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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9741#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1225 fasta sequence
[AGAAAGAAGACATATGCCATCATTCGTGCAGTATACAATCATAGCCACTCTCCTGAAGACTTTGAACGTGAATTGGATTTTGTACTAAGTCGTAAAGTATGTATGGTCATTATTGAACCAGAATCTCTCGGTGATGTAACGTGGCGATGGATTCGTACGGGTAACTGGTTACATAAAACAGCTGTTATATCAGGAATAGCTGCTGTGACTACAGCTGGTGTTGGCTTGATGTGGAACTCCACATTTTCTAAAATATACTTACCGTTAGACCTCGGTACTGGTTGGGTTCCCACTGTTCGAACAATCACACCCAGTGTTATTCGGTTTATTACAACTACATTGAGTGCGATTAGTGCCTCTGCTGCAGGGTTGTATGCATTGTTTTGGCAATGGGATCCATGCTGTAAGTATCAAGCGGCACAATCTCTAGCATCTCTGCCCGTTGGAACAGCTTCCTTTGTAACAAGTAGTAATCATGCCTTGACGAATTCACATCCAGGGGATAATTCCTCAGGCAGTGGAATGAGCAACGGTGAAAGCCCCAATGGTTCTTTGGAAATAAGTCGGGCAAGCAATGGAAAGCGTGCTCGAGCTATCATTGCAGAGAATCATTCCAATTCAAACAGTCCTCCATTACGTCCAGTGGTTTTAGTTCATCGAGATGATGGAAGACGAAAAGTACTGCATAATACCGTCTCTCTAACTTCTACTCTAGTCGCTTGTTATATTCTTTTTAGATGGTCTAGACATTGAAATAT--GATTGTTAGTAATCCTTAATTTTGTTATATCCTTGTCTGCCGTAGTCTGTCTGTTTTCTTAACCTCCTTCACCCGACATATGTGAAGAACAATCTCTTCCTTTTAGATTTATTTTTTTCCTAAAACCTGCGTTACAGTATCCCATGGTTTCATAATATGTTTAACTATGGGGTACTATAAATATCTTAGCGAGCATTTTTACAGTCCTTATATTTATTTTCTACACTTAGATATACATGTTAGTATGTATTTAAGTAGATAACTTTTCCGTTGCTATCAAAAATTACTTTTAGTACCGGTCTCTTATTATTTATGTGTTAAGAATCACATATTGCGTTTCATTTTGTTAGTAAGATGCTCACATACCAATTAAATTGTAAATATATTATCTTTATAACAACTCTTCACATAATGAAACTGAATCTTTCTTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CD078365 [AGAAAGAAGACATATGCCATCATTCGTGCAGTATACAATCATAGCCACTCTCCTGAAGACTTTGAACGTGAATTGGATTTTGTACTAAGTCGTAAAGTATGTATGGTCATTATTGAACCAGAATCTCTCGGTGATGTAACGTGGCGATGGATTCGTACGGGTAACTGGTTACATAAAACAGCTGTTATATCAGGAATAGCTGCTGTGACTACAGCTGGTGTTGGCTTGATGTGGAACTCCACATTTTCTAAAATATACTTACCGTTAGACCTCGGTACTGGTTGGGTTCCCACTGTTCGAACAATCACACCCAGTGTTATTCGGTTTATTACAACTACATTGAGTGCGATTAGTGCCTCTGCTGCAGGGTTGTATGCATTGTTTTGGCAATGGGATCCATGCTGTAAGTATCAAGCGGCACAATCTCTAGCATCTCTGCCCGTTGGAACAGCTTCCTTTGTAACAAGTAGTAATCATGCCTTGACGAATTCACATCCAGGGGATAATTCCTCAGGCAGTGGAATGAGCAACGGTGAAAGCCCCAATGGTTCTTTGGAAATAAGTCGGGCAAGCAATGGAAAGCGTGCTCGAGCTA ]
