These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9749#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 883 fasta sequence [CGGCTCGAGGACGATCCTTGAGTATGCCAATTGTCATTCATTATAAACGTTTTGTATGACTTCCCTGGAGTTCATTATAACCTGGTCAATACTTTGAATTGGATATTGCAAATCAGTCGCGCTTCAGACTATTTACATCATTCATGTTCCCCCCCGGTTATACATGCAGATATAAAACCGTCCAATATTTTAGGTTTTGATAGATTGCGTTTAGTTAAATTAGGTGATTTTGGATCATCTAGAACTAATTTATCTGACGAACCTTCCGTATTTGGAACTCTGTGTTATATGGCCCCAGAACTATGGACAGTTCGAAGTGGTGAAAAATTACCGTACTCAGAAAAATCTGATGTCTACAGTTTAACAGTTACATTTTGGGAATTTCTAGCTCGTGAACCTCCAAATAAAATCCTGAAAAGACGTGATGTAGCAGACAAGTTTTGGTCTTCTATTACTCAGCGACCACCTACATTAGCTGGGTGTCCTGAACTACTAAGCATCATTATTGAGAGTGGTTGGGCTGTAAATCCCATGGTGCGACCTACAATGTTCCAACTGAGCAAATGTTTGACTCCTATAATCGAACAAATATTTCCAATAGATAGCATTATCCAGGGTATTGATATCCCTGATGACTGTTTAAACTTTTTAAAGAAATTGTAGCATATTGCACTTTAAGAGTGTATATAGTTCGAGACAGTGTTCCCTGTTTCCTTAAACTTCTGAGTACATGTGAAGTAATCTTACAGTATCCATTTGGTTAGCCGTGCCTAATAGTAGTTCACACTACAAATGTTTGTCATTCGAAGACTTCACTAACTTTGTAGTTCCATTCCAATATTTGTACTTTTAATATTCTGTGTTGTGCAAATTATTTTTTTAT] [+] EMBL CD082398 [CGGCTCGAGGACGATCCTTGAGTATGCCAATTGTCATTCATTATAAACGTTTTGTATGACTTCCCTGGAGTTCATTATAACCTGGTCAATACTTTGAATTGGATATTGCAAATCAGTCGCGCTTCAGACTATTTACATCATTCATGTTCCCCCCCGGTTATACATGCAGATATAAAACCGTCCAATATTTTAGGTTTTGATAGATTGCGTTTAGTTAAATTAGGTGATTTTGGATCATCTAGAACTAATTTATCTGACGAACCTTCCGTATTTGGAACTCTGTGTTATATGGCCCCAGAACTATGGACAGTTCGAAGTGGTGAAAAATTACCGTACTCAGAAAAATCTGATGTCTACAGTTTAACAGTTACATTTTGGGAATTTCTAGCTCGTGAACCTCCAAATAAAATCCTGAAAAGACGTGATGTAGCAGACAAGTTTTGGTCTTCTATTACTCAGCGACCACCTACATTAGCTGGGTGTCCTGAACTACTAAGCATCATTATTGAGAGTGGTTGGGCTGTAAATCCCATGGTGCGACCTACAATGTTCCAACTGAGCAAATGTTTGACTCCTATAATCGAAACAATATTTCCAATAGATAGCATTATCCAGGGTATTGATATCCCTGA ] [+] EMBL CD084089 [ cgaggCGAACCTTCCGTATTTGGAACTCTGTGTTATATGGCCCCAGAACTATGGACAGTTCGAAGTGGTGAAAAATTACCGTACTCAGAAAAATCTGATGTCTACAGTTTAACAGTTACATTTTGGGAATTTCTAGCTCGTGAACCTCCAAATAAAATCCTGAAAAGACGTGATGTAGCAGACAAGTTTTGGTCTTCTATTACTCAGCGACCACCTACATTAGCTGGGTGTCCTGAACTACTAAGCATCATTATTGAGAGTGGTTGGGCTGTAAATCCCATGGTGCGACCTACAATGTTCCAACTGAGCAAATGTTTGACTCCTATAATCGAACAAATATTTCCAATAGATAGCATTATCCAGGGTATTGATATCCCTGATGACTGTTTAAACTTTTTAAAGAAATTGTAGCATATTGCACTTTAAGAGTGTATATAGTTC ] [-] EMBL CD075999 [ TTTTGGGAATTTCTAGCTCGTGAACCTCCAAATAAAATCCTGAAAAGACGTGATGTAGCAGACAAGTTTTGGTCTTCTATTACTCAGCGACCACCTACATTAGCTGGGTGTCCTGAACTACTAAGCATCATTATTGAGAGTGGTTGGGCTGTAAATCCCATGGTGCGACCTACAATGTTCCAACTGAGCAAATGTTTGACTCCTATAATCGAACAAATATTTCCAATAGATAGCATTATCCAGGGTATTGATATCCCTGATGACTGTTTAAACTTTTTAAAGAAATTGTAGCATATTGCACTTTAAGAGTGTATATAGTTCGAGACAGTGTTCCCTGTTTCCTTAAACTTCTGAGTACATGTGAAGTAATCTTACAGTATCCATTTGGTTAGCCGTGCCTAATAGTAGTTCACACTACAAATGTTTGTCATTCGAAGACTTCACTAACTTTGTAGTTCCATTCCAATATTTGTACTTTTAATATTCTGTGTTGTGCAAATTATTTTTTTAT] [-] EMBL