These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1228 fasta sequence [CTTCCAGGTGACAAAGAAAAAGGTCTGCTAGCAATCGAAGCCATAGAAGCAAACCTACATGCACCACGTGGTACCGTGTGGGAAGACGAAAGTCCACACGAAGCACCTGTTATTCTTCAGCAACCACAATTCGTTGGTGAAATTGAGGAAGGGACTGCTATTCACTTTGATGTTCAGGTAGAACCAGCTGCTGATCCTTCACTTATTGTTGAATGGTTTAAAAGTGGCAATTTATTAACAAGTGGAACAAGATTCAAAGTTGCTTATGAAAGAGGATTAGCCATATTAGATTTATTGTATACTATTCCTGAAGATAGCGGTGAATATTGGTGTCGAGTAGAGAATAAAGCTGGTCAAGTGGAAAGTAATCATGTACAAGTTTTATGTAATCCTAGTGCATCTGTAATCACACACAGCAATCTTCTACAAGGTTCAGAAGGTTACAATCTAATAAAGGCTATTGAAGAAGTCGACCAGCCCGACGGCGATGAATACAGGTACATAGAAGATGAAGAAGTTGATTCAGCTCCCAACTTTGACGTAAAGCCTCAACCTGCTACAATAGCTGAAGGTTCTCCAGTTAAATTTTTAGTACGTGTTAGTGGCAAGCCAACACCACAATTGACTTGGTACCTGAATGATGAACCAATTGAACAAGATTCAATTACAAAAATTTATAGTGATGGTGCCATAAACTATCTAGAAATGAATCGTTGTCCTGCTTTGCAAGGAACTAATAAATTACATGTTATTGCAGAAAATCAATTAGGTAAAGCTGAAGCTGAAACTATTCTCACCGTTTTATTGGCAGAAGATTTCAGACCGGATTTAAAACATGTTAAACCAGAAAATCCATACAAAAAGATGGTTGGATTACGTAAAGTAGACTGTTCTCCAGAATTGAACAAAGCTTTAACAAGAACTAAACCATCTGCACAAACAATTATGGAAATGGAAAGAGGTTCTGAAATGAAAGCACGTATGTATCGTTCACCAGAAGTAATTGAAGCAGAAAAGATGTTGGATCAACTTGCTTTAAATTTGAAAAAATCTGAAGTCAAACGACCTTTGGTAAAT-GGT-GGTGGTCATCAAAATGATTAAGCTTAA-TTCTGCC-AGAAGCTTCAATACATAAACTCATTTNCAT-ACATTGGAAACT-AATNANNTCTA-TTACANNATG-TTATTTACTACACATGACATCAATTACAAACAGTCCAACTTTGATATATGT] [-] EMBL CD196103 [CTTCCAGGTGACAAAGAAAAAGGTCTGCTAGCAATCGAAGCCATAGAAGCAAACCTACATGCACCACGTGGTCCCGTGTGGGAAGACGAAAGTCCACACGAAGCACCTGTTATTCTTCAGCAACCACAATTCGTTGGTGAAATTGAGGAAGGGACTGCTATTCACTTTGATGTTCAGGTAGAACCAGCTGCTGACCCTTCACTTATTGTTGAATGGTTTAAAAGTGGCAATTTATTAACAAGTGGAACAAGATTCAA ] [+] EMBL CD183886 [ CTACTAGCAATCGAAGCCATAGAAGCAAACCTACATGCACCACGTGGTACCGTGTGGGAAGACGAAAGTCCACACGAAGCACCTGTTATTCTTCAGCAACCACAATTCGTTGGTGAAATTGAGGAAGGGACTGCTATTCACTTTGATGTTCAGGTAGAACCAGCTGCTGATCCTTCACTTATTGTTGAATGGTTTAAAAGTGGCAATTTATTAACAAGTGGAACAAGATTCAAAGTTGCTTATGAAAGAGGATTAGCCATATTAGATTTATTGTATACTATTCCTGAAGATAGCGGTGAATATTGGTGTCGAGTAGAGAATAAAGCTGGTCAAGTGGAAAGTAATCATGTACAAGTTTTATGTAATCCTAGTGCATCTGTAATCACACACAGCAATCTTCTACAAGGTTCAGAAGGTTACAATCTAATAAAGGCTATTGAAGAAGTCGACCAGCCCGACGGCGATGAATACAGGTACATAGAAGATGAAGAAGTTGATTCAGCTCCCAACTTTGACGTANAGCCTCAACCTGCTACAATAGCTGAAGGTTCTCTAGTTAAA TTTTAGTACGTGTTAATGGCAAGCC ] [+] EMBL AI977605 [ AGCAATCGAAGCCATAGAAGCAAACCTACATGCACCACGTGGTACCGTGTGGGAAGACGAAAGTCCACACGAAGCACCTGTTATTCTTCAGCAACCACAATTCGTTGGTGAAATTGAGGAAGGGACTGCTATTCACTTTGATGTTCAGGTAGAACCAGCTGCTGATCCTTCACTTATTGTTGAATGGTTTAAAAGTGGCAATTTATTAACAAGTGGAACAAGATTCAAAGTTGCTTATGAAAGAGGATTAGCCATATTAGATTTATTGTATACTATTCCTGAAGATAGCGGTGAATATTGGTGTCGAGTAGAGAATAAAGCTGGTCAAGTGGAAAGTAATCATGTACAAGTTTTATGTAATCCTAGTGCATCTGTAATCACACACAGCAATCTTCTACAAGGTTCAGAAGGTTACAATCTAATAAAGGCTATTGAAGAAGTCGACCAGCTCGACGGCGATGAATACAGGTACATAGAAGATGAAGAAGTTGATTCAGCTCCCAACTTTGACGTAAAGCCTCAACCTGCTACAATA ] [+] EMBL BE431229 [ TATTAGATTTAATGTATACTATTCCTGAAGATAGCGGTGAATATTGGTGTCGAGTAGAGAATAAAGCTGGTCAAGTGGAAAGTAATCATGTACAAGTTTTATGTAATCCTAGTGCATCTGTAATCACACACAGCAATCTTCTACAAGGTTCAGAAGGTTACAATCTAATAAAGGCTATTGAAGAAGTCGACCAGCCCGACGGCGATGAATACAGGTACATAGAAGATGAAGAAGTTGATTCAGCTCCCAACTTTGACGTAAAGCCTCAACCTGCTACAATAGCTGAAGGTTCTCCAGTTAAATTTTTAGTACGTGTTAGTGGCAAG CAACACCACAATTGACTTGGTACCTGAATGATG ACCATTTG AC AGATTCATTTAC AAAATTTATAGTGATGGTTGCACAAACTATCTAGAAATG ATCGTTGT CTGC TTGC AGGGACT ATAAt ] [+] EMBL CD081305 [ cAGGTT AGAAGGTT CAATCTAA AAAGGCTATTGAAGAAGTCGACCAGCCCGACGGCGATGAATACAGGTACATAGAAGATGAAGAAGTTGATTCAGCTCCCAACTTTGACGTAAAGCCTCAACCTGCTACAATAGCTGAAGGTTCTCCAGTTAAATTTTTAGTACGTGTTAGTGGCAAGCCAACACCACAATTGACTTGGTACCTGAATGATGAACCAATTGAACAAGATTCAATTACAAAAATTTATAGTGATGGTGCCATAAACTATCTAGAAATGAATCGTTGTCCTGCTTTGCAAGGAACTAATAAATTACATGTTATTGCAGAAAATCAATTAGGTAAAGCTGAAGCTGAAACTATTCTCACCGTTTTATTGGCAGAAGATTTCAGACCGGATTTAAAACATGTTAAACCAGAAAATCCATACAAAAAGATGGTTGGATTACGTAAAGTAGACTGTTCTCCAGAATTGAACAAAGCTTTAACAAGAACTAAACCATCTGCACAAACAATTATGGAAATGGAAAGAGGTTCTGAAATGAAAGCACGTATGTATCGTTCACCAGAAGTAATTGAAGCAGAAAAGATGTTGGATCAACTTGCTTTAAATTTGAAAAAATCTGAAGTCAAACGACCTTTGGTAAATGGGTGGGTGGTCATCAAAATGATTAAGCTTAANTTCTGCC AGAAGCTTCAATACATAAACTCATTTNCAT ACATTGGAAACT AATNANNTCTA TTACANNATG TTATTTACTACACATGACATCAATTACAAACAGTCCAACTTTGATATATGT] [+] EMBL CD195923 [ AAAGCCTCAACCTGCTACAATAGCTGAAGGTTCTCCAGTTAAATTTTTAGTACGTGTTAGTGGCAAGCCAACACCACAATTGACTTGGTACCTGAATGATGAACCAATTGAACAAGATTCAATTACAAAAATTTATAGTGATGGTGCCATAAACTATCTAGAAATGAATCGTTGTCCTGCTTTGCAAGGAACTAATAAATTACATGTTATTGCAGAAAATCAATTAGGTAAAGCTGAAGCTGANACTATTCTCACCGTTTTATTGGCAGAAGATTTCAGACCGGATTTAAAACATGTTANACCAGGAAATCCATAC ] [-] EMBL CD075137 [ GTTAGTGGCAAGCCAACACCACAATTGACTTGGTACCTGAATGATGAACCAATTGAACAAGATTCAATTACAAAAATTTATAGTGATGGTGCCATAAACTATCTAGAAATGAATCGTTGTCCTGCTTTGCAAGGAACTAATAAATTACATGTTATTGCAGAAAATCAATTAGGTAAAGCTGAAGCTGAAACTATTCTCACCGTTTTATTGGCAGAAGATTTCAGACCGGATTTAAAACATGTTAAACCAGAAAATCCATACAAAAAGATGGTTGGATTACGTAAAGTAGACTGTTCTCCAGAATTGAACAAAGCTTTAACAAGAACTAAACCATCTGCACAAACAATTATGGAAATGGAAAGAGGTTCTGAAATGAAAGCACGTATGTATCGTTCACCAGAAGTAATTGAAGCAGAAAAGATGTTGGATCAACTTGCTTTAAATTTGAAAAAATCTGAAGTCAAACGACCTTTGGTAAAT GGT GGTGGTCATCAAAATGATTAAGCTTAA TTCTGCCAAGAAGCTTCAATACATAAACTCATTTCAATAACATTGG AACTAAATTAATTCTATTTACAAAATGTTTATTTACTACACATGACATCAATTACAAACAGTCCAACTTTGATATAa ] [+] EMBL CD139731 [ AGGTAAAGCTGAAGCTAAAACTATTCTCACCGTTTTATTGGCAGAAGATTTCAGACCGGATTTAAAACATGTTAAACCAGAAAATCCATACAAAAAGATGGTTGGAT ] [+] EMBL SMAA18503 [ TCCAGAATTGAACAAAGCTTTAACAAGAACTAAACCATCTGCACAAACAATTATGGAAATGGAAAGAGGTTCTGAAATGAAAGCACGTATGTATCGTTCACCAGAAGTAATTGAAGCAGAAAAGATGTTGGATCAACTTGCTTTAAATTTGAAAAAATCTGAAGTCAAACGACCTTTGGTAAAT GGT GGTGGTCATCAAAATGATTAAGCTTAA TTCTGCC Aa ] consensusID : consensus_9767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 371 fasta sequence [AATTCGGCACGAGGATCACGTAAAGTAGACTGTTCTCCAGAATTGAACATAGCTTTAACAAGAACTACACCATCTGCACAAACAATTATGGAAATGGAAAGAGGTTCTGAAATGAAAGCACGTATGTATCGTTCACCAGAAGTAATTGAAGCAGAAAAGATGTTGGATCAACTTGCTTTAAATTTGAAAAAATCTGAAGTCAAACGACCTTTGGTAAATGGTGGTGGTCATCAAAATGATTAAGCTTAATTCTGCCAAGAAGCTTCAATACATAAACTCATTTCAATAACATTGGAACTAAATTAATTCTATTTACAAAATGTTTATTTACTACACATGACATCAATTACAAACAGTCCAACTTTGATATA] [+] EMBL CD081418 [AATTCGGCACGAGGATCACGTAAAGTAGACTGTTCTCCAGAATTGAACATAGCTTTAACAAGAACTACACCATCTGCACAAACAATTATGGAAATGGAAAGAGGTTCTGAAATGAAAGCACGTATGTATCGTTCACCAGAAGTAATTGAAGCAGAAAAGATGTTGGATCAACTTGCTTTAAATTTGAAAAAATCTGAAGTCAAACGACCTTTGGTAAATGGTGGTGGTCATCAAAATGATTAAGCTTAATTCTGCCAAGAAGCTTCAATACATAAACTCATTTCAATAACATTGGAACTAAATTAATTCTATTTACAAAATGTTTATTTACTACACATGACATCAATTACAAACAGTCCAACTTTGATATA] [+] EMBL CD084264 [ AGGTTCTGAAATGAAAGCACGTATGTATCGTTCACCAGAAGTAATTGAAGCAGAAAAGATGTTGGATCAACTTGCTTTAAATTTGAAAAAATCTGAAGTCAAACGACCTTTGGTAAATGGTGGTGGTCATCAAAATGATTAAGCTTAATTCTGCCAAGAAGCTTCAATACATAAACTCATTTCAATAACATTGGAACTAAATTAATTCTATTTACAAAATGTTTATTTACTACACATGACATCAATTACAAACAGTCCAACTTTGATATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9767#0 CTTCCAGGTGACAAAGAAAAAGGTCTGCTAGCAATCGAAGCCATAGAAGCAAACCTACAT 60 consensus_9767#1 ------------------------------------------------------------ consensus_9767#0 GCACCACGTGGTACCGTGTGGGAAGACGAAAGTCCACACGAAGCACCTGTTATTCTTCAG 120 consensus_9767#1 ------------------------------------------------------------ consensus_9767#0 CAACCACAATTCGTTGGTGAAATTGAGGAAGGGACTGCTATTCACTTTGATGTTCAGGTA 180 consensus_9767#1 ------------------------------------------------------------ consensus_9767#0 GAACCAGCTGCTGATCCTTCACTTATTGTTGAATGGTTTAAAAGTGGCAATTTATTAACA 240 consensus_9767#1 ------------------------------------------------------------ consensus_9767#0 AGTGGAACAAGATTCAAAGTTGCTTATGAAAGAGGATTAGCCATATTAGATTTATTGTAT 300 consensus_9767#1 ------------------------------------------------------------ consensus_9767#0 ACTATTCCTGAAGATAGCGGTGAATATTGGTGTCGAGTAGAGAATAAAGCTGGTCAAGTG 360 consensus_9767#1 ------------------------------------------------------------ consensus_9767#0 GAAAGTAATCATGTACAAGTTTTATGTAATCCTAGTGCATCTGTAATCACACACAGCAAT 420 consensus_9767#1 ------------------------------------------------------------ consensus_9767#0 