These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9774#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1045 fasta sequence [GTTCCACGAACCGGAGGTCACAGTGGAAACAAACTGGTTGTCATGTCGATGATTTCTCGCCAAATTATTGCTCGTAGTTCTGCTACACTTGATGGTGCAACGCTTAAAATACATCGTGCCCATTGTAGTTATTTATATCTCTTGTCACCGATGAGGTCTGTTACACTAGATAAGTGTCGCAAGCTGACCATTGTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGACTGTTTAGTTATTGCAGCCTGTCGTCGTGCTGTTTTAGCTTCTTGTCGTCGGTGCACATTACATTTAGCTATACAATCCCGTCCAATACTGATTCAGCCTCCTGTTCCAAACACTGTCAGTGGATCTATGATTATTTCAAATATTCCTGGGAATAATTCGGGTACAAATACTTCTACCCCAGGCACCCCTACGCCTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCTTTTCATACAACGTATATGAAACTTGTAGATCACCTGAACAAGGTAAACCTTAGTCCAAAAGTTAATTATTGGGATCGTCCATTTTTGTTGGGACAAGATTCCAGTCGTCAAGACTCATCTCAACAATTATCCAGAGTTCGTTGCTGGGACTTACTACAACCCGCCCATTTTTATCCTTTCAATATTCCACTTTTGCTTTCTACTCGAGCTGAAAGTATGGACCACAACCCGGTCGGTGAAAATTATACTCGTTCTGAAGAATCTGTTCCTAATGGT-AATCCTC-AACGGCTAACTGTCTAGATTTGAGTGCATCACTTATAACGAATACGTCCAGATACTTTGGCGACTCAGATNAAAGACGTTTAGAGAACTATATTTCCATGGCTAATAATATTTTACCAATTCCATTGCCTTCTGCTTATTTAATTGCTTTACATGAAAGGGCTGGAGCTTATCATAAGTGGCCTCAACATGTTATGAATGCAAGGTTGACCCTTGATCAATGTCATAGTTTTGGCACTGTTGTGGATCAGAGATTTCGACAATGGTTGATAGAATCAGGCAA] [-] EMBL CD130315 [GTTCCACGAACCGGAGGTCACAGTGGAAACAAACTGGTTGTCATGTCGATGATTTCTCGCCAAATTATTGCTCGTAGTTCTGCTACACTTGATGGTGCAACGCTTAAAATACATCGTGCCCATTGTAGTTATTTATATCTCTTGTCACCGATGAGGTCTGTTACACTAGATAAGTGTCGCAAGCTGACCATTGTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGACTGTTTAGTTATTGCAGCCTGTCGTCGTGCTGTTTTAGCTTCTTGTCGTCGGTGC ] [+] EMBL CD093332 [ AAGCTGACCATTGTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGACTGTTTAGTTATTGCAGCCTGTCGTCGTGCTGTTTTAGCTTCTTGTCGTCGGTGCACATTACATTTAGCTATACAATCCCGTCCAATACTGATTCAGCCTCCTGTTCCAAACACTGTCAGTGGATCTATGATTATTTCAAATATTCCTGGGAATAATTCGGGTACAAATACTTCTACCCCAGGCACCCCTACGCCTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCTTTTCATACAACGTATATGAAACTTGTAGATCACCTGAACAAGGTAAACCTTAGTCCAAAAGTTAATTATTGGGATCGTCCATTTTTGTTGGGACAAGATTCCAGTCGTCAAGACTCATCTCAACAATTATCCAGAGTTCGTTGCTGGGACTTACTACAA ] [+] EMBL CD122891 [ CTTGTCGTCGGTGCACATTACATTTAGCTATACAATCCCGTCCAATACTGATTCAGCCTCCTGTTCCAAACACTATCAGTGGATCTATGATTATTTCAAATATTCCTGGGAATAATTCGGGTACAAATACTTCTACCCCAGGCACCCCTACGCCTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCTTTTCATACAACGTATATGAAACTTGTAGATCACCTGAACAAGGTAAACCTTAGTCCAAATGTTAATTATTGGGATCGTCCATTTTTGTTGGGACAAGATTCCAGTCGTCAAGACTCATCTCAACAATTATCCAGAGTTCGTTGCTGGGACTTACTACAACCCGCCCATTTTTATCCTTTCAATATTCCACTTTTGCTTTCTACTCGAGCTGAAA ] [-] EMBL CD187804 [ CTTTTACCTCAGGCACCCTTACGCGTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCTTTTCATACAACGTATATGAAACTTGTAGATCACCTGAACAAGGTAAACCTTAGTCCAAAAGTTAATTATTGGGATCGTCCATTTTTGTTGGGACAAGATTCCAGTCGTCAAGACTCATCTCAACAATTATCCAGAGTTCGTTGCTGGGACTTACTACAACCCGCCCATTTTTATCCTTTCAATATTCCACTTTTGCTTTCTACTCGAGCTGAAAGTATGGACCACAACCCGGTCGGTGAAAATT TACTCGTTCT AAGAATCTGTTCCTAATGGT AATCCTCAAACGGCTAACTGTCTAGATTTGAGTGCATCAATTATAg ] [-] EMBL CD122947 [ CTTGTAGATCACCTGAACAAGGTAAACCTTAGTCCAAAAGTTAATTATTGGGATCGTCCATTTTTGTTGGGACAAGAT AGTCGTCAAGACTCATCTCAACAATTATCCAGAGTTCGTTGCTGGGACTTACTACAACCCGCCCATTTTTATCCTTTCAATATTCCACTTTTGCTTTCTACTCGAGCTGAAAG ] [+] EMBL CD198256 [ CAAGGGAAACCTTAGCCCAAAAGTTAATTATTGGGATCGTCCATTTTTGTTGGGACAAGATTCCAGTCGTCAAGACTCATCTCAACAATTATCCAGAGTTCGTTGCTGGGACTTACTACAACCCGCCCATTTTTATCCTTTCAATATTCCACTTTTGCTTTCTACTCGAGCTGAAAGTATGGACCACAACCCGGTCGGTGAAAATTATACTCGTTCTGAAGAATCTGTTCCTAATGGTAAATCCTC AACGGCTAACTGTCTAGATTTGAGTGCATCACTTATAACGAATACGTCCAGATACTTTGGCGACTCAGATN ] [+] EMBL CD179708 [ CCTTAGTCCAAAAGTTAATTATTGGGATCGTCCATTTTTGTTGGGACAAGATTCCAGTCGTCAAGACTCATCTCAACAATTATCCAGAGTTCGTTGCTGGGACTTACTACAACCCGCCC ] [+] EMBL CD166366 [ ACATCCCGGTCGGTGAAAATTATACTCGTTCTGAAGAATCTGTTCCTAATGGT AATCCTCAAACGGCTAACTGTCTAGATTTGAGTGCATCACTTATAACGAATACGTCCAGATACTTTGGCGACTCAGATGAAAGACGTTTAGAGAACTATATTTCCATGGCTAATAATATTTTACCAATTCCATTGCCTTCTGCTTATTTAATTGCTTTACATGAAAGGGCTGGAGCTTATCATAAGTGGCCTCAACATGTTATGAATGCAAGGTTGACCCTTGATCAATGTCATAGTTTTGGCACTGTTGTGGATCAGAGATTTCGACAATGGTTGATAGAATCAGGCAA] consensusID : consensus_9774#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 443 fasta sequence [ATATTCGATCACAGGTGTCTTCGAAGCATTGCTCGTATATTCTGTGACCACCGAGTCTGTTACACTAGATAAGTGTCGCAAGCTGACCATTGTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGACTGTTTAGTTATTGCAGCCTGTCGTCGTGCTGTTTTAGCTTCTTGTCGTCGGTGCACATTACATTTAGCTATACAATCCCGTCCAATACTGATTCAGCCTCCTGTTCCAAACACTATCAGTGGATCTATGATTATTTCAAATATTCCTGGGAATAATTCGGGTACAAATACTTCTACCCCAGGCACCCCTACGCCTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCTTTTCATACACGTATATGAAACTTGTAGATCACCTGAACAAGTACCTTAGTCCAAAGTTCCGTGA] [-] EMBL CD065464 [ATATTCGATCACAGGTGTCTTCGAAGCATTGCTCGTATATTCTGTGACCACCGAGTCTGTTACACTAGATAAGTGTCGCAAGCTGACCATTGTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGACTGTTTAGTTATTGCAGCCTGTCGTCGTGCTGTTTTAGCTTCTTGTCGTCGGTGCACATTACATTTAGCTATACAATCCCGTCCAATACTGATTCAGCCTCCTGTTCCAAACACTATCAGTGGATCTATGATTATTTCAAATATTCCTGGGAATAATTCGGGTACAAATACTTCTACCCCAGGCACCCCTACGCCTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCTTTTCATACACGTATATGAAACTTGTAGATCACCTGAACAAGTACCTTAGTCCAAAGTTCCGTGA] [-] EMBL CD090776 [ gcggctTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGACTGTTTAGTTATTGCAGCCTGTCGTCGTGCCGTTTTAGCTTCTTGTCGTCGGTGCACATTACATTTAGCTATACAATCCCGTCCAA ] consensusID : consensus_9774#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence [AAGCTGACCATTGTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGACTGTTTAGTTATTGCAGCCTGTCGTCGTGCTGTTTTAGCTTCTTGTCGTCGGTGCACATTATTTTTTTCTTTACAATCCCGTCCAATCTGATTCACCTCGTACAACATGGTTTNNNNNNNNNNNNNGATTATATATAATATTCCTGGGAATATNTCGGGTACAAATACTTCTACCCCAGGCACCCCTACGCCTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCTTTTCATAC] [+] EMBL CD093306 [AAGCTGACCATTGTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGACTGTTTAGTTATTGCAGCCTGTCGTCGTGCTGTTTTAGCTTCTTGTCGTCGGTGCACATTATTTTTTTCTTTACAATCCCGTCCAATCTGATTCACCTCGTACAACATGGTTTNNNNNNNNNNNNNGATTATATATAATATTCCTGGGAATATNTCGGGTACAAATACTTCTACCCCAGGCACCCCTACGCCTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCTTTTCATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9774#1 ------------------------------------------------------------ consensus_9774#2 ------------------------------------------------------------ consensus_9774#0 GTTCCACGAACCGGAGGTCACAGTGGAAACAAACTGGTTGTCATGTCGATGATTTCTCGC 60 consensus_9774#1 ---------------------------------------ATATTCGATCACAGGTGTCTT 21 consensus_9774#2 ------------------------------------------------------------ consensus_9774#0 CAAATTATTGCTCGTAGTTCTGCTACACTTGATGGTGCAACGCTTAAAATACATCGTGCC 120 consensus_9774#1 CGAAGCA-TTGCTCGTATATTCTGTGACCACCGAG-TCTGTTACACTAGATAAGTGTCGC 79 consensus_9774#2 ------------------------------------------------------------ consensus_9774#0 CATTGTAGTTATTTATATCTCTTGTCACCGATGAGGTCTGTTACACTAGATAAGTGTCGC 180 consensus_9774#1 AAGCTGACCATTGTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGAC 139 consensus_9774#2 AAGCTGACCATTGTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGAC 60 consensus_9774#0 AAGCTGACCATTGTTTTGGGACCGATTGAAAATACTCTTCAACTTAACCATTGTGAAGAC 240 ************************************************************ consensus_9774#1 TGTTTAGTTATTGCAGCCTGTCGTCGTGCTGTTTTAGCTTCTTGTCGTCGGTGCACATTA 199 consensus_9774#2 TGTTTAGTTATTGCAGCCTGTCGTCGTGCTGTTTTAGCTTCTTGTCGTCGGTGCACATTA 120 consensus_9774#0 TGTTTAGTTATTGCAGCCTGTCGTCGTGCTGTTTTAGCTTCTTGTCGTCGGTGCACATTA 300 ************************************************************ consensus_9774#1 CATTTAGCTATACAATCCCGTCCAATACTGATTCAGCCTCCTGTTCCAAACACTATCAGT 259 consensus_9774#2 TTTTTTTCTTTACAATCCCGTCCAAT-CTGATTCA-CCTCGTACAACATG-GTTTNNNNN 177 consensus_9774#0 CATTTAGCTATACAATCCCGTCCAATACTGATTCAGCCTCCTGTTCCAAACACTGTCAGT 360 *** ** **************** ******** **** * ** * consensus_9774#1 GGATCTATGATTATTTCAAATATTCCTGGGAATAATTCGGGTACAAATACTTCTACCCCA 319 consensus_9774#2 NNNNNNNNGATTATATATAATATTCCTGGGAATATNTCGGGTACAAATACTTCTACCCCA 237 consensus_9774#0 GGATCTATGATTATTTCAAATATTCCTGGGAATAATTCGGGTACAAATACTTCTACCCCA 420 ****** * **************** ************************ consensus_9774#1 GGCACCCCTACGCCTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCT 379 consensus_9774#2 GGCACCCCTACGCCTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCT 297 consensus_9774#0 GGCACCCCTACGCCTGGTAGTGTAGCACTGGTTGGTAATGAAGAAATCTTGTTGGCTCCT 480 ************************************************************ consensus_9774#1 TTTCATACA-CGTATATGAAACTTGTAGATCACCTGAACAAGT---ACCTTAGTCCAAAG 435 consensus_9774#2 TTTCATAC---------------------------------------------------- 305 consensus_9774#0 TTTCATACAACGTATATGAAACTTGTAGATCACCTGAACAAGGTAAACCTTAGTCCAAAA 540 ******** consensus_9774#1 TTCCGTGA---------------------------------------------------- 443 consensus_9774#2 ------------------------------------------------------------ consensus_9774#0 GTTAATTATTGGGATCGTCCATTTTTGTTGGGACAAGATTCCAGTCGTCAAGACTCATCT 600 consensus_9774#1 ------------------------------------------------------------ consensus_9774#2 ------------------------------------------------------------ consensus_9774#0 CAACAATTATCCAGAGTTCGTTGCTGGGACTTACTACAACCCGCCCATTTTTATCCTTTC 660 consensus_9774#1 ------------------------------------------------------------ consensus_9774#2 ------------------------------------------------------------ consensus_9774#0 AATATTCCACTTTTGCTTTCTACTCGAGCTGAAAGTATGGACCACAACCCGGTCGGTGAA 720 consensus_9774#1 ------------------------------------------------------------ consensus_9774#2 ------------------------------------------------------------ consensus_9774#0 AATTATACTCGTTCTGAAGAATCTGTTCCTAATGGTAATCCTCAACGGCTAACTGTCTAG 780 consensus_9774#1 ------------------------------------------------------------ consensus_9774#2 ------------------------------------------------------------ consensus_9774#0 ATTTGAGTGCATCACTTATAACGAATACGTCCAGATACTTTGGCGACTCAGATNAAAGAC 840 consensus_9774#1 ------------------------------------------------------------ consensus_9774#2 ------------------------------------------------------------ consensus_9774#0 GTTTAGAGAACTATATTTCCATGGCTAATAATATTTTACCAATTCCATTGCCTTCTGCTT 900 consensus_9774#1 ------------------------------------------------------------ consensus_9774#2 ------------------------------------------------------------ consensus_9774#0 ATTTAATTGCTTTACATGAAAGGGCTGGAGCTTATCATAAGTGGCCTCAACATGTTATGA 960 consensus_9774#1 ------------------------------------------------------------ consensus_9774#2 ------------------------------------------------------------ consensus_9774#0 ATGCAAGGTTGACCCTTGATCAATGTCATAGTTTTGGCACTGTTGTGGATCAGAGATTTC 1020 consensus_9774#1 ------------------------- consensus_9774#2 ------------------------- consensus_9774#0 GACAATGGTTGATAGAATCAGGCAA 1045 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||