These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 857 fasta sequence [TTTATTATTAATTTAATTAGTTGATAAATCATTTCATATTAGTTCCAAAATGACTGAACAAGAAATTTTACATGCATTTTCATTAATTGATACTGATAATGATGGAGTCATTACAATTGAAGATCTTGAAAGATATTCTAAGAAAAGTACAGTAGCAGATGATTTTGTAATAAAGTGGAAAAGGTTATTTGATGAAGACAATACTGGCGAAATAACATTTATTCATTTTTGTGATGTTCTTGGTGTCAGCAAAAAGAAAAGAGACGAAATTCTTAAAGAAAGAAACATAGTAATTCCAGATTCACTACCTAAACCAATCGTCTACTCAAGCAACCTAAGTCCAGAGATGCAGCAGAAAATATTGAGACTTATAAAGTATGGATGGAATAAACAAAATGATTCTTCCAATTTATATGAAATAACTATACGATGTGATCGTGAGTTCGGTCCACGTTGGAGAGGACGCGTTATATACAATACACAGCCAATAAAAGAAGCAGCTAAAGGAAAATATCTGGTGTTCAGTTGTGATAATGGACAAACTATATTGTGCCTTTGGTTAGCAAATGACGACGAAGACAGACCTGCAGGATGTTGTTGCTGTTAGTTAGTTACAATTTTAAAAATACTCCATTCTGGTTCTATTTAATTACTTTAAACTATTGTTGTAATGCAAGATAATTTTGTGTCAACTTTAACTCTTACGCAATAAAAAGTTGCATTCACAGATAATAATGCCATTCTATTAACATCATGGACTTAAAAATCATGTTATAAATCATTTTCTTCTAGTTTAAATAAACTGTGTGTCATTTTGTTATCTTTAAAAATTATATTGATCATAATAATAAACTATT] [+] EMBL CD078945 [TTTATTATTAATTTAATTAGTTGATAAATCATTTCATATTAGTTCCAAAATGACTGAACAAGAAATTTTACATGCATTTTCATTAATTGATACTGATAATGATGGAGTCATTACAATTGAAGATCTTGAAAGATATTCTAAGAAAAGTACAGTAGCAGATGATTTTGTAATAAAGTGGAAAAGGTTATTTGATGAAGACAATACTGGCGAAATAACATTTATTCATTTTTGTGATGTTCTTGGTGTCAGCAAAAAGAAAAGAGACGAAATTCTTAAAGAAAGAAACATAGTAATTCCAGATTCACTACCTAAACCAATCGTCTACTCAAGCAACCTAAGTCCAGAGATGCAGCAGAAAATATTGAGACTTATAAAGTATGGATGGAATAAACAAAATGATTCTTCCAATTTATATGAAATAACTATACGATGTGATCGTGAGTTCGGTCCACGTTGGAGAGGACGCGTTATATACAATACACAGCCAATAAAAGAAGCAGCTAAAGGAAAATATCTGGTGTTCAGTTGTGATAATGGACAAACTATATTGTGCCTTTGGTTAGCANATGACGACGAAGACAGACCTGCAGGATGTTGNTGCT ] [+] EMBL CD077678 [ gagGACTGAACAAGAAATTTTACATGCATTTTCATTAATTGATACTGATAATGATGGAGTCATTACAATTGAAGATCTTGAAAGATATTCTAAGAAAAGTACAGTAGCAGATGATTTTGTAATAAAGTGGAAAAGGTTATTTGATGAAGACAATACTGGCGAAATAACATTTATTCATTTTTGTGATGTTCTTGGTGTCAGCAAAAAGAAAAGAGACGAAATTCTTAAAGAAAGAAACATAGTAATTTCAGAT ] [+] EMBL CD077600 [ ggTTACATGCATTTTCATTAATTGATACTGATAATGATGGAGTCATTACAATTGAAGATCTTGAAAGATATTCTAAGAAAAGTACAGTAGCAGATGATTTTGTAATAAAGTGGAAAAGGTTATTTGATGAAGACAATACTGGCGAAATAACATTTATTCATTTTTGTGATGTTCTTGGNGTCAGCAAAAAGAAAAGAGACGAAATTCTTAAAGAAAGAGACATAGTAATTCCAGATTCACTACCTAAACCAATCG ] [-] EMBL CD186868 [ TTTGATGAAGACAATACTGGCGAAATAACATTTATTCATTTTTGTGATGTTCTTGGTGTCAGCAAAAAGAAAAGAGACGAAATTCTTAAAGAAAGAAACATAGTAATTCCAGATTCACTACCTAAACCAATCGTCTACTCAAGCAACCTAAGTCCAGAGATGCAGCAGAAAATATTGAGACTTATAAAGTATGGATGGAATAAACAAAATGATTCTTCCAATTTATATGAAATAACTATACGATGTGATCGTGAGTTCGGTCCACGTTGGAGAGGACGCGTTATATACAATACACAGCCAATAAAAGAAGCAGGTAAAGGAAAATATCTGGTGTTCAGTTGTGATAATGGACAAACTATATTGTGCCTTTGGTTAGCAAATGACGACGAAG ] [-] EMBL BG931758 [ TCAGCAAAAAGAAAAGAGACGAAATTCTTAAAGAAAGAAACATAGTAATTCCAGATTCACTACCTAAACCAATCGTCTACTCAAGCAACCTAAGTCCAGAGATGCAGCAGAAAATATTGAGACTTATAAAGTATGGATGGAATAAACAAAATGATTCTTCCAATTTATACGAAATAACTATACGATGTGATCGTGAGTTCGGTCCACGTTGGAGAc ] [+] EMBL BG931755 [ AGCAAAAAGAAAAGAGACGAAATTCTTAAAGAAAGAGACATAGTAATTCCAGATTCACTACCTAAACCAATCGTCTACTCAAGCAACCTAAGTCCAGAGACGCAGCAGAAAATATTGAGACTTATAAAGTATGGATGGAATAAACAAAATGATTCTTCCAATTTATATGAAATAACTATACGATGTGATCGTGAGTTCGGTCCACGTTGGA ] [-] EMBL CD073399 [ AGCAACCTAAGTCCAGAGATGCAGCAGAAAATATTGAGACTTATAAAGTATGGATGGAATAAACAAAATGATTCTTCCAATTTATATGAAATAACTATACGATGTGATCGTGAGTTCGGTCCACGTTGGAGAGGACGCGTTATATACAATACACAGCCAATAAAAGAAGCAGCTAAAGGAAAATATCTGGTGTTCAGTTGTGATAATGGACAAACTATATTGTGCCTTTGGTTAGCAAATGACGACGAAGACAGACCTGCAGGATGTTGTTGCTGTTAGTTAGTTACAATTTTAAAAATACTCCATTCTGGTTCTATTTAATTACTTTAAACTATTGTTGTAATGCAAGATAATTTTGTGTCAACTTTAACTCTTACGCAATAAAAAGTTGCATTCACAGATAATAATGCCATTCTATTAACATCATGGACTTAAAAATCATGTTATAAATCATTTTCTTCTAGTTTAAATAAACTGTGTGTCATTTTGTTATCTTTAAAAATTATATTGATCATAATAATAAACTATT] [-] EMBL CD077161 [ CTATATTGTGCCTTTGGTTAGCAAATGACGACGAAGACAGACCTGCAGGATGTTGTTGCTGTTAGTTAGTTACAATTTTAAAAATACTCCATTCTGGTTCTATTTAATTACTTTAAACTATTGTTGTAATGCAAGATAATTTTGTGTCAACTTTAACTCTTACGCAATAAAAAGTTGCATTCACAGATAATAATGCCATTCTATTAACATCATGGACTTAAAAATCATGTTATAAATCATTTTCTTCTAGTTTAAATAAACTGTGTGTCATTTTGTTATCTTTAAAAATTATATTGATCATAATAATAAACTATT] consensusID : consensus_9771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 594 fasta sequence [CGAAATAACATTTATTCATTTTTGTGATGTTCTTGGTGTCAGCAAAAAGAAAAGAGAAATAAACAGCGAAATTCTTAAAGAAAGAAACATAGTAATTCCAGATTCACTACCTAAACCAATCGTCTACTCAAGCAACCTAAGTCCAGAGATGCAGCAGAAAATATTGAGACTTATAAAGTATGGATGGAATAAACAAAATGATTCTTCCAATTTATATGAAATAACTATACGATGTGATCGTGAGTTCGGTCCACGTTGGAGAGGACGCGTTATATACAATACACAGCCAATAAAAGAAGCAGCCAAAGGCACAATATAGACCTGCAGGATGTTGTTGCTGTTAGTTAGTTACAATTTTAAAAATACTCCATTCTGGTTCTATTTAATTACTTTAAACTATTGTTGTAATGCAAGATAATTTTGTGTCAACTTTAACTCTTACGCAATAAAAAGTTGCATTCACAGATAATAATGCCATTCTATTAACATCATGGACTTAAAAATCATGTTATAAATCATTNTCTTCTAGTTTAAATAAACTGTGTGTCATTCTGTTATCTTTAAAAATTATATTGATCATAATAATAAACTATT] [+] EMBL