CD077116 [ ATCCCATGGTGCGACCTACAATGTTCCAACTGAGCAAATGTTTGACTCCTATAATCGAACAAATATTTCCAATAGATAGCATTATCCAGGGTATTGATATCCCTGATGACTGTTTAAACTTTTTAAAGAAATTGTAGCATATTGCACTTTAAGAGTGTATATAGTTCGAGACAGTGTTCCCTGTTTCCTTAAACTTCTGAGTACATGTGAAGTAATCTTACAGTATCCATTTGGTTAGCCGTGCCTAATAGTAGTTCACCCTACAAATGTTTGTCATTCGAAGACTTCACTAACTTTGTAGTTCCATTCCAATATTTGGACTTTTAATATTCTGTGTTGTGCAAATTATTTT ] consensusID : consensus_9749#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 859 fasta sequence [GGATTGTTCTTTCTTGATCCTTGAGTATGCCAATTGTCATTCATTACAAAACGGTAAATTTCAGTGTTAGCATCACTCGATTTTTTTCACTTTTTAATCATTACATTAGAAATACTCAAGGAACAAACCAGATTTGTCCGCTCTTAACCCCCAATTCTTAGTGTTGTTGTTTTCTCTAATCTGAGTAATTTAGATGCCAATCTTCCATTACCGTTCTGGATATAATCGGCGCCTACTTTGAGAGGGAGTAAGCTGTAGTAGCATCACTATACCAGCTGCACCAGTTGCAATTCCTTTGAACTCTACGGCCATTTGTTATCTTAGTCATCATTTCAACCTAGCTTGTCATGTAACCGCAAAATATTTACTTGCGAAAATCTAGAACAGAAAAGATAAGGAATTACGACACTGGTGGGATTAAGAACAAGTAATTGATAGGTCAAATATGTTTAGACGAAAATGGAGTAAATACAGCTACTTCTGTAGAGTGAGGTCTTGCCTGTCATCTAGAAGTTCAGACATCGAAACGAAATTTTCCAAGGATGGTAACTAACAACCATACGCTTCCGCACTTATCTCATATCCAGTCATTGTCTTTACGGAGTAGTGGATTATATTTACTCGACTAACTAGAAGTGTCTTCAATTTCACATTTACTTCTACTGATATCATATCTCGCGGTCTGTGGTTCTGCATGTAGTTATTTTAGTTTGTGTAAGCTTGTGACCAAGAGCTAATCTTTTTTATTTGCTACAACTTCATTCCTCTAAGGTATCAATTTCACAGAGGTTCTACTGAAGACAAATTCAAATGCCCTGGTACGGCTGAGGGTTAGGAAAGTTAGCTCTCCCTCTCGAAG] [+] EMBL CD089070 [GGATTGTTCTTTCTTGATCCTTGAGTATGCCAATTGTCATTCATTACAAAACGGTAAATTTCAGTGTTAGCATCACTCGATTTTTTTCACTTTTTAATCATTACATTAGAAATACTCAAGGAACAAACCAGATTTGTCCGCTCTTAACCCCCAATTCTTAGTGTTGTTGTTTTCTCTAATCTGAGTAATTTAGATGCCAATCTTCCATTACCGTTCTGGATATAATCGGCGCCTACTTTGAGAGGGAGTAAGCTGTAGTAGCATCACTATACCAGCTGCACCAGTTGCAATTCCTTTGAACTCTACGGCCATTTGTTATCTTAGTCATCATTTCAACCTAGCTTGTCATGTAACCGCAAAATATTTACTTGCGAAAATCTAGAACAGAAAAGATAAGGAATTACGACACTGGTGGGATTAAGAACAAGTAATTGATAGGTCAAATATGTTTAGACGAAAATGGAGTAAATACAGCTACTTCTGTAGAGTGAGGTCTTGCCTGTCATCTAGAAG ] [+] EMBL CD089164 [GGATTGTTCTTTCTTGATCCTTGAGTATGCCAATTGTCATTCATTACAAAACGGTAAATTTCAGTGTTAGCATCACTCGATTTTTTTCACTTTTTAATCATTACATTAGAAATACTCAAGGAACAAACCAGATTTGTCCGCTCTTAACCCCCAATTCTTAGTGTTGTTGTTTTCTCTAATCTGAGTAATCTAGATGCCAATCTTCCATTACCGTTCTGGATATAATCGGCGCCTACTTTGAGAGGGAGTAAGCTGTAGTAGCATCACTATACCAGCTGCACCAGTTGCAATTCCTTTGAACTCTACGGCCATTTGTTATCTTAGTCATCATTTCAACCTAGCTTGTCATGTAACCGCAAAATATTTACTTGCGAAAATCTAGAACAGAAAAGATAAGGAATTACGACACTGGTGGGATTAAGAACAAGTAATTGATAGGTCAAATATGTTTAGACGAANATGGAGTAAATACAGCT ] [-] EMBL CD089204 [ ATCTTAGTCATCATTTCAACCTAGCCTGTCATGTAACCGCAAAATATTTACTTGCGANAATCTAGAACAGAAAAGATAAGGAATTACGACACTGGTGGGATTAAGAACAAGTAATTGATAGGTCAAATATGTTTAGACGAAAATGGAGTAAATACAGCTACTTCTGTAGAGTGAGGTCTTGCCTGTCATCTAGAAGTTCAGACATCGAAACGAAATTTTCCAAGGATGGTAACTAACAACCATACGCTTCCGCACTTATCTCATATCCAGTCATTGTCTTTACGGAGTAGTGGATTATATTTACTCGACTAACTAGAAGTGTCTTCAATTTCACGTTTACTTCTACTGATATCATATCTCGCGGTCTGTGGTTCTGCATGTAGTTATTTTAGTTTGTGTAAGCTTGTGACCAAGAGCTAATCTTTTTTATTTGCTACAACTTCATTCCTCTAAGGTATCAATTTCACAGAGGTTCTACTGAAGACAAATTCAAATGCCCTGGTACGGCTGAGGGTTAGGAAAGTTAGCTCTCCCTCTCGAAG] [-] EMBL CD089119 [ TCTTAGTCATCATTTCAACCTAGCTTGTCATGTANCCGCAAAATATTTACTTGCGAAAATCTAGAACAGAAAAGATAAGGAATTNCGACACTGGTGGGATTAAGAACAAGTAATTGATAGGTCAAATATGTTTAGACGAAAATGGAGTAAATACAGCTACTTCTGTAGAGTGAGGTCTTGCCTGTCATCTAGAAGTTCAGACATCGAAACGAAATTTTCCAAGGATGGTAACTAACAACCATACGCTTCCGCACTTATCTCATATCCAGTCATTGTCTTTACGGAGTAGTGGATTATATTTACTCGACTAACTAGAAGTGTCTTCAATTTCACATTTACTTCTACTGATATCATATCTCGCGGTCTGTGGTTCTGCATGTAGTTATTTTAGTTTGTGTAAGCTTGTGACCAAGAGCTAATCTTTTTTATTTGCTTCAACTTCATTCCTCTAAGGTATCAATTTCACAGAGGTTCTACTGAAGACAAATTCAAATGCCCTGGTACGGCTGAGGGTTAGGAAAGTTAGCTCTCCCTCTCGAAG] [-] EMBL CD089121 [ tgtatnnCTTAGTCATCATTTCAACCTAGCTTGTCATGTANCCGCAAAATATTTACNTGCGAAAATCTAGAACAGAAAAGATAAGGAATTACGACACTGGTGGGATTAAGAACAAGTAATTGATAGGTCAAATATGTTTAGACGAAAATGGAGTAAATACAGCTACTTCTGTAGAGTGAGGTCTTGCCTGTCATCTAGAAGTTCAGACATCGAAACGAAATTTTCCAAGGATGGTAACTAACAACCATACGCTTCCGCACTTATCTCATATCCAGTCATTGTCTTTACGGAGTAGTGGATTATATTTACTCGACTAACTAGAAGTGTCTTCAATTTCACATTTACTTCTACTGATATCATATCTCGCGGTCTGTGGTTCTGCATGTAGTTATTTTAGTTTGTGTAAGCTTGTGACCAAGAGCTAATCTTTTTTATTTGCTACAACTTCATTCCTCTAAGGTATCAATTTCACAGAGGTTCTACTGAAGACAAATTCAAATGCCCTGGTACGGCTGAGGGTTAGGAAAGTTAGCTCTCCCTCTCGAAG] consensusID : consensus_9749#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 324 fasta sequence [CATGAAAATATCATACACTTGATTGGTGCTGGACCTTCACTTCCATCGGATTGTTCTTTCTTGATCCTTGAGTATGCCAATTGTCATTCATTACAAAACGTTTTGTATGACTTCCCTGGAGTTCATTATAACCTGGTCAATACTTTGAATTGGATATTGCAAATCAGTCGCGCTTCAGACTATTTACATCATTCATGTTCCCCCCCGGTTATACATGCAGATATAAAACCGTCCAATATTTTAGGTTTTGATAGATTGCGTTTAGTTAAATTAGGTGATTTTGGATCATCTAGAACTAATTTATCTGACGAACCTTCCGTATNT] [+] EMBL CD196235 [CATGAAAATATCATACACTTGATTGGTGCTGGACCTTCACTTCCATCGGATTGTTCTTTCTTGATCCTTGAGTATGCCAATTGTCATTCATTACAAAACGTTTTGTATGACTTCCCTGGAGTTCATTATAACCTGGTCAATACTTTGAATTGGATATTGCAAATCAGTCGCGCTTCAGACTATTTACATCATTCATGTTCCCCCCCGGTTATACATGCAGATATAAAACCGTCCAATATTTTAGGTTTTGATAGATTGCGTTTAGTTAAATTAGGTGATTTTGGATCATCTAGAACTAATTTATCTGACGAACCTTCCGTATNT] [+] EMBL CD196189 [CATGAAAATATCATACACTTGATTGGTGCTGGACCTTCACTTCCATCGGATTGTTCTTTCTTGATCCTTGAGTATGCCAATTGTCATTCATTACAAAACGTTTTGTATGACTTCCCTGGAGTTCATTATAACCTGGTCAATACTTTGAATTGGATATTGCAAATCAGTCGCGCTTCAGACTATTTACATCATTCATGTTCCCCCCCGGTTATACATGCAGATATAAAACCGTCCAATATTTTAGGTTTTGATAGATTGCGTTTAGTTAAATTAGGTGATTTTGGATCATCTAGAACTAATTTATCTGACGAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9749#0 --------------------------------------------------CGGCTCGAGG 10 consensus_9749#2 CATGAAAATATCATACACTTGATTGGTGCTGGACCTTCACTTCCATCGGATTGTTCTTTC 60 consensus_9749#1 -----------------------------------------------GGATTGTTCTTTC 13 * ** consensus_9749#0 ACGATCCTTGAGTATGCCAATTGTCATTCATTATAAA-CG------TTTTGTATGA-CTT 62 consensus_9749#2 TTGATCCTTGAGTATGCCAATTGTCATTCATTACAAAACG------TTTTGTATGA-CTT 113 consensus_9749#1 TTGATCCTTGAGTATGCCAATTGTCATTCATTACAAAACGGTAAATTTCAGTGTTAGCAT 73 ******************************* *** ** ** ** * * * * consensus_9749#0 CCCTGGAGTTCATT-ATAACCTGGTCAATACTTT-GAATTGGATATTG--CAAATCAG-- 116 consensus_9749#2 CCCTGGAGTTCATT-ATAACCTGGTCAATACTTT-GAATTGGATATTG--CAAATCAG-- 167 consensus_9749#1 CACTCGATTTTTTTCACTTTTTAATCATTACATTAGAAATACTCAAGGAACAAACCAGAT 133 * ** ** ** ** * * *** *** ** *** * * * **** *** consensus_9749#0 ----TCGCGCTTCAGACT--ATTTACATCATTCATGTTCCCCCCCGGTTATACA-TGCAG 169 consensus_9749#2 ----TCGCGCTTCAGACT--ATTTACATCATTCATGTTCCCCCCCGGTTATACA-TGCAG 220 consensus_9749#1 TTGTCCGCTCTTAACCCCCAATTCTTAGTGTTGTTGTTTTCTCTAATCTGAGTAATTTAG 193 *** *** * * *** * ** **** * * * * * ** consensus_9749#0 ATATAAAACCGTCCAATAT--TTTAGGTTTTGATAGAT---TGCGTTTAGTTAAATTAGG 224 consensus_9749#2 ATATAAAACCGTCCAATAT--TTTAGGTTTTGATAGAT---TGCGTTTAGTTAAATTAGG 275 consensus_9749#1 ATGCCAA-TCTTCCATTACCGTTCTGGATATAATCGGCGCCTACTTTGAGAGGGAGTAAG 252 ** ** * **** ** ** ** * * ** * * * ** ** * ** * consensus_9749#0 TGATTTTGGATCATCTAGAACTAATTTATCTGACGAACCTTCCGTA---TTTGGAACTCT 281 consensus_9749#2 TGATTTTGGATCATCTAGAACTAATTTATCTGACGAACCTTCCGTA---TNT-------- 324 consensus_9749#1 CTGTAGTAGCATCACTATACCAGCTGCACCAGTTGCAATTCCTTTGAACTCTACGGCCAT 312 * * * *** * * * * * * * * * * * * * consensus_9749#0 GTGTTATATGGCCCCAGAACTATGGACAGTTCGAAGTGGTGAAAAATTACCGTACTCAGA 341 consensus_9749#2 ------------------------------------------------------------ consensus_9749#1 TTGTTATCTTAGTCATCATTTCAACCTAGCTTGTCATGTAACCGCAAAATATTTACTTGC 372 consensus_9749#0 AAAATCTGATGTCTACAGTTTAACAGTTACATTTTGGGAATTTCTAGCTCGTGAACCTCC 401 consensus_9749#2 ------------------------------------------------------------ consensus_9749#1 GAAAATCTAGAACAGAAAAGATAAGGAATTACGACACTGGTGGGATTAAGAACAAGTAAT 432 consensus_9749#0 AAATAAAATCCTGAAAAGACGTGATGTAGCAGACAAGTTTTGGTCTTCTATTACTCAGCG 461 consensus_9749#2 ------------------------------------------------------------ consensus_9749#1 TGATAGGTCAAATATGTTTAGACGAAAATGGAGTAAATACAGCTACTTCTGTAGAGTGAG 492 consensus_9749#0 ACCACCTACATTAGCTGGGTGTCCTGAACTACTAAGCATCATTATTGAGAGTGGTTGGGC 521 consensus_9749#2 ------------------------------------------------------------ consensus_9749#1 GTCTTGCCTGTCATCTAGAAGTTCAGACATCGAAACGAAATTTTCCAAGGATGGTAACTA 552 consensus_9749#0 TGTAAATCCCATGGTGCGACCTACAATGTTCCAACTGAGCAAATGTTTGACTCCTATAAT 581 consensus_9749#2 ------------------------------------------------------------ consensus_9749#1 ACAACCATACGCTTCCGCACTTATCTCATATCCAGTCATTGTCTTTACGGAGTAGTGGAT 612 consensus_9749#0 CGAACAAATATTTCCAATAGATAGCATTATCCAGGGTATTGATATCCCTGATGACTGTTT 641 consensus_9749#2 ------------------------------------------------------------ consensus_9749#1 TATATTTACTCGACTAACTAGAAGTGTCTTCAATTTCACATTTACTTCTACTGA-TATCA 671 consensus_9749#0 AAACTTTTTAAAGAAATTGTAGCATATTGCACTTTAAGAGTGTATATAGTTCGAGACAGT 701 consensus_9749#2 ------------------------------------------------------------ consensus_9749#1 TATCTCGCGGTCTGTGGTTCTGCATGTAGTTATTTTAGTTTGTGTAAGCTTGTGACCAAG 731 consensus_9749#0 GTTCCCTGTTTCCTTAAACTTCTGAGTACATGTGAAGTAATCTTACAGTATCCATTTGGT 761 consensus_9749#2 ------------------------------------------------------------ consensus_9749#1 AGCTAATCTTTTTTATTTGCTACAACTTCATTCCTCTAAGGTATCAATTTCACAGAGGTT 791 consensus_9749#0 TAGCCGTGCCTAATAGTAGTTCACACTACAAATGTTTGTCATTCGAAGACTTCACTAACT 821 consensus_9749#2 ------------------------------------------------------------ consensus_9749#1 CTACTGAAGACAAATTCAAATGCCCTGGTACGGCTGAGGGTTAGGAAAGTTAGCTCTCCC 851 consensus_9749#0 TTGTAGTTCCATTCCAATATTTGTACTTTTAATATTCTGTGTTGTGCAAATTATTTTTTT 881 consensus_9749#2 ------------------------------------------------------------ consensus_9749#1 TCTCGAAG---------------------------------------------------- 859 consensus_9749#0 AT 883 consensus_9749#2 -- consensus_9749#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||