[+] EMBL CD078821 [ AGACTTTGAACGTGAATTGGATTTTGTACTAAGTCGTAAAGTATGTATGGTCATTATTGAACCAGAATCTCTCGGTGATGTAACGTGGCGATGGATTCGTACGGGTAACTGGTTACATAAAACAGCTGTTATATCAGGAATAGCTGCTGTGACTACAGCTGGTGTTGGCTTGATGTGGAACTCCACATTTTCTAAAATATACTTACCGTTAGACCTCGGTACTGGTTGGGTTCCCACTGTTCGAACAATCACACCCAGTGTTATTCGGTTTATTACAACTACATTGAGTGCGATTAGTGCCTCTGCTGCAGGGTTGTATGCATTGTTTTGGCAATGGGATCCATGCTGTAAGTATCAAGCGGCACAATCTCTAGCATCTCTGCCCGTTGGAACAGCTTCCTTTGTAACAAGTAGTAATCATGCCTTGACGAATTCACATCCAGGGGATAATTCCTCAGGCAGTGGAATGAGCAACGGTGAAAGCCCCAATGGTTCTTTGGAAATAAGTCGGGCAAGCAATGGAAAGCGTGCTCGAGCTATCATTGCAGAGAATCATTCCAATTCANACAGTCCTCCATTACGTCCAGTGGTTTTAGTTCATCGAGATGATG ]
[+] EMBL CD187106 [ CTCTCGGTGATGTAACGTGGCGATGGATTCGTACGGGTAACTGGTTACATAAAACAGCTGTTATATCAGGAATAGCTGCTGTGACTACAGCTGGTGTTGGCTTGATGTGGAACTCCACATTTTCTAAAATATACTTACCGTTAGACCTCGGTACTGGTTGGGTTCCCACTGTTCGAACAATCACACCCAGTGTTATTCGGTTTATTACAACTACATTGAGTGCGATTAGTGCCTCTGCTGCAGGGTTGTATGCATTGTTTTGGCAATGGGATCCATGCTGTAAGTATCAAGCGGCACAATCTCTAGCATCTCTGCCCGTTGGAACAGCTTCCTTTGTAACAAGTAGTAATCATGCCTTGACGAATTCACATCCAGGGGATAATTCCTCAGGCAGTG ]
[-] EMBL BG932536 [ gtattgtGATGGACGCG GGGAGTAACTGGTTACATAAAACAGCTGTTATATCAGGAATAGCTGCTGTGACTACAGCTGGTGTTGGCTTGATGTGGAACCCCACATTTTCTAAAATATACTTACCGTTAGACCTCGGTACTGGTTGGGTTCCCACTGTTCGAACAATCACACCCAGTGTTATTCGGTTTATTACAACTACATTGAGTGCGATTAGTGCCTCTGCTGCAGGGTTGTATGCATTGTTTTGGCAATGGGATCCATGCTGTAAGTATCAAGCGGCACAATCTCTAGCATCTCTGCCCGTTGGAACAGCTTCCTTTGTAACAAGTAGTAATC ]
[+] EMBL BG932442 [ gAGTGGAATGAGCAACGGTGAAAGCCCCAATGGTTGTTTGGAAATAAGTCGGGCAAGCAATGGAAAGCGTGCTCGAGCTATCATTGCAGAGAATCATTCCAATTCAAACAGTCCTCCATTACGTCCAGTGGTTTTAGTTCATCGAGATGATGGACGACGAAAAGTACTGCATAATACCGTCTCTCTA ]
[+] EMBL CD142630 [ AAAGCCCCAATGGTTCTTTGGAAATAAGTCGGGCAAGCAATGGGAAGCGTGCTCGAGCTATCATTGCAGAGAATCATTCCAATTCAAACAGTCCTCCATTACGTCCAGTGGTTTTAGTTCATCGAGATGATGGAAGACGAAAAGTACTGCATAATACCGTCTCTCTAACTTCTACTCTAGTCGCTTGTTATATTCTTTTTAGATGGTCTAGACATTGAAATATNNGA TG TAGTAATCCTTAATTNTG TATATCNCTGTCTGCCGTAGTCTGTCTGTTTTC TAACCTCC TCACCCGACATATGT ]
[+] EMBL BG932565 [ AGCCCCAATGGTTCTTTGGAAATAAGTCGGGCAAGCAATGGAAAGCGTGCTCGAGCTATCATTGCAGAGAATCATTCCAATTCAAACAGTCCTCCATTACGTCCAGTGGTTTTAGTTCATCGAGACGATGGAAGACGAAAAGTACTGCATAATACCGTCTCTCTAACTTCTACTCTAGTCGCTTGTTATATTCTTTTTAGATGGTCTAGACATTGAAATAT GATTGTTAGTAATCCTTAATTTTGTTATATCCTTGTCCGCCGTAGTCTGTCTGTTTTCTTAACCTCCT ]
