These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9768#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1176 fasta sequence [ATTGATCATAACCAATAAGAATAATTAATGAAGTATACAACAATATTTGTTATTATGCATTAAAACAACTTGGTTGGTTGTTAACAACAGAAAATGTAATATTGATTTTGAGAATAAATAATTGCATGAATTGATTCTGATAAAATTGTTTGAGTAATGAAATTTATTAACGGTATCTATAGGTATTATCAACGACGCGCAGGAATGGATGGTGGTACTAGTGGAAAACTTGTCATAGAGTTAATTATTCCAGGAGAATTGGAATCTTTCACGACCGGGAACATGTCAGCTGGATATAACCGTTGCGGAATCAATGGGGAAGGCAGTTGTCCAGAACTTGTTTTAGCAGGAACTGATGGTACTTGTCTGGGAGCAGAACCTTTGATTGAACCCGTA-CTATTTGTAGAACTCCATCCACCAGGAGGAGGTGGTGCTGGTGGACGACGATTGGCTGTTGGACTAGGAGGAGGAAGTGTACCTGTAGATCCAGGAGCAGTCAAACCACCAGG-AATATCACTCAGTAACCAGTCGTCATTGACTGGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCACTTATAATATTCAATGCTTCTTTCATAGCATCATAAACACGGACCATTTCATCGCGTTTTTGTTGAACCCCCAATGATTCAGACATTAATGAATTCAGGTCACCAGCCTGATATAAATTTGGTAATAGTTCACCTTTTAAGAAGGATTTAATCTCATTAACAAGCATATGCATTAACAATTTTGGCACCAAATCTAACTGCGTTTTAATCACAATTTTCATGTATGAATCGACTAGATTTCGTATGATTTCTACTTGACG-TTCAAGCTGAGGCTCACTGGCTTCAAGTGATGAACTGTCAGATTGCTCTGTTTTTTCCGATTTAGTTTTAGCTGGATAAACACCAGCACGCAAAAACGATGCCTTCCATGAATCAACTAATTCAGCTGATTCAGCACACAACTCCAATTGTTTATAGTCTTTGTAGACATTATGATTATCCGGATAGAATAGTGCAAAAGCATGCTTTTTACCGAAAAATCCCGTTTCAATATCACGTATTTTTAAACCATCCAATAAAAGGACATAACGTTTTTCTTTCTCTTCATCGTCTTTGTACCAGGTCAATGATTCAGTATTTAATACAAACCAAAAA] [+] EMBL CD198624 [ATTGATCATAACCAATAAGAATAATTAATGAAGTATACAACAATATTTGTTATTATGCATTAAAACAACTTGGTTGGTTGTTAACAACAGAAAATGTAATATTGATTTTGAGAATAAATAATTGCATGAATTGATTCTGATAAAATTGTTTGAGTAATGAAATTTATTAACGGTATCTATAGGTATTATCAACGACGCGCAGGAATGGATGGTGGTACTAGTGGAAAACTTGTCATAGAGTTAATTATTCCAGGAGAATTGGAATCTTTCACGACCGGGAACATGTCAGCTGGATATAACCGTTGCGGAATCAATGGGGAAGGCAGTTGTCCAGAACTTGTTTTAGCAGGAACTGATGGTACTTGTCTGGGAGCAGAACCTTTGATTGAACCCGTA CTATTTGTA ] [+] EMBL BG931818 [ ttcCTAGTGGAAAACTTGTCATAGAGTTAATTATTCCAGGAGAATTGGAATCTTTCACGACCGGGAACATGTCAGCTGGATATAACCGTTGCGGAATCAATGGGGAAGGCAGTTGTCCAGAACTTGTTTTAGCAGGAACTGATGGTACTTGTCTGGGAGCAGAACCTTTGATTGAACCCGTA CTATTTGTAGAACTCCATCCACCAGGAGGAGGTGGTGCTGGTGGACGACGATTGGCTGTTGGACTAGGAGGAGGAAGTGTACCTGTAGATCCAGGAGCAGTCAAACCACCAGG AATATCACTCAGTAACCAGTCGTCATTGACTGGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCctaga ] [-] EMBL CD164174 [ GTGGAAAACTTGTCATAGAGTTAATTATTCCAGGAGAATTGGAATCTTTCACGACCGGGAACATGTCAGCTGGATATAACCGTTGCGGAATCAATGGGGAAGGCAGTTGTCCAGAACTTGTTTTAGCAGGAACTGATGGTACTTGTCTGGGAGCAGAACCTTTGATTGAACCCGTATCTATTTGTAGAACTCCATCCACCAGGAGAAGGTGGTGCTGGTGGACGACGATTGGCTGTTGGTCTAGGAGGAGGAAGTG ] [+] EMBL CD188552 [ CTTTGATTGAACCCGTA CTATTTGTAGAACTCCATCCACCAGGAGGAGGTGGTGCTGGTGGACGACGATTGGCTGTTGGACTAGGAGGAGGAAGTGTACCTGTAGATCCAGGAGCAGTCAAACCACCAGG AATATCACTCAGTAACCAGTCGTCATTGACTGGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCACTTATAATATTCAATGCTTCTTTCATAGCATCATAAACACGGACCATTTCATCGCGTTTTTGTTGAACCCCCAATGATTCAGACATTAATGAATTCAGGTCACCAGCCTGATATAAATTTGGTAATAGTTCACCTTTTAAGAAGGATTTAATCTCATTAACAAGCATATGCATTAACAATTTTGGCACCAAATCTAACTGCGTTTTAATCACAATTTTCATGTATGAATCGACT ] [+] EMBL CD167874 [ GTACCTGTAGATCCAGGAGCAGTCAAACCACCAGGAAATATCACTCAGTAACCAGTCGTCATTGACTGGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCACTTATAATATTCAATGCTTCTTTCATAGCATCATAAACACGGACCATTTCATCGCGTTTTTGTTGAACCCCCAATGATTCAGACATTAATGAATTCAGGTCACCAGCCTGATATAAATTTGGTAATAGTTCACCTTTTAAGAAGGATTTAATCTCATTAACAAGCATATGCATTAACAATTTTGGCACCAAATCTAACTGCGTTTTAATCACAATTTTCATGTATGAATCGACTAGATTTCGTATGATTTCTACTTGACG TTCAAGCTGAGGCTCACTGGCTTCAAGTGATGAACTGTCAGATTGCTCTGTTTTTTCCGATTTAGTTTTAGCTGGATAAACACCAGCACGCAAAAACGATGCCTTCCATGAATCAACTAATTCAGCTGATTCAGCACACAACTCCAATTGTTTATAGTCTTTGTAGACATT ] [-] EMBL CD166787 [ TTATAATATTCAATGCTTCTTTCATAGCATCATAAACACGGACCATTTCATCGCGTTTTTGTTGAACCCCCAATGATTCAGACATTAATGAATTCAGGTCACCAGCCTGATATAAATTTGGTAATAGTTCACCTTTTAAGAAGGATTTAATCTCATTAACAAGCATATGCATTAACAATTTTGGCACCAAATCTAACTGCGTTTTAATCACAATTTTCATGTATGAATCGACTAGATTTCGTATGATTTCTACTTGACG TTCAAGCTGAGGCTCACTGGCTTCAAGTGATGAACTGTCAGATTGCTCTG TTTTTCCGATTTAGTTTTAGCTGGATAAACACCAGCACGCAAAAACGATGCCTTCCAT ] [-] EMBL CD141376 [ TGTATGAATCGACTAGATTTCGTATGATTTCTAC TGACGTTTCAAGCTGAGGCTCACTGCTTTCAAGTGATGAACTGTCAGATTGTTCTGTTTTTTCCGATTTAGTTTTAGCTGGATAAACACCAGCACGCAAAAACGATGCCTTCCATGAATCAACTAATTCAGCTGATTCAGCACACAACTCCAATTGTTTATAGTCTTTGTAGACATTATGATTATCCGGATAGAATAGTGCAAAAGCATGCTTTTTACCGAAAAATCCCGTTTCAATATCACGTATTTTTAAACCATCCAATAAAAGGACATAACGTTTTTCTTTCTCTTCATCGTCTTTGTACCAGGTCAATGATTCAGTATTTAATACAAACCAAAAA] consensusID : consensus_9768#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 553 fasta sequence [TGTACCTGTAGATCCAGGAGCAGTCAAACCACCAGGAATATCACTCAGTAACCAGTCGTCATTGACTGGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCACTTATAATATTCAATGCTTCTTTCATAGCATCATAAACACGGACCATTTCATCGCGTTTTTG-TTGAACCCGTACTATTTGTAGAACTCCATCCACCAGGAGGAGGTGGTGCTGGTGGACGACGATTGGCTGTTGGACTAGGAGGAGGAAGTGTACCTGTAGATCCAGGAGCAGTCAAACCACCAGGAATATCACTCAGTAACCAGTCGTCATTGACTGGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCACTTATAATATTCAATGCTTCTTTCATAGCATCATAAACACGGACCATTTCATCGCGTTTTTGTTGAACCCCCAATGATTCAGACATTAATGAATTCAGGTCACCAGCCTGATATAAATTTGGTAATAGTTCACCTTTTAAGAAGGATTTAATTGCGGAATCAATGGGGAAGGCAGTTGTCCAGAA] [+] EMBL CD200972 [TGTACCTGTAGATCCAGGAGCAGTCAAACCACCAGGAATATCACTCAGTAACCAGTCGTCATTGACTGGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCACTTATAATATTCAATGCTTCTTTCATAGCATCATAAACACGGACCATTTCATCGCGTTTTTG TTGAACCCGTACTATTTGTAGAACTCCATCCACCAGGAGGAGGTGGTGCTGGTGGACGACGATTGGCTGTTGGACTAGGAGGAGGAAGTGTACCTGTAGATCCAGGAGCAGTCAAACCACCAGGAATATCACTCAGTAACCAGTCGTCATTGACTGGAGGTGGAATTGGTGTTGATACAGTGGAC ] [+] EMBL CD183679 [ cTTTGATTGAACCCGTACTATTTGTAGAACTCCATCCACCAGGAGGAGGTGGTGCTGGTGGACGACGATTGGCTGTTGGACTAGGAGGAGGAAGTGTACCTGTAGATCCAGGAGCAGTCAAACCACCAGGAATATCACTCAGTAACCAGTCGTCATTGACTGGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCACTTATAATATTCAATGCTTCTTTCATAGCATCATAAACACGGACCATTTCATCGCGTTTTTGTTGAACCCCCAATGATTCAGACATTAATGAATTCAGGTCACCAGCCTGATATAAATTTGGTAATAGTTCACCTTTTAAGAAGGATTTAATTGCGGAATCAATGGGGAAGGCAGTTGTCCAGAA] [-] EMBL