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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9757#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 879 fasta sequence
[TAAATCAGATGATTATAGTTTAGATGGAGAATGGACAGAGTCAGGTTCAAGGGATGAAGAGTTTGAAATCGGTACTGAAGAAATCGATGAAGACGACGATATTGATGAGGGTGATGAAGAATATGAAGAGGATGATGACGTTGATGGAGATCTATGTGATTTTGATGAACTCAAAGATCTAGAAGATGAAATGGACAATGAAGCCTTTGATATTGAAGAAGAAGATTTGTCAGCTACACTGAATCCCGCTGCTCATCAATTAACTGAAAGAGTGTCGGAGATAAAAATGTCTGAAGGCTCTACCGATTCAGATATACTAAAAACTCAAAAAGATAATGCCGAAAATGTTAGTGTAGATGAATGTGTTTCTCGTGAACTTTCTGCAGTTGACTATAATGACAACCAAGCTATGTCATCTAGAACTTGTCCACCAGTTAATTCTAATTCACAAGATAACTATCGCCTAACTTCAGTAAGTGTTAGTCAACTCAGTCCGAAATCACAAAATCTGGTTAATTCTTTGGATCCTTCTGTTGATACTGTATCAGCTGAAGCAGCTCGTGTTTCAAATGTTGTTCATTCATCAAATAAAGAACTCGGTCCTCATATTGATTTGTTGTCTGCTCAATCACCTCAGGAACAGTCAACGGAATTATCTGTGACAACTAGCTTGGTAGGGCAAAATGCTAATTCTGCTACACAAGCTACTACACCAGCGGGTTTAAATGAAGCCGCAGATCTTATGTTTATGGATGATTACTTATTTGGATTTGGCGATTTGGCTTCTACAGATGAAACTGACTTAAACGATATAACCCCTCAACAAGTATCTGCAGATCATGTAACAGATCAATTACAAGCTCCAAGTCTTTTATCAGT]
[-] EMBL CD170747 [TAAATCAGATGATTATAGTTTAGATGGAGAATGGACAGAGTCAGGTTCAAGGGATGAAGAGTTTGAAATCGGTACTGAAGAAATCGATGAAGACGACGATATTGATGAGGGTGATGAAGAATATGAAGAGGATGATGACGTTGATGGAGATCTATGTGATTTTGATGAACTCAAAGATCTAGAAGATGAAATGGACAATGAAGCCTTTGATATTGAAGAAGAAGATTTGTCAGCTACACTGAATCCCGCTGCTCATCAATTAACTGAAAGAGTGTCGGAGATAAAAATGTCTGAAGGCTCTACCGATTCAGATATACTAAAAACTCAAAAAGATAATGCCGAAAATGTTAGTGTAGATGAATGTGTTTCTCGTGAACTTTCTGCAGTTGACTAT ]
[+] EMBL CD085975 [ AGACGACGATATTGATGAGGGTGATGAAGAATATGAAGAGGATGATGACGTTGATGGAGATCTATGTGATTTTGATGAACTCAAAGATCTAGAAGATGAAATGGACAATGAAGCCTTTGATATTGAAGAAGAAGGTTTGTCAGCTACACTGAATCCCGCTGCTCATCAATTAACTGAAAGAGTGTCGGAGATAAAAATGTCTGAAGGCTCTACCGATTCAGATATACTAAAAACTCAAAAAGATAATGCCGAAAATGTTAGTGTAGATGAATGTGTTTCTCGTGAACTTTCTGCAGTTGACTATAATGACAACCAAGCTATGTCATCTAGAACTTGTCCACCAGTTAATTCTAATTCACAAGATAACTATCGCCTAACTTCAGTAAGTGTTAGTCAACTCAGTCCGAAATCACAAAATCTGGTTAATTCTTTGGATCCTTCTGTTGATACTGTATCAGCTGAAGCAGCTCGTGTTTCAAATGTTGTTCATTCATCAAATA ]
[+] EMBL CD086175 [ AGACGACGATATTGATGAGGGTGATGAAGAATATGAAGAGGATGATGACGTTGATGGAGATCTATGTGATTTTGATGAACTCAAAGATCTAGAAGATGAAGTGGACGTTGTAGCCTTTGGTATTGAAGAAGAAGATTTGTCAGCTACACTGAATCCCGCTGCTCATCATTTAACTGAAAGAGTGTCGGAGATCCAACTGTCTGAAGGCTCTACCGATTCAGATc ]