[-] EMBL CD072924 [ GTCGGGCAAGCAATGGAAAGCGTGCTCGAGCTATCATTGCAGAGAATCATTNCAATTCAAACAGTCCTCCATTACGTCCAGTGGTTTTAGTTCATCGAGATGATGGAAGACGAAAAGTACTGCATAATACCGTCTCTCTAACTTCTACTCTAGTCGCTTGTTATATTCTTTTTAGATGGTCTAGACATTGAAATAT GATTGTTAGTAATCCTTAATTTTGTTATATCCTTGTCTGCCGTAGTCTGTCTGTTTTCTTAACCTCCTTCACCCGACATATGTGAAGAACAATCTCTTCCTTTTAGATTTATTTTTTTCCTAAAACCTGCGTTACAGTATCCCATGGTTTCATAATATGTTTAACTATGGGGTACTATAAATATCTTAGCGAGCATTTTTACAGTCCTTATATTTATTTTCTACACTTAGATATACATGTTAGTATGTATTTAAGTAGATAACTTTTCCGTTGCTATCAAAAATTACTTTTAGTACCGGTCTCTTATTATTTATGTGTTAAGAATCACATATTGCGTTTCATTTTGTTAGTAAGATGCTCACATACCAATTAAATTGTAAATATATTATCTTTATAA ]
[-] EMBL CD073281 [ ATGGAAAGCGTGCTCGAGCTATCATTGCAGAGAATCATTCCAATTCAAACAGTCCTCCATTACGTCCAGTGGTTTTAGTTCATCGAGATGATGGAAGACGAAAAGTACTGCATAATACCGTCTCTCTAACTTCTACTCTAGTCGCTTGTTATATTCTTTTTAGATGGTCTAGACATTGAAATAT GATTGTTAGTAATCCTTAATTTTGTTATATCCTTGTCTGCCGTAGTCTGTCTGTTTTCTTAACCTCCTTCACCCGACATATGTGAAGAACAATCTCTTCCTTTTAGATTTATTTTTTTCCTAAAACCTGCGTTACAGTATCCCATGGTTTCATAATATGTTTAACTATGGGGTACTATAAATATCTTAGCGAGCATTTTTACAGTCCTTATATTTATTTTCTACACTTAGATATACATGTTAGTATGTATTTAAGTAGATAACTTTTCCGTTGCTATCAAAAATTACTTTTAGTACCGGTCTCTTATTATTTATGTGTTAAGAATCACATATTGCGTTTCATTTTGTTAGTAAGATGCTCACATACCAATTAAATTGTAAATATATTATCTTTATAA ]
[-] EMBL AI395766 [ TGTCTGCCGTAGTCTGCCTGTTTTCTTAACCTCCTTCACCCGACATATGTGAAGAACAATCTCTTCCTTTTAGA TTATTTTTTTCCTAAAACCTGCGTTACAGTATCCCATGGGTTCATAATATGTTTAACTATGGGGTACTATAAATATCTTAGCGAGCATTTTTACAGTCCTTATATTTATTTTCTACACTTAGATATACATGTTAGTATGTATTTAAGTAGATAACTTTTCCGTTGCTATCAAAAATTACTTTTAGTACCGGTCTCTTATTATTTATGTGTTAAGAATCACATATTGCGTTTCATTTTGTTAGTAAGATGCTCACATACCAATTAAATTGTAAATATATTATCTTTATAACAACTCTTCACATAATGAAACTGAATCTTTCTTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_9741#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence
[TATCCCGTGTCTGCCGTAGTCTGTCTGTTTTCTTAACCTCCCTTCACCCGACATATGTGAAGAACAATCTCTTCTATTTAGATCTATTTTTTTCCTAAAACCTGCGTTACAGTATCCCATGGTTTCATAATATGTTTAACTATGGGGTACTATAAATATCTTAGCGAGCATTTTTACAGTCCTTATATTTATTTTCTACACTTAGATATACATGTTAGTATGTATTTAAGTAGATAACTTTTCCGTTGCTATCAAAAATTACTTTTAGTACCGGTCTCTTATTATTTATGTGTTAAGAATCACATATTGCGTTTCATTTTGTTAGTAAGATGCTCACATACCAATTAAATTGTAAATATATTATCTTTATAACAACTCTTCACATAATGAAACTGAATCTTTCTTGTGTTTCTTAGTTTTTATGGACTACCTGAAAAAATCTAATGTTCAATCATCAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AI395259 [TATCCCGTGTCTGCCGTAGTCTGTCTGTTTTCTTAACCTCCCTTCACCCGACATATGTGAAGAACAATCTCTTCTATTTAGATCTATTTTTTTCCTAAAACCTGCGTTACAGTATCCCATGGTTTCATAATATGTTTAACTATGGGGTACTATAAATATCTTAGCGAGCATTTTTACAGTCCTTATATTTATTTTCTACACTTAGATATACATGTTAGTATGTATTTAAGTAGATAACTTTTCCGTTGCTATCAAAAATTACTTTTAGTACCGGTCTCTTATTATTTATGTGTTAAGAATCACATATTGCGTTTCATTTTGTTAGTAAGATGCTCACATACCAATTAAATTGTAAATATATTATCTTTATAACAACTCTTCACATAATGAAACTGAATCTTTCTTGTGTTTCTTAGTTTTTATGGACTACCTGAAAAAATCTAATGTTCAATCATCAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9741#0 AGAAAGAAGACATATGCCATCATTCGTGCAGTATACAATCATAGCCACTCTCCTGAAGAC 60
consensus_9741#1 ------------------------------------------------------------
consensus_9741#0 TTTGAACGTGAATTGGATTTTGTACTAAGTCGTAAAGTATGTATGGTCATTATTGAACCA 120
consensus_9741#1 ------------------------------------------------------------
consensus_9741#0 GAATCTCTCGGTGATGTAACGTGGCGATGGATTCGTACGGGTAACTGGTTACATAAAACA 180
consensus_9741#1 ------------------------------------------------------------
consensus_9741#0 GCTGTTATATCAGGAATAGCTGCTGTGACTACAGCTGGTGTTGGCTTGATGTGGAACTCC 240
consensus_9741#1 ------------------------------------------------------------
consensus_9741#0 ACATTTTCTAAAATATACTTACCGTTAGACCTCGGTACTGGTTGGGTTCCCACTGTTCGA 300
consensus_9741#1 ------------------------------------------------------------
consensus_9741#0 ACAATCACACCCAGTGTTATTCGGTTTATTACAACTACATTGAGTGCGATTAGTGCCTCT 360
consensus_9741#1 ------------------------------------------------------------
consensus_9741#0 GCTGCAGGGTTGTATGCATTGTTTTGGCAATGGGATCCATGCTGTAAGTATCAAGCGGCA 420
consensus_9741#1 ------------------------------------------------------------
consensus_9741#0 CAATCTCTAGCATCTCTGCCCGTTGGAACAGCTTCCTTTGTAACAAGTAGTAATCATGCC 480
consensus_9741#1 ------------------------------------------------------------
consensus_9741#0 TTGACGAATTCACATCCAGGGGATAATTCCTCAGGCAGTGGAATGAGCAACGGTGAAAGC 540
consensus_9741#1 ------------------------------------------------------------
consensus_9741#0 CCCAATGGTTCTTTGGAAATAAGTCGGGCAAGCAATGGAAAGCGTGCTCGAGCTATCATT 600
consensus_9741#1 ------------------------------------------------------------
consensus_9741#0 GCAGAGAATCATTCCAATTCAAACAGTCCTCCATTACGTCCAGTGGTTTTAGTTCATCGA 660
consensus_9741#1 ------------------------------------------------------------