CD194593 [ TGAACCCGTACTATTTGTAGAACTCCATCCACCAGGAGGAGGTGGTGCTGGTGGACGACGATTGGCTGTTGGACTAGGAGGAGGAAGTGTACCTGTAGATCCAGGAGCAGTCAAACCACCAGGAATATCACTCAGTAACCAGTCGTCATTGACTGGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCACTTATAATATTCAATGCTTCTTTCATAGCAT ] consensusID : consensus_9768#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 137 fasta sequence [CTGAATTAGTTGATTCATGGAAGGCATCGTTTTTGCGTGCTGGTGTTTATCCAGNTAAAACTAAATCGGNAAAAACAGANGTATGTCATANAANCAGNATTATCCTACTGATGNCTTTTCCGTGGNTANNNANGTGN] [+] EMBL SM688 [CTGAATTAGTTGATTCATGGAAGGCATCGTTTTTGCGTGCTGGTGTTTATCCAGNTAAAACTAAATCGGNAAAAACAGANGTATGTCATANAANCAGNATTATCCTACTGATGNCTTTTCCGTGGNTANNNANGTGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9768#0 ATTGATCATAACCAATAAGAATAATTAATGAAGTATACAACAATATTTGTTATTATGCAT 60 consensus_9768#1 ------------------------------------------------------------ consensus_9768#2 ------------------------------------------------------------ consensus_9768#0 TAAAACAACTTGGTTGGTTGTTAACAACAGAAAATGTAATATTGATTTTGAGAATAAATA 120 consensus_9768#1 ------------------------------------------------------------ consensus_9768#2 ------------------------------------------------------------ consensus_9768#0 ATTGCATGAATTGATTCTGATAAAATTGTTTGAGTAATGAAATTTATTAACGGTATCTAT 180 consensus_9768#1 ---------------------------------------------------TGTACCTGT 9 consensus_9768#2 ------------------------------------------------------------ consensus_9768#0 AGGTATTATCAACGACGCGCAGGAATGGATGGTGGTACTAGTGGAAAACTTGTCATAGAG 240 consensus_9768#1 AGAT----CCAGGAGCAGTCA--AACCACCAGGAATATCACTCAGTAACCAGTCGTCA-- 61 consensus_9768#2 ------------------------------------------------------------ consensus_9768#0 TTAATTATTCCAGGAGAATTGGAATCTTTCACGACCGGGAACATGTCAGCTGGATATAAC 300 consensus_9768#1 TTGACTG--------GAGGTGGAATTGGTGTTGATACAG-----------TGGACATAGA 102 consensus_9768#2 ------------------------------------------------------------ consensus_9768#0 CGTTGCGGAATCAATGGGGAAGGCAGTTGTCCAGAACTTGTTTTAGCAGGAACTGATGGT 360 consensus_9768#1 CACTTCACTTATAATATTCAATGCT-TCTTTCATAGCAT-CATAAACACGGACC------ 154 consensus_9768#2 ------------------------------------------------------------ consensus_9768#0 ACTTGTCTGGGAGCAGAACCTTTGATTGAACCCGTACTATTTGTAGAACTCCATCCACCA 420 consensus_9768#1 ATTTCATCGCG--------TTTTTGTTGAACCCGTACTATTTGTAGAACTCCATCCACCA 206 consensus_9768#2 ------------------------------------------------------------ consensus_9768#0 GGAGGAGGTGGTGCTGGTGGACGACGATTGGCTGTTGGACTAGGAGGAGGAAGTGTACCT 480 consensus_9768#1 GGAGGAGGTGGTGCTGGTGGACGACGATTGGCTGTTGGACTAGGAGGAGGAAGTGTACCT 266 consensus_9768#2 ------------------------------------------------------------ consensus_9768#0 GTAGATCCAGGAGCAGTCAAACCACCAGGAATATCACTCAGTAACCAGTCGTCATTGACT 540 consensus_9768#1 