These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9737#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1546 fasta sequence [GATTCACTAGAGAACAATTCCACTTCTATTATGTACCTAGTATTATGTAGTCGTGTTTCATTATTAATAACTAAATATTCCACACTTAGGTTCACGCAATTCATGTCGCTATTTAAATTCTAGCAGAATCGGACTTCGATAACTTCCAATCATATTTCATTTTGGGAAA-TAT-GA-T-TACATTGTAAA-GACT-GGGGGATGGTT-TT-CGGCTCG-TGCTTAGGATCTGCA-GCATTGAAAACTATTCGACCTGTTGGATTTCATGTACATTTTCCGAGGTACCTACTTACCTCATCCAAATCAACATCAGTATCCGTCCCAGTCAGTCAGGCAACAACTCGGGCCTCACCAATTGTTGGTCGATGGCTCTTGGGTCTTTCTGGCATGACTTTTGGTGCTATTTTGCTTGGTGGAGTTACAAGATTGACCGAGTCTGGTCTCTCAATGGTTGACTGGCATCCGTTTAAGGAGGTACCTCCTTTCAGTGAAGAACATTGGCGACTAGAATTCGAAAAATACAAGAAGTTCCCAGAACATGAACACTATGTAAAGGAGCGTGGAGAAATGTCAATCACTCAATTCAAGTTTATATGGTATATGGAATTTATTCACCGAATGTGGGGTCGGACGATCGGTGCTGCTTTTGTTTTCCCAGCAATCTATTTTTTTTACAGAGGTTATTTCTCTCCAGTCATGAAATCTCGCGTTTTTATTTATGCAGGACTAATTGGATTTCAGGGTGTTTTGGGCTGGCTTATGGTACGCAGTGGTCTCAAAGAACCTAGACGACCGGCAGGTCTTCCACCAAATGAGAATTATA-TTGGTGTTCCACGTGTGGATCATTATTGGCTNTGTGCTCATTTGGTTTCAGCGATTATTCTATATTCATTACTTCTGTGGGGTAGCCTTAACCATCTGGCTTCTCATTCTTTAGTTAAACCATTCAGCAGCGTCAAACGACTTAAGGCATATGGTCATATGGGTAAAGCTCTAACGTTCGCAACCATAATTTATGGTGCTTTTGTTGCCGGTCTTGATGCAGGATTAATCTATAATTCATGGCCAAAAATGGCTGATAAGTGGATTCCTGATGATTTAATTGTATCTCGTTATGGTTCTACTGTGAGAAACTTTTTGGACAATCCAACTACAGTTCAATTTATTCATCGGATGCTAGCTTATACAACAGTTNTAACCACAGGATTATTGTGGGTAAATGTCATGCGTTTAGGTGTAGCATGTACAGGACCACGTATTANGAATGCTGCACACTTGGTTTGGGGTGCTGTATTAGGACAGTCATTACTTGGCATAACAACTTTATTATGTTATGTACCAGTTTCATTGGGATCATTGCATCAATGCGGTGGTGTTGTTTTGCTTTCATCCTTACTCTGGTTTACTCATTGTTTACGTGCTGTTCCAAAATAAAAACTTGCTAACACTTTTTTTGTGGGAAGCAATTGCAACTTTTTTTCATCATCTCATTCATTTTCTAGATGTTCCATTATAATCATTGTCAATATAATCTTTATAAATATAATGCACAAAG] [-] EMBL CD170921 [GATTCACTAGAGAACAATTCCACTTCTATTATGTACCTAGTATTATGTAGTCGTGTTTCATTATTAATAACTAAATATTCCACACTTAGGTTCACGCAATTCATGTCGCTATTTAAATTCTAGCAGAATCGGACTTCGATAACTTCCAATCATATTTCATTTTGGGAAATTATAGA T TACATTGTAAA GACT GGGGGATGGTT TT CGGCTCG TGCTTAGGATCTGCA GCATTGAAAACTATTCGACCTGTTGGATTTCATGTACATTTTCCGAGGTACCTACTTACCTCATCCAAATCAACATCAGTATCCGTCCCAGTCAGTCAGGCAACTACTCGGGCCTCACCAATTGTTGGTCGATGGCTCTTGGGTC ] [+] EMBL CD140066 [ cAT GACTATACTTTGTAAACGACTCGGGGGATGGTTATTCCGGTTCGTTGCTTATGATCTGCATGCATTGAAAACTATTCGACCTGTTGGATTTCATGTACATTTCCCGAGGTACCTACTTACCTCATCCAAATCAACATCAGTATCCGTCCCAGTCAGTCAGGCAACAACTCGGGCCTCACCAATTGTTGGTCGATGGCTCTTGGGTCTTTCTGGCATGACTTTTGGTGCTATTTTGC ] [+] EMBL CD094968 [ ACTATTCGACCTGTTGGATTTCATGTACATTTTCCGAGGTACCTACTT CCTCATCCAAATCAACATCAGTATCCGTCCCAGTCAGTCAGGCAACAACCCGGGCCTCACCAATTGTTGGCCGATGGCTCTTGGGTCTTTCTGGCATGACTTTTGGTGCTATTTTGCTTGGTGGAGTTACAAGATTGACCGAGTCTGGTCTCTCAATGGTTGACTGGCATCCGTTTAAGGAGGTACCTCCTTTCAGTGAAGAACATTGGCGACTAGAATTCGAAAAATACAAGAAGTTCCCAGAACATGAACACTATGTAAAGGAGCGTGGAGAAATGTCAATCACTCAATTCAAGTTTATATGGTATATGGAATTTATTCACCGAATGTGGGGTCGGACGATCGGTGCTGCTTTTGTTTTCCCAGCAATCTATTTTTTTTACAGAGGTTATTTCTCTCCAGTCATGAAATCTCGCGTTTTTATTTATGCAGGACTAATTGGATTTCAGGGTGTTTTGGGCTG ] [+] EMBL CD094794 [ ACTATTCGACCTGTTGGATTTCATGTACATTTTCCGAGGTACCTACTTACCTCATCCAAATCAACATCAGTATCCGTCCCAGTCAGTCAGGCAACAACTCGGGCCTCACCAATTGTTGGCCGATGGCTCTTGGGTCTTTCTGGCATGACTTTTGGTGCTATTTTGCTTGGTGGAGTTACAAGATTGACCGAGTCTGGTCTCTCAATGGTTGACTGGCATCCGTTTAAGGAGGTACCTCCTTTCAGTGAAGAACATTGGCGACTAGAATTCGAAAAATACAAGAAGTTCCCAGAACATGAACACTATGTAAAGGAGCGTGGAGAAATGTCAATCACTCAATTCAAGTTTATATGGTATATGGAATTTATTCACCGAATGTGGGGTCGGACGATCGGTGCTGCTTTTGTTTTCCCAGCAATCTATTTTTTTTACAGAGGTTATTTCTCTCCAGTCATGAAATCTCGCGTTTTTATTTATGCAGGACTAATTGGATTTCAGGGTGTTTTGGGCTG ] [+] EMBL CD122109 [ TCATCCAAATCAACATCAGTATCCGTCCCAGTCAGTCAGGCAACAACTCGGGCCTCACCAATTGTTGGTCGATGGCTCTTGGGTCTTTCTGGCATGACTTTTGGTGCTATTTTGCTTGGTGGAGTTACAAGATTGACCGAGTCTGGTCTCTCAATGGTTGACTGGCATCCGTTTAAGGAGGTACCTCCTTTCGGTGAAGAACATTGGCGACTAGAATTCGAAAAATACAAGAAGTTCCCAGAACATGAACACTATGTAAAGGAGCGTGGAGAAATGTCAATCACTCAATTCAAGTTTATATGGTATATGGAATTTATTCGCCGAATGTGGGGTCGGACGATCGGTGCTGCTTTTGTTTTCCCAGCAATCTATTTTTTTTACAGAGGTTATTTCTCTCCAGTCATGAAATCTCGCGTTTTTATTTATGCAGGACTAATTGGATTTCAGGGTGTTTTGGGCTGGCTTATGGTACGCAGTGGTCTCAAAGAACCTAGACGACCGGCAGGTCTTCCACCAAATGAGAATTATANTTGGTGTTCCACGTGTGGATCATTATTGGCTNTGTGCTCATTTGGTTTCAGCGATTATTCTATATTCATTACTTCTGTGGGGTAGCCTTAACCATCTGGCTTCTCATTCTTTAGT ] [+] EMBL CD140216 [ atGATTGACCGAGTCTGGTCTCTCAATGGTTGACTGGCATCCGTTTAAGGAGGTACCTCCTTTCAGTGAAGAACATTGGCGACTAGAATTCGAAAAATACAAGAAGTTCCCAGAACATGAACACTATGTAAAGGAGCGTGGAGAAATGTCAATCACTCAATTCAAGTTTATATGGTATATGGAATTTATTCACCGAATGTGGGGTCGGACGATCGGTGCTGCTTTTGTTTTCCCAGCAATCTATTTTTTTTACAGAGGTTATTTCTCTCCAGTCATGAAATCTCGCGTTTTTATTTATGCAGGACTAATTGGATTTCAGGGTGTTTTGGGCTGGCTTATGGTACGCAGTGGTCTCAAAGAACCTAGACGACCGGCAGGTCTTCCACCAAATGAGAATTATA TTGGTGCTCCACGTGTGGATCATTA ] [+] EMBL CD079190 [ CCAGTCATGAAATCTCGCGTTTTTATTTATGCAGGACTAATTGGATTTCAGGGTGTTTTGGGCTGGCTTATGGTACGCAGTGGTCTCAAAGAACCTAGACGACCGGCAGGTCTTCCACCAAATGAGAATTATA TTGGTGTTCCACGTGTGGATCATTATTGGCTTTGTGCTCATTTGGTTTCAGCGATTATTCTATATTCATTACTTCTGTGGGGTAGCTTTAACCATCTGGCTTCTCATTCTTTAGTTAAACCATTCAGCAGCGTCAAACGACTTAAGGCATATGGTCATATGGGTAAAGCTCTAACGTTCGCAACCATAATTTATGGTGCTTTTGTTGCCGGTCTTGATGCAGGATTAATCTATAATTCATGGCCAAAAATGGCTGATAAGTGGATTCCTGATGATTTAATTGTATCTCGTTATGGTTCTACTGTGAGAAACTTTTTGGACAATCCAACTACAGTTCAATTTATTCATCGGATGCTAGCTTATACAACAGTTNTAACCACAGGATTATTGTGGGTAAATGTCATGCGTTTAGGTGTAGCATGTACAGGACCACGTATTANGAATGCTGCACA ] [-] EMBL CD136523 [ ATATGGTCATATGGGTAAAGCTCTAACGTTCGCAACCATAATTTATGGTGCTTTTGTTGCCGGTCTTGATGCAGGATTAATCTATAATTCATGGCCAAAAATGGCTGATAAGTGGATTCCTGATGATTTAATTGTATCTCGTTATGGTTCTACTGTGAGAAACTTTTTGGACAATCCAACTACAGTTCAATTTATTCATCGGATGCTAGCTTATACAACAGTTTTAACCACAGGATTATTGTGGGTAAATGTCATGCGTTTAGGTGTAGCATGTACAGGACCACGTATa ] [+] EMBL SM7421 [ AGGTGTAGNATGTACAGGACCACGTATTAGGAATGCTGCACACTTGGTTTGGGGTGCTGTATTAGGACAGTCATTACTTGGCATAACAACTTTATTATGTTATGTACCAGTTTCATTGGGATCATTGCATCAATGCGGTGGTGTTGTTTTGCTTTCATCCTTACTCTGGTTTACTCATTGTTTACGTGCTGTTCCAAAATAAAAACTTGCTAACACTTTTTTTGTGGGAAGCAATTGCAACTTTTTTTCATCATCTCATTCATTTTCTAGATGTTCCATTATAATCATTGTCAATATAATCTTTATAAATATAATGCACAAAG] consensusID : consensus_9737#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence [CGAGGTACCTACTTACCTCATCCAAATCAACATCAGTATCCGTCCCAGTCAGTCAGGCAACAACTCGGGCCTCACCAATTGTTGGTCGATGGCTCTTGGGTCTTTCTGGCATGACTTTTGGTGCTATTCTGCTTGGTGGAGTTACAAGGTTCTCACTATTTCTATTTGTAAACTATTTACTTAAGATTGACCGAGTCTGGTCTCTCAATGGTTGACTGGCATCCGTTCAAGGAGGTACCTCCTTTCAGTGAAGAACATTGGCGACTAGAATTCGAAAAATACAAGAAGT] [-] EMBL CD120782 [CGAGGTACCTACTTACCTCATCCAAATCAACATCAGTATCCGTCCCAGTCAGTCAGGCAACAACTCGGGCCTCACCAATTGTTGGTCGATGGCTCTTGGGTCTTTCTGGCATGACTTTTGGTGCTATTCTGCTTGGTGGAGTTACAAGGTTCTCACTATTTCTATTTGTAAACTATTTACTTAAGATTGACCGAGTCTGGTCTCTCAATGGTTGACTGGCATCCGTTCAAGGAGGTACCTCCTTTCAGTGAAGAACATTGGCGACTAGAATTCGAAAAATACAAGAAGT] consensusID : consensus_9737#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [TCCGTCTCTTCATGATGCACATTTGCAACCATTGTTTATATTGTTGAGCTTAGACATTTATACCCAGGATTATTTTCTTAAGCAAAAGCTCGAGATGACTGAGTTGAACAGACTCTGTGTATACTTAACTTTTCGAATTACATTGTAAAGACTGGGGGATGGTTTTCGGCTCGTGCTTAGGATCTGCGGCTTTGAAAACTATTCGACCTGTTGGATTTCATGTTCATTTTCCGAGGTACCTACTTACCTCATCCA] [+] EMBL CD091757 [TCCGTCTCTTCATGATGCACATTTGCAACCATTGTTTATATTGTTGAGCTTAGACATTTATACCCAGGATTATTTTCTTAAGCAAAAGCTCGAGATGACTGAGTTGAACAGACTCTGTGTATACTTAACTTTTCGAATTACATTGTAAAGACTGGGGGATGGTTTTCGGCTCGTGCTTAGGATCTGCGGCTTTGAAAACTATTCGACCTGTTGGATTTCATGTTCATTTTCCGAGGTACCTACTTACCTCATCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9737#0 GATTCACTAGAGAACAATTCCACTTCTATTATGTACCTAGTATTATGTAGTCGTGTTTCA 60 consensus_9737#1 ------------------------------------------------------------ consensus_9737#2 ------------------------------------------------------------ consensus_9737#0 TTATTAATAACTAAATATTCCACACTTAGGTTCACGCAATTCATGTCGCTATTTAAATTC 120 consensus_9737#1 ------------------------------------------------------------ consensus_9737#2 ------------------------------------------------------------ consensus_9737#0 TAGCAGAATCGGACTTCGATAACTTCCAATCATATTTCATTTTGGGAAATATGATTACAT 180 consensus_9737#1 ------------------------------------------------------------ consensus_9737#2 ------------------------------------------------------------ consensus_9737#0 TGTAAAGACTGGGGGATGGTTTTCGGCTCGTGCTTAGGATCTGCAGCATTGAAAACTATT 240 consensus_9737#1 ------------------------------------------------------------ consensus_9737#2 ------------------------------------------------------------ consensus_9737#0 CGACCTGTTGGATTTCATGTACATTTTCCGAGGTACCTACTTACCTCATCCAAATCAACA 300 consensus_9737#1 ----------------------------CGAGGTACCTACTTACCTCATCCAAATCAACA 32 consensus_9737#2 ---------------------------------TCCGTCTCTTCATGATGCACATTTGCA 27 * * * * * * ** ** ** ** consensus_9737#0 -TCAGTATCCGTCCCAGTCAG-TCAGGCAACAAC-TCGGGCCTCACCAATTGTTGGTCGA 357 consensus_9737#1 -TCAGTATCCGTCCCAGTCAG-TCAGGCAACAAC-TCGGGCCTCACCAATTGTTGGTCGA 89 consensus_9737#2 ACCATTGTTTATATTGTTGAGCTTAGACATTTATACCCAGGATTATT--TTCTTAAGCAA 85 ** * * * * ** * ** ** * * * * * ** ** * * consensus_9737#0 TGGCTCTTGG-GTCTTTCTGGCATGACTTTTGGTGCTATTTTGCTTGGTGGAGTTACAAG 416 consensus_9737#1 TGGCTCTTGG-GTCTTTCTGGCATGACTTTTGGTGCTATTCTGCTTGGTGGAGTTACAAG 148 consensus_9737#2 AAGCTCGAGATGACTGAGTTGAACAGACTCTGTGTATACTTAACTTT-TCGAATTACATT 144 **** * * ** * * * * ** ** * *** * ** ***** consensus_9737#0 -------------------------------------ATTGACCGAGTCTGGTCTCTCAA 439 consensus_9737#1 GTTCTCACTATTTCTATTTGTAAACTATTTACTTAAGATTGACCGAGTCTGGTCTCTCAA 208 consensus_9737#2 GTAAAGACTG---------GGGGATGGTTTTCGGCTCGTGCTTAGGATCTGCGGCTTTGA 195 * * **** * * consensus_9737#0 TGGTTGACTGGCATCCGTTTAAGGAGGTACCTCCTTTCAGTGAAGAACATTGGCGACTAG 499 consensus_9737#1 TGGTTGACTGGCATCCGTTCAAGGAGGTACCTCCTTTCAGTGAAGAACATTGGCGACTAG 268 consensus_9737#2 AAACTATTCGAC--CTGTTGGATTTCATGTTCATTTTCCGAGGTACCTACTTACCTC--- 250 * * * * *** * * **** * * * * * * consensus_9737#0 AATTCGAAAAATACAAGAAGTTCCCAGAACATGAACACTATGTAAAGGAGCGTGGAGAAA 559 consensus_9737#1 AATTCGAAAAATACAAGAAGT--------------------------------------- 289 consensus_9737#2 -ATCCA------------------------------------------------------ 255 ** * consensus_9737#0 TGTCAATCACTCAATTCAAGTTTATATGGTATATGGAATTTATTCACCGAATGTGGGGTC 619 consensus_9737#1 ------------------------------------------------------------ consensus_9737#2 ------------------------------------------------------------ consensus_9737#0 GGACGATCGGTGCTGCTTTTGTTTTCCCAGCAATCTATTTTTTTTACAGAGGTTATTTCT 679 consensus_9737#1 ------------------------------------------------------------ consensus_9737#2 ------------------------------------------------------------ consensus_9737#0 CTCCAGTCATGAAATCTCGCGTTTTTATTTATGCAGGACTAATTGGATTTCAGGGTGTTT 739 consensus_9737#1 ------------------------------------------------------------ consensus_9737#2 ------------------------------------------------------------ consensus_9737#0 TGGGCTGGCTTATGGTACGCAGTGGTCTCAAAGAACCTAGACGACCGGCAGGTCTTCCAC 799 consensus_9737#1 ------------------------------------------------------------ consensus_9737#2 ------------------------------------------------------------ consensus_9737#0 CAAATGAGAATTATATTGGTGTTCCACGTGTGGATCATTATTGGCTNTGTGCTCATTTGG 859 consensus_9737#1 ------------------------------------------------------------ consensus_9737#2 ------------------------------------------------------------ consensus_9737#0 TTTCAGCGATTATTCTATATTCATTACTTCTGTGGGGTAGCCTTAACCATCTGGCTTCTC 