[+] EMBL CD086095 [ GATGATGACGTTGATGGAGATCTATGTGATTTTGATGAACTCAAAGATCTAGAAGATGAAATGGACAAAGAAGCCTTTGATATTGAAGAAGAAGATTTGTCAGCTACACTGAATCCCGCTGCTCATCAATTAACTGAAAGAGTGTCGGAGATAAAAATGTCTGAAGGCTCTACCGATTCAGATATACTAAAAACTCAAAAAGATAATGCCGAAAATGTTAGTGTAGATGAATGTGTTTCTCGTGAACTTTCTGCAGTTGACTATAATGACAACCAAGCTATGTCATCTAGAACTTGTCCACCAGTTAATTCTAATTCACAAGATAACTATCGCCTAACTTCAGTAAGTGTTAGTCAACTCAGTCCGAAATCACAAAATCTGGGTAATTCTTTGGATCCTTCTGTTGATACTGTGTCAGCTGAAGCAG ]
[-] EMBL CD065547 [ CTATAATGACAACCAAGCTATGTCATCTAGAACTTGTCCACCAGTTAATTCTAATTCACAAGATAACTATCGCCTAACTTCAGTAAGTGTTAGTCAACTCAGTCCGAAATCACAAAATCTGGTTAATTCTTTGGATCCTTCTGTTGATACTGTATCAGCTGAAGCAGCTCGTGTTTCAAATGTTGTTCATTCATCAAATAAAGAACTCGGTCCTCATATTGATTTGTTGTCTGCTCAATCACCTCAGGAACAGTCAACGGAATTATCTGTGACAACTAGCTTGGTAGGGCAAAATGCTAATTCTGCTACACAAGCTACTACACCAGCGGGTTTAAATGAAGCCGCAGATCTTATGTTTATGGATGATTACTTATTTGGATTTGGCGATTTGGCTTCTACAGATGAAACTGACTTAAACGATATAACCCCTCAACAAGTATCTGCAGATCATGTAACAGATCAATTACAAGCTCCAAGTCTTTTATCAGT]
[-] EMBL CD139431 [ AATTCTAATTCACAAGATAACTATCGCCTAACTTCAGTAAGTGTTAGTCAACTCAGTCCGAAATCACAAAATCTGGTTAATTCTTTGGATCCTTCTGTTGATACTGTATCAGCTGAAGCAGCTCGTGTTTCAAATGTTGTTCATTCATCAAATAAAGAACTCGGTCCTCATATTGTTTTGTTGTCTGCTCAATCACCTCAGGAACAGTCAACGGAATTATCTGTGACAACTAGCTTGGTAGGGCAAAATGCTAATTCTGCTACACAAGCTACTACACCAGCGGGCTTAAATGAAGCCGCGGATCTTATGTTTATGGATGATTACTTATTTGGATTTGGCGATTTGGCTTCTACAGATGAAACTGACTTAAACGATATAACCCCTCAACAAGTATCTGCAGATCATGTAACAGATCAAT ]
[-] EMBL CD167275 [ GAATTATCTGTGACAACTAGCTTGGTAGGGCAAAATGTTAATTCTGCTACACAAGCTACTACACCAGCGGGTTTAAATGAAGCCGCAGATCTTATGTTTATGGATGATTACTTATTTGGATTTGGCGATTTGGCTTCTACAGATGAAACTGACTTAAACGATATAACCCCTCAACAAGTATCTGCAGATCATGTAACAGATCAATTACAAGCTCCAAGTCCTTTATCAGT]
consensusID : consensus_9757#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 562 fasta sequence
[GATGGCTGTAACT-TCAACTGCAAGCACGG-GGGCGTACTTCATTATGCATCAGTCGTAATAGTTCCGCTGGTTCTGTACCAGCTAACGGGAAAACCACCACAAACAATTCTAATCGTAATCGACCACTAAAAAATCTTGGTATTGGTGGCTTTCGAGCTAAACCCAATCGTTGGTTGCGGGCTAAAAAAATACAGCTTGCAG-CCGCATCTGATCATTTTGTTGGACCTCTCACGTCTGACAACAAACGTAGACGTCAGAACAAGAAGAAATCTGAATTGGAAGACCATTATCCTAACTATTTAATGAAAGCTTTTTATGGGGCATGTCTACTTTCCGCTAAGAGAAAACCTCTGAGGAAGAAAAAGCGCATACGTCCAATTAGCTCATCACAAGAACTTATAGTTGGTCCTGAGTCTGTAAGTGGAATCAAACAGAACAAAGGTGGACTTACTCTTTCTGTTCGTTCTTCTAAACCAACTAAAGGTGGAGCACTCATGAAAAAGTGTGATGTTGCCCGTCTTGGAAATCGACCTAAATCAGATGATTATAGTTTAGATGGAGA]