GTAGATCCAGGAGCAGTCAAACCACCAGGAATATCACTCAGTAACCAGTCGTCATTGACT 326 consensus_9768#2 ------------------------------------------------------------ consensus_9768#0 GGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCACTTATAATATTCAATGCT 600 consensus_9768#1 GGAGGTGGAATTGGTGTTGATACAGTGGACATAGACACTTCACTTATAATATTCAATGCT 386 consensus_9768#2 ----------------------------------------------------------CT 2 ** consensus_9768#0 TCTTTCATAGCATCATAAACACGGACCATTTCATCGCGTTTTTGTTGAACCCCCAATGAT 660 consensus_9768#1 TCTTTCATAGCATCATAAACACGGACCATTTCATCGCGTTTTTGTTGAACCCCCAATGAT 446 consensus_9768#2 GAATTAGTTGATTCATGGA-AGGCATCGTTTTTGCGTGCTGGTGTTTATCCAGNTAAAAC 61 ** * * **** * * * * * *** ** * * **** * ** * * consensus_9768#0 TCA---GACATTAATGAATTCAGGTCACCAGCCTGATATAAATTTGGTAATAGTTCACCT 717 consensus_9768#1 TCA---GACATTAATGAATTCAGGTCACCAGCCTGATATAAATTTGGTAATAGTTCACCT 503 consensus_9768#2 TAAATCGGNAAAAACAGANGTATGTCATANAANCAGNATTATCCTACTGATGNCTTTTCC 121 * * * * ** * * **** ** * * * ** * * consensus_9768#0 TTTAAGAAGGATTTAATCTCATTAACAAGCATATGCATTAACAATTTTGGCACCAAATCT 777 consensus_9768#1 TTTAAGAAGGATTTAATTGCGG-AATCAATGGGGAAGGCAGTTGTCCAGAA--------- 553 consensus_9768#2 GTGGNTANNNANGTGN-------------------------------------------- 137 * * * * consensus_9768#0 AACTGCGTTTTAATCACAATTTTCATGTATGAATCGACTAGATTTCGTATGATTTCTACT 837 consensus_9768#1 ------------------------------------------------------------ consensus_9768#2 ------------------------------------------------------------ consensus_9768#0 TGACGTTCAAGCTGAGGCTCACTGGCTTCAAGTGATGAACTGTCAGATTGCTCTGTTTTT 897 consensus_9768#1 ------------------------------------------------------------ consensus_9768#2 ------------------------------------------------------------ consensus_9768#0 TCCGATTTAGTTTTAGCTGGATAAACACCAGCACGCAAAAACGATGCCTTCCATGAATCA 957 consensus_9768#1 ------------------------------------------------------------ consensus_9768#2 ------------------------------------------------------------ consensus_9768#0 ACTAATTCAGCTGATTCAGCACACAACTCCAATTGTTTATAGTCTTTGTAGACATTATGA 1017 consensus_9768#1 ------------------------------------------------------------ consensus_9768#2 ------------------------------------------------------------ consensus_9768#0 TTATCCGGATAGAATAGTGCAAAAGCATGCTTTTTACCGAAAAATCCCGTTTCAATATCA 1077 consensus_9768#1 ------------------------------------------------------------ consensus_9768#2 ------------------------------------------------------------ consensus_9768#0 CGTATTTTTAAACCATCCAATAAAAGGACATAACGTTTTTCTTTCTCTTCATCGTCTTTG 1137 consensus_9768#1 ------------------------------------------------------------ consensus_9768#2 ------------------------------------------------------------ consensus_9768#0 TACCAGGTCAATGATTCAGTATTTAATACAAACCAAAAA 1176 consensus_9768#1 --------------------------------------- consensus_9768#2 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||