CTTCTACAAGGTTCAGAAGGTTACAATCTAATAAAGGCTATTGAAGAAGTCGACCAGCCC 480 consensus_9767#1 ------------------------------------------------------------ consensus_9767#0 GACGGCGATGAATACAGGTACATAGAAGATGAAGAAGTTGATTCAGCTCCCAACTTTGAC 540 consensus_9767#1 ------------------------------------------------------------ consensus_9767#0 GTAAAGCCTCAACCTGCTACAATAGCTGAAGGTTCTCCAGTTAAATTTTTAGTACGTGTT 600 consensus_9767#1 ------------------------------------------------------------ consensus_9767#0 AGTGGCAAGCCAACACCACAATTGACTTGGTACCTGAATGATGAACCAATTGAACAAGAT 660 consensus_9767#1 ------------------------------------------------------------ consensus_9767#0 TCAATTACAAAAATTTATAGTGATGGTGCCATAAACTATCTAGAAATGAATCGTTGTCCT 720 consensus_9767#1 ------------------------------------------------------------ consensus_9767#0 GCTTTGCAAGGAACTAATAAATTACATGTTATTGCAGAAAATCAATTAGGTAAAGCTGAA 780 consensus_9767#1 ------------------------------------------------------------ consensus_9767#0 GCTGAAACTATTCTCACCGTTTTATTGGCAGAAGATTTCAGACCGGATTTAAAACATGTT 840 consensus_9767#1 ------------------------------------------------------------ consensus_9767#0 AAACCAGAAAATCCATACAAAAAGATGGTTGGATTACGTAAAGTAGACTGTTCTCCAGAA 900 consensus_9767#1 ------------------AATTCGGCACGAGGATCACGTAAAGTAGACTGTTCTCCAGAA 42 ** * **** ************************* consensus_9767#0 TTGAACAAAGCTTTAACAAGAACTAAACCATCTGCACAAACAATTATGGAAATGGAAAGA 960 consensus_9767#1 TTGAACATAGCTTTAACAAGAACTACACCATCTGCACAAACAATTATGGAAATGGAAAGA 102 ******* ***************** ********************************** consensus_9767#0 GGTTCTGAAATGAAAGCACGTATGTATCGTTCACCAGAAGTAATTGAAGCAGAAAAGATG 1020 consensus_9767#1 GGTTCTGAAATGAAAGCACGTATGTATCGTTCACCAGAAGTAATTGAAGCAGAAAAGATG 162 ************************************************************ consensus_9767#0 TTGGATCAACTTGCTTTAAATTTGAAAAAATCTGAAGTCAAACGACCTTTGGTAAATGGT 1080 consensus_9767#1 TTGGATCAACTTGCTTTAAATTTGAAAAAATCTGAAGTCAAACGACCTTTGGTAAATGGT 222 ************************************************************ consensus_9767#0 GGTGGTCATCAAAATGATTAAGCTTAATTCTGCCA-GAAGCTTCAATACATAAACTCATT 1139 consensus_9767#1 GGTGGTCATCAAAATGATTAAGCTTAATTCTGCCAAGAAGCTTCAATACATAAACTCATT 282 *********************************** ************************ consensus_9767#0 TNCATA-CATTGGAAACTAATNANNTCTATT-ACANNATGTT-ATTTACTACACATGACA 1196 consensus_9767#1 TCAATAACATTGGAACTAAATTAATTCTATTTACAAAATGTTTATTTACTACACATGACA 342 * *** ******** *** * ****** *** ***** ***************** consensus_9767#0 TCAATTACAAACAGTCCAACTTTGATATATGT 1228 consensus_9767#1 TCAATTACAAACAGTCCAACTTTGATATA--- 371 ***************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||