[+] EMBL CD065443 [GATGGCTGTAACT TCAACTGCAAGCACGG GGGCGTACTTCATTATGCATCAGTCGTAATAGTTCCGCTGGTTCTGTACCAGCTAACGGGAAAACCACCACAAACAATTCTAATCGTAATCGACCACTAAAAAATCTTGGTATTGGTGGCTTTCGAGCTAAACCCAATCGTTGGTTGCGGGCTAAAAAAATACAGCTTGCAG CCGCATCTGATCATTTTGTTGGACCTCTCACGTCTGACAACAAACGTAGACGTCAGAACAAGAAGAAATCTGAATTGGAAGACCATTATCCTAACTATTTAATGAAAGCTTTTTATGGGGCATGTCTACTTTCCGCTAAGAGAAAACCTCTGAGGAAGAAAAAGCGCATACGTCCAATTAGCTCATCACAAGAACTTATAGTTGGTCCTGAGTCTGTAAGTGGAATCAAACAGAACAAAGGTGGACTTACTCTTTCTGTTCGTTCTTCTAAACCAACTAAAGGTGGAGCACTCATGAAAAAGTGTGATGTTGCNCGTCTTGGAAATCGA ]
[+] EMBL CD065427 [ TGGCTGTAACTATCAA TGCAAG ACGGCACGCGTACTTCATTATGCATCAGTCGTAATAGTTCCGCTGGTTCTGTACCAGCTAACGGGAAAACCACCACAAACAATTCTAATCGTAATCGACCACTAAAAAATCTTGGTATTGGTGGCTTTCGAGCTAACCCCAATCGTTGGTCGCAAACTAAAAAAATACAGCTTGCAGCCCGCA ]
[+] EMBL CD114944 [ TGGACCTCTCACGTCTGACAACAAACGTAGACGTCAGAACAAGAAGAAATCTGAATTGGAAGACCATTATCCTAACTATTTAATGAAAGCTTTTTATGGGGCATGTCTACTTTCCGCTAAGAGAAAACCTCTGAGGAAGAAAAAGCGCATACGTCCAATTAGCTCATCACAAGAACTTATAGTTGGTCCTGAGTCTGTAAGTGGAATCAAACAGAACAAAGGTGGACTTACTCTTTCTGTTCGTTCTTCTAAACCAACTAAAGGTGGAGCACTCATGAAAAAGTGTGATGTTGCCCGTCTTGGAAATCGACCTAAATCAGATGATTATAGTTTAGATGGAGA]
[+] EMBL CD179763 [ AGCGCATACGTGCGATTAGCTCATCACAAGAACTTATAGCTGGTCCTGAGTCTGTAAGCGGAATCAAACAGAACAAAGGTGGACTTACTCTTTCTGTTCGTTCTTCTAAACCAACTAAAGGTGGAGCACTCATGAAAAAGTGTGATGTTGCCCGTCTTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9757#0 TAAATCAGATGATTATAGTTTAGATGGAGAATGGACAGAGTCAGGTTCAAGGGATGAAGA 60
consensus_9757#1 -------GATGGCTGTAACTTCAACTGCAAGC--ACGGGGGCGTACTTCA---------- 41
**** * ** ** * * * ** * * * * *
consensus_9757#0 GTTTGAAATCGGTACTGAAGAAATCGATGAAGACGACGATATTGATGAGGGTGATGAAGA 120
consensus_9757#1 -TTATGCATCAGTCGTAATAGTTCCGCTGGTTCTG----TACCAGCTAACGGGAAAACCA 96
** *** ** * * ** ** * ** * * ** * *
consensus_9757#0 ATATGAAGAGGATGATGACGTTGATGGAGATCTATGTGATTTTGATGAACTCAAAGATCT 180
consensus_9757#1 CCACAAACA--ATTCTAATCGTAATCGACCACTAAAAAATCTTGGTA---TTGGTGGCTT 151
* ** * ** * * * ** ** *** ** *** * * * *
consensus_9757#0 AGAAGATGAAATGGACAATGAAGCCTTTGATATTGAAGAAGAAGATTTGTCAGCTACACT 240