CD078520 [CGAAATAACATTTATTCATTTTTGTGATGTTCTTGGTGTCAGCAAAAAGAAAAGAGAAATAAACAGCGAAATTCTTAAAGAAAGAAACATAGTAATTCCAGATTCACTACCTAAACCAATCGTCTACTCAAGCAACCTAAGTCCAGAGATGCAGCAGAAAATATTGAGACTTATAAAGTATGGATGGAATAAACAAAATGATTCTTCCAATTTATATGAAATAACTATACGATGTGATCGTGAGTTCGGTCCACGTTGGAGAGGACGCGTTATATACAATACACAGCCAATAAAAGAAGCAGCCAAAGGCACAATATAGACCTGCAGGATGTTGTTGCTGTTAGTTAGTTACAATTTTAAAAATACTCCATTCTGGTTCTATTTAATTACTTTAAACTATTGTTGTAATGCAAGATAATTTTGTGTCAACTTTAACTCTTACGCAATAAAAAGTTGCATTCACAGATAATAATGCCATTCTATTAACATCATGGACTTAAAAATCATGTTATAAATCATTNTCTTCTAGTTTAAATAAACTGTGTGTCATTCTGTTATCTTTAAAAATTATATTGATCATAATAATAAACTAT ] [-] EMBL CD072989 [ GTGATGTTCTTGGTGTCAGCAAAAAGAAAAGAGAAATAACCAGCGAAATTCTTAAAGAAAGAAACATAGTAATTCCAGATTCACTACCTAAACCAATCGTCTACTCAAGCAACCTAAGTCCAGAGATGCAGCAGAAAATATTGAGACTTATAAAGTATGGATGGAATAAACAAAATGATTCTTCCAATTTATATGAAATAACTATACGATGTGATCGTGAGTTCGGTCCACGTTGGAGAGGACGCGTTATATACAATACACAGCCAATAAAAGAAGCAGCCAAAGGCACAATATAGACCTGCAGGATGTTGTTGCTGTTAGTTAGTTACAATTTTAAAAATACTCCATTCTGGTTCTATTTAATTACTTTAAACTATTGTTGTAATGCAAGATAATTTTGTGTCAACTTTAACTCTTACGCAATAAAAAGTTGCATTCACAGATAATAATGCCATTCTATTAACATCATGGACTTAAAAATCATGTTATAAATCATTTTCTTCTAGTTTAAATAAACTGTGTGTCATTTTGTTATCTTTAAAAATTATATTGATCATAATAATAAACTATT] [+] EMBL CD079867 [ AGACTTATAAAGTCTGGATGGAATAAACAAAATGATTCTTCCAATTTATATGAAATAACTATACGATGTGATCGTGAGTTCGGTCCACGTTGGACAGGACGCGTTATATACAATACACAGCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9771#0 TTTATTATTAATTTAATTAGTTGATAAATCATTTCATATTAGTTCCAAAATGACTGAACA 60 consensus_9771#1 ------------------------------------------------------------ consensus_9771#0 AGAAATTTTACATGCATTTTCATTAATTGATACTGATAATGATGGAGTCATTACAATTGA 120 consensus_9771#1 ------------------------------------------------------------ consensus_9771#0 AGATCTTGAAAGATATTCTAAGAAAAGTACAGTAGCAGATGATTTTGTAATAAAGTGGAA 180 consensus_9771#1 ------------------------------------------------------------ consensus_9771#0 AAGGTTATTTGATGAAGACAATACTGGCGAAATAACATTTATTCATTTTTGTGATGTTCT 240 consensus_9771#1 ---------------------------CGAAATAACATTTATTCATTTTTGTGATGTTCT 33 ********************************* consensus_9771#0 TGGTGTCAGCAAAAAGAAAAGAGA---------CGAAATTCTTAAAGAAAGAAACATAGT 291 