCGTACTAGCGAAACAGACAATGGTACAGATTCAAAACCACTGACATTGG ] [+] EMBL CD111932 [GAACAACTTA TGCTTTTAGATAAGTCTCGTGAAGCCCGAGAATCAGTGATTGAGGCTCGAAAACAACGAATCACTAAACTGAAATTACTTCTTGAAAGAGTAATGAGTCAGTTGGAAAATAATCGTACTAGCGAAACAGACAATGGTACAGATTCAAAACCACTGACATTGGATGAAAGACGGAAATTACTTACTGAAGCCAAACGGCTACAAATTGAGCT TGAATCAACTTTGGAAGCTGAGAAGAAAGATTTGGATATCCGAAG TTCAAACCGAGAATCAAACAG CAAAAAAATATTCACTTCAAAACCATTAGGAAGCACAACAATTAGCGCGGCTGCATTACAAGCATTACCGAGTCCTATTAGATTAGAAAGAC AAAACATATCTCTGAAA TCTAATCG AATCGATAA ] [+] EMBL CD111814 [GAACAACTTA TGCTTTTAGATAAGTCTCGTGAAGCCCGAGAATCAGTGATTGAGGCTCGAAAGCAACGAATCACTAAACTGAAATTACTTCTTGAAAGAGTAATGAGTCAGTTGGAAAATAATCGTACTAGCGAAACAGACAATGGTACAGATTCAAAACCACTGACATTGGATGAAAGACGGAAATTACTTACTGAAGCCAAACGGCTACAAATTGAGCT TGAATCAACTTTGGAAGCTGAGAAGAAAGATTTGGATATCCGAAG TTCAAACCGAGAATCAAACAGNCAAAAAAt ] [+] EMBL CD111953 [GAACAACTTA TGCTTTTAGATAAGTCTCGTGAAGCCCGAGAATCAGTGATTGAGGCTCGAAAACAACGAATCACTAAACTGAAATTACTTCTTGAAAGAGTAATGAGTCAGTTGGAAAATAATCGTACTAGCGAAACAGACAATGGTACAGATTCAAAACCACTGACATTGGATGAAAGACGGAAATTACTTACTGAAGCCAAACGGCTACAAATTGAGCT TGAATCAACTTTGGAAGCTGAGAAGAAAGATTTGGATATCCGAAGNTTC AACCG ] [+] EMBL CD132865 [ ACGGAAATTACTTACTGAAGCCAAACGGCTACAAATTGAGCT TGAATCAACTTTGGAAGCTGAGAAGAAAGATTTGGATATCCGAAG TTCAAACCGAGAATCAAACAG CAAAAAAATATTCACTTCAAAACCATTAGGAAGCACAACAATTAGCGCGGCTGCATTACAAGCATTACCGAGTCCAATTAGATTAGAAAGACAAAAACAAATCTCTGAAATTCAAATCGAAATCGATAAATTGGAAGCAAATCTACGTGAGGCTACTCATGATGATGTTAAATTAAAAGAAGGTCGTCGAAGGATTGTAGAACTTAAGCGCCAGCTTGTCGACTTGGAGACAGTCCGGCCTTCAGATATGTTTTTGTCTCAAAACAC AAGCGGTTGTGCTCCTGGCGACA ] [-] EMBL CD111972 [ GGCTACAAA TGAGCTGAAAATCANCTTT GAAGCTGAGAAGAAAGATTT GATATCCGAAG TTCAAACCGAGAATCAAACAG CAAAAAAATATTCACTTCAAAACCATTAGGAAGCACAACAATTAGCGCGGCTGCATTACAAGCATTACCGAGTCCAATTAGATTAGAAAGACAAAAACAAATCTCTGAAATTCAAATCGAAATCGATAAATTGGAAGCAAATCTACGTGAGGCTACTCATGATGATGTTAAATTAAAAGAAGGTCGTCGAAGGATTGTAGAACTTAAGCGCCAGCTTGTCGACTTGGAGACAGTCCGGCCTTCAGATATGTTTTTGTCTCAAAACAC AAGCGGTTGTGCTCCTGGCGACAATGCCGCATACCCGAACAGAACTCAAACCAAACTTGATAAGCGACCTCGAACTTTGTATATTACTGGCATCGAATCAGATGATGTAGAAAACTTTC ] [-] EMBL CD195622 [ TTCAAACCGAGAATCAAACAG CAAAAAAATATTCACTTCAAAACCATTAGGAAGCACAACAATTAGCGCGGCTGCATTACAAGCATTTCCGAGTCCAATTAGATTAGAAAGACAAAAACAAATCTCTGAAATTCAAATCGAA ] [+] EMBL CD152182 [ CATTAGGAAGCACAACAATTAGCGCGGCTGCATTACAAGCATTACCGAGTCCAATTAGATTAGAAAGACAAAGACAAATCTCTGAAATTCAAATCGAAATCGATAAATTGGAAGCAAATCTACGTGAGGCTACTCATGATGATGTTAAATTAAAAGAAGGTCGTCGAAGGATTGTAGAACTTAAGCGCCAGCTTGTCGACTTGGAGACAGTCCGGCCTTCAGATATGTTTTTGTCTCAAAACAC AAGCGGTTGTGCTCCTGGCGACAATGCCGCATACCCGAACAGAACTCAAACCAAACTTGATAAGCGACCTCGAACTTTGTATATTACTGGCATCGAATCAGATGATGTAGAAAACTTTCAGAATGCCCTCTCACTAAATTACTTGCATACACAATCTTGTACAAAACAAACTAACCCCGAAACTAATCAGTTAGTGCTGGAAGTTACGTNTTG] consensusID : consensus_9733#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 157 fasta sequence [GAAGCCAAACGGCTACAAATTGAGCTTGAATCAACTTTGGAAGCTGAGAAGAAAGATTTGGATATCCGAGTTCAAACCGAGAATCAAACAGAGCCGCCTATTCACTTCAAACCATTAGGAAGCACACATTAGGAGCACACATTAGCGCGGCTCATTA] [+] EMBL SMAA69261 [GAAGCCAAACGGCTACAAATTGAGCTTGAATCAACTTTGGAAGCTGAGAAGAAAGATTTGGATATCCGAGTTCAAACCGAGAATCAAACAGAGCCGCCTATTCACTTCAAACCATTAGGAAGCACACATTAGGAGCACACATTAGCGCGGCTCATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9733#0 GAACAACTTATGCTTTTAGATAAGTCTCGTGAAGCCCGAGAATCAGTGATTGAGGCTCGA 60 consensus_9733#1 ------------------------------------------------------------ consensus_9733#0 AAACAACGAATCACTAAACTGAAATTACTTCTTGAAAGAGTAATGAGTCAGTTGGAAAAT 120 consensus_9733#1 ------------------------------------------------------------ consensus_9733#0 AATCGTACTAGCGAAACAGACAATGGTACAGATTCAAAACCACTGACATTGGATGAAAGA 180 consensus_9733#1 ------------------------------------------------------------ consensus_9733#0 CGGAAATTACTTACTGAAGCCAAACGGCTACAAATTGAGCTTGAATCAACTTTGGAAGCT 240 consensus_9733#1 ---------------GAAGCCAAACGGCTACAAATTGAGCTTGAATCAACTTTGGAAGCT 45 ********************************************* consensus_9733#0 GAGAAGAAAGATTTGGATATCCGAAGTTCAAACCGAGAATCAAACAGCAAAAAAATATTC 300 consensus_9733#1 GAGAAGAAAGATTTGGATATCCGA-GTTCAAACCGAGAATCAAACAG-AGCCGCCTATTC 103 ************************ ********************** * ***** consensus_9733#0 ACTTCAAAACCATTAGGAAGCACAACAATTAGCGCGGCTGCATTACAAGCATTACCGAGT 360 consensus_9733#1 ACTTCAAA-CCATTAGGAAGCACAC--ATTAGGA----------GCACACATTAGCGCGG 150 ******** *************** ***** ** ***** ** * consensus_9733#0 CCAATTAGATTAGAAAGACAAAAACAAATCTCTGAAATTCAAATCGAAATCGATAAATTG 420 consensus_9733#1 CTCATTA----------------------------------------------------- 157 * **** consensus_9733#0 GAAGCAAATCTACGTGAGGCTACTCATGATGATGTTAAATTAAAAGAAGGTCGTCGAAGG 480 consensus_9733#1 ------------------------------------------------------------ consensus_9733#0 ATTGTAGAACTTAAGCGCCAGCTTGTCGACTTGGAGACAGTCCGGCCTTCAGATATGTTT 540 consensus_9733#1 ------------------------------------------------------------ consensus_9733#0 TTGTCTCAAAACACAAGCGGTTGTGCTCCTGGCGACAATGCCGCATACCCGAACAGAACT 600 consensus_9733#1 ------------------------------------------------------------ consensus_9733#0 CAAACCAAACTTGATAAGCGACCTCGAACTTTGTATATTACTGGCATCGAATCAGATGAT 660 consensus_9733#1 ------------------------------------------------------------ consensus_9733#0 GTAGAAAACTTTCAGAATGCCCTCTCACTAAATTACTTGCATACACAATCTTGTACAAAA 720 consensus_9733#1 ------------------------------------------------------------ consensus_9733#0 CAAACTAACCCCGAAACTAATCAGTTAGTGCTGGAAGTTACGTNTTG 767 consensus_9733#1 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||