919 consensus_9737#1 ------------------------------------------------------------ consensus_9737#2 ------------------------------------------------------------ consensus_9737#0 ATTCTTTAGTTAAACCATTCAGCAGCGTCAAACGACTTAAGGCATATGGTCATATGGGTA 979 consensus_9737#1 ------------------------------------------------------------ consensus_9737#2 ------------------------------------------------------------ consensus_9737#0 AAGCTCTAACGTTCGCAACCATAATTTATGGTGCTTTTGTTGCCGGTCTTGATGCAGGAT 1039 consensus_9737#1 ------------------------------------------------------------ consensus_9737#2 ------------------------------------------------------------ consensus_9737#0 TAATCTATAATTCATGGCCAAAAATGGCTGATAAGTGGATTCCTGATGATTTAATTGTAT 1099 consensus_9737#1 ------------------------------------------------------------ consensus_9737#2 ------------------------------------------------------------ consensus_9737#0 CTCGTTATGGTTCTACTGTGAGAAACTTTTTGGACAATCCAACTACAGTTCAATTTATTC 1159 consensus_9737#1 ------------------------------------------------------------ consensus_9737#2 ------------------------------------------------------------ consensus_9737#0 ATCGGATGCTAGCTTATACAACAGTTNTAACCACAGGATTATTGTGGGTAAATGTCATGC 1219 consensus_9737#1 ------------------------------------------------------------ consensus_9737#2 ------------------------------------------------------------ consensus_9737#0 GTTTAGGTGTAGCATGTACAGGACCACGTATTANGAATGCTGCACACTTGGTTTGGGGTG 1279 consensus_9737#1 ------------------------------------------------------------ consensus_9737#2 ------------------------------------------------------------ consensus_9737#0 CTGTATTAGGACAGTCATTACTTGGCATAACAACTTTATTATGTTATGTACCAGTTTCAT 1339 consensus_9737#1 ------------------------------------------------------------ consensus_9737#2 ------------------------------------------------------------ consensus_9737#0 TGGGATCATTGCATCAATGCGGTGGTGTTGTTTTGCTTTCATCCTTACTCTGGTTTACTC 1399 consensus_9737#1 ------------------------------------------------------------ consensus_9737#2 ------------------------------------------------------------ consensus_9737#0 ATTGTTTACGTGCTGTTCCAAAATAAAAACTTGCTAACACTTTTTTTGTGGGAAGCAATT 1459 consensus_9737#1 ------------------------------------------------------------ consensus_9737#2 ------------------------------------------------------------ consensus_9737#0 GCAACTTTTTTTCATCATCTCATTCATTTTCTAGATGTTCCATTATAATCATTGTCAATA 1519 consensus_9737#1 ------------------------------------------------------------ consensus_9737#2 ------------------------------------------------------------ consensus_9737#0 TAATCTTTATAAATATAATGCACAAAG 1546 consensus_9737#1 --------------------------- consensus_9737#2 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||