consensus_9741#0 GATGATGGAAGACGAAAAGTACTGCATAATACCGTCTCTCTAACTTCTACTCTAGTCGCT 720
consensus_9741#1 ------------------------------------------------------------
consensus_9741#0 TGTTATATTCTTTTTAGATGGTCTAGACATTGAAATATGATTGTTAGTAATCCTTAATTT 780
consensus_9741#1 ------------------------------------------------------------
consensus_9741#0 TGTTATATCCT-TGTCTGCCGTAGTCTGTCTGTTTTCTTAACCTCC-TTCACCCGACATA 838
consensus_9741#1 -----TATCCCGTGTCTGCCGTAGTCTGTCTGTTTTCTTAACCTCCCTTCACCCGACATA 55
***** ********************************** *************
consensus_9741#0 TGTGAAGAACAATCTCTTCCTTTTAGATTTATTTTTTTCCTAAAACCTGCGTTACAGTAT 898
consensus_9741#1 TGTGAAGAACAATCTCTTCTATTTAGATCTATTTTTTTCCTAAAACCTGCGTTACAGTAT 115
******************* ******* *******************************
consensus_9741#0 CCCATGGTTTCATAATATGTTTAACTATGGGGTACTATAAATATCTTAGCGAGCATTTTT 958
consensus_9741#1 CCCATGGTTTCATAATATGTTTAACTATGGGGTACTATAAATATCTTAGCGAGCATTTTT 175
************************************************************
consensus_9741#0 ACAGTCCTTATATTTATTTTCTACACTTAGATATACATGTTAGTATGTATTTAAGTAGAT 1018
consensus_9741#1 ACAGTCCTTATATTTATTTTCTACACTTAGATATACATGTTAGTATGTATTTAAGTAGAT 235
************************************************************
consensus_9741#0 AACTTTTCCGTTGCTATCAAAAATTACTTTTAGTACCGGTCTCTTATTATTTATGTGTTA 1078
consensus_9741#1 AACTTTTCCGTTGCTATCAAAAATTACTTTTAGTACCGGTCTCTTATTATTTATGTGTTA 295
************************************************************
consensus_9741#0 AGAATCACATATTGCGTTTCATTTTGTTAGTAAGATGCTCACATACCAATTAAATTGTAA 1138
consensus_9741#1 AGAATCACATATTGCGTTTCATTTTGTTAGTAAGATGCTCACATACCAATTAAATTGTAA 355
************************************************************
consensus_9741#0 ATATATTATCTTTATAACAACTCTTCACATAATGAAACTGAATCTTTCTTGTG------- 1191
consensus_9741#1 ATATATTATCTTTATAACAACTCTTCACATAATGAAACTGAATCTTTCTTGTGTTTCTTA 415
*****************************************************
consensus_9741#0 -----------------AAAAAAAAAAAA------------AAAAAAAAAAAAAAAAAAA 1222
consensus_9741#1 GTTTTTATGGACTACCTGAAAAAATCTAATGTTCAATCATCAAAAAAAAAAAAAAAAAAA 475
****** ** *******************
consensus_9741#0 AAA 1225
consensus_9741#1 AAA 478
***
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||