These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9738#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 712 fasta sequence [GGCCAGAATTTGGCACGAGGTTCATGTATGTTACTGATGGTGATCTAGTTGCTGAACGGCATGAATTAGTTGATTATTGTAAGAAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTTTGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAACAAAGTTAATGCTACTTCAACACCAAAAGTTTCAAAAGATTTTGAAATTATTTTATCTAAAATGTCACCCCAAGCTGAATATGATATTACTGAACATGTTC-GTGAACTGATAGGTGATTTAAAAGAATTTAAACAACCGGAAACTAAAGAAATCTCAAATAAATTAAAACAATATTTAGATGAAACATATGATCGTGTATGGCAAGTAGTTATATTAAATGGATCATATTGTATGAATTTTTCACATGAACCATTTAAAGCACTTCATTTTAAATATGGACCATATATCTTTTTATTATGGCGTACACCAAAAGGTTAAAACAATTTAGCAACGTTATACTACAATCAAACAAAAGAAAACATTAAAACAAAATGGATTGAAACATTAATCTTAGTGTTGAATATCAATTAGTTTATTTATTATGTCCAACTTTGAGTTATTTGATGTTGTATTGCAAAGAAATATACCCAAATACATATACATGT] [+] EMBL CD079525 [GGCCAGAATTTGGCACGAGGTTCATGTATGTTACTGATGGTGATCTAGTTGCTGAACGGCATGAATTAGTTGATTATTGTAAGAAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTTTGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAACAAAGTTAATGCTACTTCAACACCAAAAGTTTCAAAAGATTTTGAAATTATTTTATCTAAAATGTCACCCCAAGCTGAATATGATATTACTGAACATGTTC GTGAACTGATAGGTGATTTAAAAGAATTTAAACAACCGGAAACTAAAGAAATCTCAAATAAATTAAAACAATATTTAGATGAAACATATGATCGTGTATGGCAAGTAGTTATATTAAATGGATCATATTGTATGAATTTTTCACATGAACCATTTAAAGCACTTCATTTTAAATATGGACCATATATCTTTTTATTATGGCGTACACCAAAAGGTTAAAACAATTTAGCAACGTTATACTACAATCAAACAAAAGAAAACATTAAAACAAAATGGATTGAAACATTAATCTTAGTGTTGAATATCAATTAGTTTATTTATTATGTCCAACTNTGAGTTATTTGATGTTGTATTGCANAGAAATATACCCAAATACATATACATG ] [-] EMBL CD073791 [ TGCTGAACGGCATGAATTAGTTGATTATTGTAAGAAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTTTGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAACAAAGTTAATGCTACTTCAACACCAAAAGTTTCAAAAGATTTTGAAATTATTTTATCTAAAATGTCACCCCAAGCTGAATATGATATTACTGAACATGTTC GTGAACTGATAGGTGATTTAAAAGAATTTAAACAACCGGAAACTAAAGAAATCTCAAATAAATTAAAACAATATTTAGATGAAACATATGATCGTGTATGGCAAGTAGTTATATTAAATGGATCATATTGTATGAATTTTTCACATGAACCATTTAAAGCACTTCATTTTAAATATGGACCATATATCTTTTTATTATGGCGTACACCAAAAGGTTAAAACAATTTAGCAACGTTATACTACAATCAAACAAAAGAAAACATTAAAACAAAATGGATTGAAACATTAATCTTAGTGTTGAATATCAATTAGTTTATTTATTATGTCCAACTTTGAGTTATTTGATGTTGTATTGCAAAGGAATATACCCAAATACA AAACATGT] [-] EMBL AI026216 [ CAAAAGATTTGGAAATTATTTTATCTAAAATGTCACCCCAAGCTGAATAGGATATTACTGAACATGTTC GTGAACTGATAGGTGATTTAAAAGAATTTAAACAACCGGAAACTAAAGAAATCTCAAATAAATTAAAACAATATTTAGATGAAACATATGATCGTGTATGGCAAGTAGTTATATTAAATGGATCATATTGTATGAATTTTTCACATGAACCATTTAAAGCACTTCATTTTAAATATGGACCATATATCTTTTTATTATGGCGTACACCAAAAGGTTAAAACAATTTAGCAACGTTATACTACAATCAAACAAAAGAAAACATT