consensus_9771#1 TGGTGTCAGCAAAAAGAAAAGAGAAATAAACAGCGAAATTCTTAAAGAAAGAAACATAGT 93 ************************ *************************** consensus_9771#0 AATTCCAGATTCACTACCTAAACCAATCGTCTACTCAAGCAACCTAAGTCCAGAGATGCA 351 consensus_9771#1 AATTCCAGATTCACTACCTAAACCAATCGTCTACTCAAGCAACCTAAGTCCAGAGATGCA 153 ************************************************************ consensus_9771#0 GCAGAAAATATTGAGACTTATAAAGTATGGATGGAATAAACAAAATGATTCTTCCAATTT 411 consensus_9771#1 GCAGAAAATATTGAGACTTATAAAGTATGGATGGAATAAACAAAATGATTCTTCCAATTT 213 ************************************************************ consensus_9771#0 ATATGAAATAACTATACGATGTGATCGTGAGTTCGGTCCACGTTGGAGAGGACGCGTTAT 471 consensus_9771#1 ATATGAAATAACTATACGATGTGATCGTGAGTTCGGTCCACGTTGGAGAGGACGCGTTAT 273 ************************************************************ consensus_9771#0 ATACAATACACAGCCAATAAAAGAAGCAGCTAAAGGAAAATATCTGGTGTTCAGTTGTGA 531 consensus_9771#1 ATACAATACACAGCCAATAAAAGAAGCAGCCAAAGGCACA-------------------- 313 ****************************** ***** * * consensus_9771#0 TAATGGACAAACTATATTGTGCCTTTGGTTAGCAAATGACGACGAAGACAGACCTGCAGG 591 consensus_9771#1 ---------------------------------------------ATATAGACCTGCAGG 328 * * *********** consensus_9771#0 ATGTTGTTGCTGTTAGTTAGTTACAATTTTAAAAATACTCCATTCTGGTTCTATTTAATT 651 consensus_9771#1 ATGTTGTTGCTGTTAGTTAGTTACAATTTTAAAAATACTCCATTCTGGTTCTATTTAATT 388 ************************************************************ consensus_9771#0 ACTTTAAACTATTGTTGTAATGCAAGATAATTTTGTGTCAACTTTAACTCTTACGCAATA 711 consensus_9771#1 ACTTTAAACTATTGTTGTAATGCAAGATAATTTTGTGTCAACTTTAACTCTTACGCAATA 448 ************************************************************ consensus_9771#0 AAAAGTTGCATTCACAGATAATAATGCCATTCTATTAACATCATGGACTTAAAAATCATG 771 consensus_9771#1 AAAAGTTGCATTCACAGATAATAATGCCATTCTATTAACATCATGGACTTAAAAATCATG 508 ************************************************************ consensus_9771#0 TTATAAATCATTTTCTTCTAGTTTAAATAAACTGTGTGTCATTTTGTTATCTTTAAAAAT 831 consensus_9771#1 TTATAAATCATTNTCTTCTAGTTTAAATAAACTGTGTGTCATTCTGTTATCTTTAAAAAT 568 ************ ****************************** **************** consensus_9771#0 TATATTGATCATAATAATAAACTATT 857 consensus_9771#1 TATATTGATCATAATAATAAACTATT 594 ************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||