consensus_9757#1 TCGAGCTAAACC---CAATCGTTGGTTGCGGGCTAAAAAAATACAGCTTGCAGCCGCATC 208
** * ** **** ** * ** ** * * * **** **
consensus_9757#0 GAATCCCGCTGCTCATCAATTAACTGAAAGAGTGTCGGAGATAAAAATGTCTGAAGGCTC 300
consensus_9757#1 TGATCATTTTGTTGGACCTCTCAC---------GTCTGACA-ACAAACGT----AGACGT 254
*** ** * * * ** *** ** * * *** ** ** *
consensus_9757#0 TACCGATTCAGATATACTAAAAACTCAAAAAGATAATGCCGAAAATGTTAGTGTAGATGA 360
consensus_9757#1 CA--GAACAAGAAGAAATCTGAATT-GGAAGACCATTATCCTAACTATTTA-----ATGA 306
* ** *** * * ** * ** * * * ** * ** ****
consensus_9757#0 ATGTGTTTCTCGTGAACTTTCTGCAGTTGACTATAATGACAACCAAGCTATGTCATCTAG 420
consensus_9757#1 AAGCTTTTTATGGGGCATGTCTACTTTCCGCTA-AGAGAAAACCT--CTGAGGAAGAAAA 363
* * *** * * * *** * * *** * ** **** ** * * *
consensus_9757#0 AACTTGTCCA-CCAGTTAATTCTAATTCACAAGATAACTATCGCCTAACTTCAGTAAGTG 479
consensus_9757#1 AGCGCATACGTCCAATTAGCTCA---TCACAAGA-ACTTATAGTTGGTCCTGAGT--CTG 417
* * * * *** *** ** ******** * *** * * * *** **
consensus_9757#0 TTAGTCAACTCAGTCCGAAATCACAAAATCTGGTTAATTCTTTGGATCCTTCTGTTGATA 539
consensus_9757#1 TAAGTGGAATCAAACAGAA--CA-AAGGTGGACTTACTCTTTCTGTTCGTTCTTCTAAAC 474
* *** * *** * *** ** ** * *** * ** * ** **** * *
consensus_9757#0 CTGTATCAGCTGAAGCAGCTCGTGTTTCAAATGTTGTTCATTCATCAAATAAAGAACTCG 599
consensus_9757#1 CAACTAAAGGTGGAGCA-CTCATG----AAAAAGTGTGATGTTGCCCGTCTTGGAAATCG 529
* ** ** **** *** ** *** *** * * *** ***
consensus_9757#0 GTCCTCATATTGATTTGTTGTCTGCTCAATCACCTCAGGAACAGTCAACGGAATTATCTG 659
consensus_9757#1 ACC--TAAATCAGATGATTATAGTTTAGATGGAGA------------------------- 562
* * ** * ** * * **
consensus_9757#0 TGACAACTAGCTTGGTAGGGCAAAATGCTAATTCTGCTACACAAGCTACTACACCAGCGG 719
consensus_9757#1 ------------------------------------------------------------
consensus_9757#0 GTTTAAATGAAGCCGCAGATCTTATGTTTATGGATGATTACTTATTTGGATTTGGCGATT 779
consensus_9757#1 ------------------------------------------------------------
consensus_9757#0 TGGCTTCTACAGATGAAACTGACTTAAACGATATAACCCCTCAACAAGTATCTGCAGATC 839
consensus_9757#1 ------------------------------------------------------------
consensus_9757#0 ATGTAACAGATCAATTACAAGCTCCAAGTCTTTTATCAGT 879
consensus_9757#1 ----------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||