AAACAAAATGGATTGAAACATTAATCTTAGTGTTGAATATCAATTAGTTTATTTATTATGTCCAACTTTGAGTTATTTGATGTTGTATTGCAAAGAAATATACCCAAATACATATACATGT] [-] EMBL AI740434 [ nnncaanGTTCTGTGAACNGATTGGGGATTTTTAAGAATTTTTACAACCGGAAACTAAAGAAACCTCAAATAAATTNAAACAATTTTTTGATGAAACATATGATCGTGTTTTGCAAGTAGTTATATTAAATGGATCATATTGTATGAATTTTTCACATGAACCATTTAAAGCACTTCATTTTAAATATGGACCATATATCTTTTTATTATGGCGTACACCAAAAGGTTAAAACAATTTAGCAACGTTATACTACAATCAAACAAAAGAAAACATTAAAACAAAATGGATTGAAACATTAATCTTAGTTTTGAATATCAATTAGTTTATTTATTATGTCCAACTTTGAGTTATTTGATGTTGTATTGCAAAGAAATATACCCAAATACATATACATGT] consensusID : consensus_9738#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 418 fasta sequence [GTATTTTCGAATATAAGAAATCATAAATTTCAGATTCGAAATTTTTTCGAAAATCAATCAGAATGTTGGAAGAATTTATCAAAGCATATCTTGATGTATGTTCTGATGGTGATCTAGTTGCTGAACGGCATGAATTAGTTGATTATTGTAAGAAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTTTGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAACAAAGTTAATGCTACTTCAACACCAAAAGTTTCAAAAGATTTTGAAATTATTTTATCTAAAATGTCACCCCAAGCTGAATATGATATTACTGAACATGTTCGTGAACTGATAGGTGATTTAAA] [+] EMBL CD161034 [GTATTTTCGAATATAAGAAATCATAAATTTCAGATTCGAAATTTTTTCGAAAATCAATCAGAATGTTGGAAGAATTTATCAAAGCATATCTTGATGTATGTTCTGATGGTGATCTAGTTGCTGAACGGCATGAATTAGTTGATTATTGTAAGAAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTTTGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAACAAAGTTAATGCTACTTCAACACCAAAAGTTTCAAAAGATTTTGAAATTATTTTATCTAAAATGTCACCCCAAGCTGAATATGATATTACTGAACATGTTCGTGAACTGATAGGTGATTTAAA] [+] EMBL CD159233 [GTATTTTCGAATATAAGAAATCATAAATTTCAGATTCGAAATTTTTTCGAAAATCAATCAGAATGTTGGAAGAATTTATCAAAGCATATCTTGATGTATGTTCTGATGGTGATCTAGTTGCTGAACGGCATGAATTAGTTGATTATTGTAAGAAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTTTGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAACAAAGTTAATGCTACTTCAACACCAAAAGTTTCAAAAGATTTTGAAATTATTTTATCTAA ] [+] EMBL CD159240 [GTATTTTCGAATATAAGAAATCATAAATTTCAGATTCGAAATTTTTTCGAAAATCAATCAGAATGTTGGAAGAATTTATCAAAGCATATCTTGATGTATGTTCTGATGGTGATCTAGTTGCTGAACGGCATGAATTAGTTGATTATTGTAAGAAGAATAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTTTGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAACAAAGTTAATGCTACTTCAACACCAAAAGTTTCAAAAGATTTTGAAATTATTTTATCTAA ] [+] EMBL CD159329 [GTATTTTCGAATATAAGAAATCATAAATTTCAGATTCGAAATTTTTTCGAAAATCAATCAGAATGTTGGAAGAATTTATCAAAGCATATCTTGATGTATGTTCTGATGGTGATCTAGTTGCTGAACGGCATGAATTAGTTGATTATTGTAAGAAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTATGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAACAGAGTTAATGCTACTTCAACACCAAAAGTTTCAAAAGATTTTGAAATTATTTTATCTAA ] [+] EMBL AW061381 [ AATTTCAGATTCGAAATTTTTTCGAAAATCAATCAGAATGTTGGAAGAATTTATCAAAGCATATCTTGATGTATGTTCTGATGGTGATCTAGTTGCTGAACGGCATGAATTAGTTGATTATTGTAAGAAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTTTGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAAC AAGTTAATGCTACTTCAACACC AAAGTTTC AAAGA TTTGAAATTTTTTTA CTAAATTG C CCCCACG TGAATA GATA CACTG CATATGC TGAACAGCTAGa ] [+] EMBL CD161099 [ TCAGATTCGAAATTTTTTCGAAAATCAATCAGAATGTTGGAAGAATTTATCAAAGCATATCTTGATGTATGTTCTGATGGTGATCTAGTTGCTGAACGGCATGAATTAGTTGATTATTGTAAGAAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTTTGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAACAAAGTTAATGCTACTTCAACACCAAAAGTTTCAAAAGATTTTGGAATTATTTTATCTAAAATGTCACCCCAAGCTGAATATGATATTACTGAACATGTTCGTGAACTGATAGGTGATTTAAA] consensusID : consensus_9738#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [AGTTTTAAACAGCGACACTAAGAATCTCAAAAAATAAACATTTGAGAGAAACATATCTCGTGTGCGCAGTTATTATGTGAGGGCTCATATGTAGAATTTTCACATGAACCATTAAAGCACTTCATTTAAATATGGCCCATATATCTTTTATTGTGGCGCACCCCAAAAGGTTAAACCAATTCAGCACCGTTATACTGCATTCAAACAAAGGAAACCATTAAACCAAATTGGATTGAAACATTAATCTTAGTGTTGAATATCAATTAGTTTATTTATTATGTCCAACTTTGAGTAATTTGATGTTGTATTGCAAAGAAATATACCCAAATACATATACATGT] [-] EMBL AW330554 [AGTTTTAAACAGCGACACTAAGAATCTCAAAAAATAAACATTTGAGAGAAACATATCTCGTGTGCGCAGTTATTATGTGAGGGCTCATATGTAGAATTTTCACATGAACCATTAAAGCACTTCATTTAAATATGGCCCATATATCTTTTATTGTGGCGCACCCCAAAAGGTTAAACCAATTCAGCACCGTTATACTGCATTCAAACAAAGGAAACCATTAAACCAAATTGGATTGAAACATTAATCTTAGTGTTGAATATCAATTAGTTTATTTATTATGTCCAACTTTGAGTAATTTGATGTTGTATTGCAAAGAAATATACCCAAATACATATACATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9738#0 GGCCAGAATTTGGCACGAGGTTCATGTATGTTACTGATGGTGATCTAGTTGCTGAACGGC 60 consensus_9738#2 ------------------------------------------------------------ consensus_9738#1 ------------------------------------------------------------ consensus_9738#0 ATGAATTAGTTGATTATTGTAAGAAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGA 120 consensus_9738#2 ------------------------------------------------------------ consensus_9738#1 ------------------------------------------------------------ consensus_9738#0 TCGATCATTTTGACGTTGATAAAGATGATCAAATATCAATGGAAGAATTTTGCAGGGCAT 180 consensus_9738#2 ------------------------------------------------------------ consensus_9738#1 ------------------------------------------------------------ consensus_9738#0 TAGGCCTAAATCAATCAGAAATGTGTATAGAAAAAGTTCAACGTAACAAAGTTAATGCTA 240 consensus_9738#2 ------------------------------------------------------------ consensus_9738#1 ------------------------------------------------------------ consensus_9738#0 CTTCAACACCAAAAGTTTCAAAAGATTTTGAAATTATTTTATCTAAAATGTCACCCCAAG 300 consensus_9738#2 ------------------------------------------------------------ consensus_9738#1 ------------------------------------------------------------ consensus_9738#0 CTGAATATGATATTACTGAACATGTTCGTGAACTGATAGGTGATTTAAAAGAATTTAAAC 360 consensus_9738#2 --------------------------------------------------AGTTTTAAAC 10 consensus_9738#1 -------------------------GTATTTTCGAATATAAGAAATCATAAATTTCAGAT 35 ** * * consensus_9738#0 AACCGGAAACTAAAGAAATCTCAAATAAATTAAAACAATATTTAGATGAAACATATGATC 420 consensus_9738#2 AGC--GACACTAA--GAATCTCAAA------AAATAAACATTTGAGAGAAACATATC-TC 59 consensus_9738#1 TCG--AAATTTTTTCGAAAATCAATCAGAATGTTGGAAGAATTTATCAAAGCATATCTTG 93 * * ** **** ** * ** ** ***** * consensus_9738#0 GTGTATGGCAAGTAGTTA-------TATTAAATGGATCATATTGTATGAA--TTTTTCAC 471 consensus_9738#2 GTGTGCGC--AGTTATTA-------TGT--GAGGGCTCATAT---GTAGA--ATTTTCAC 103 consensus_9738#1 ATGTATGTTCTGATGGTGATCTAGTTGCTGAACGGCATGAATTA-GTTGATTATTGTAAG 152 *** * * * * * ** ** * * ** * * consensus_9738#0 ATGAACCATTTAAAGCAC--TTCATTTTAAATATGGACCATATATCTTTTTATTATGGCG 529 consensus_9738#2 ATGAACCATT-AAAGCAC--TTCATTT-AAATATGGCCCATATATCTTTT-ATTGTGGCG 158 consensus_9738#1 AAGAAAAATCTCGATCAAAACTTGGTCCAGCAATGGATCGATCATTTTGACGTTGATAAA 212 * *** ** * ** * * * **** * ** ** ** consensus_9738#0 TACACCAAAAGGTTAA---AACAATTTAGCAA--CGTTATACTACAATCAAACAAAAGAA 584 consensus_9738#2 CACCCCAAAAGGTTAA---ACCAATTCAGCAC--CGTTATACTGCATTCAAACAAAGGAA 213 consensus_9738#1 GATGATCAAATATCAATGGAAGAATTTTGCAGGGCATTAGGCCTAAATCAATCAGAAATG 272 * *** * ** * **** *** * *** * * **** ** * consensus_9738#0 AACATTAAAACAAAATGGATTGA-AACATTAAT-----CTTAGTGTTGAA--TATCAATT 636 consensus_9738#2 ACCATTAAACCAAATTGGATTGA-AACATTAAT-----CTTAGTGTTGAA--TATCAATT 265 consensus_9738#1 TGTATAGAAAAAGTTCAACGTAACAAAGTTAATGCTACTTCAACACCAAAAGTTTCAAAA 332 ** ** * * * ** ***** * * ** * **** consensus_9738#0 AGTTT---ATTTATTATGTCCAACTTTGAGT----TATTTGATGTTGTATTGCAAAGAAA 689 consensus_9738#2 AGTTT---ATTTATTATGTCCAACTTTGAGT----AATTTGATGTTGTATTGCAAAGAAA 318 consensus_9738#1 GATTTTGAAATTATTTTATCTAAAATGTCACCCCAAGCTGAATATGATATTACTGA-ACA 391 *** * ***** * ** ** * * ** * **** * * * * consensus_9738#0 TATACCCAAATACATATACATGT---- 712 consensus_9738#2 TATACCCAAATACATATACATGT---- 341 consensus_9738#1 TGTTCGTGAACTGATAGGTGATTTAAA 418 * * * ** *** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||