These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9775#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1225 fasta sequence [CCAAATACACCGACCGACAAAACAAAAATCAGCTGACTCAGATCAGAGTGCAGATAATACATTGAATGAATCAGTAATCCCGAGCAATTTATCTGCAAATCAGTTGTTACTTCGTCGTTTCAACAATCATTCGATACTTGTTTTGAAATCTCTTAGTTCAAATGACGCATCTTCATCAACTAATAATGTATCTCAAAATCCGAAAGATGTGCTTAACTCCTGTCCGTTAAAAGACCGCGTGTACGTTAAAGAACTGGTAGAAGATCAAAATCCTGCAGAAATCCAGTTAGACCTAACTTGTGTAACTGACTATTTAGAGGGTCCTACCCCTAGTATAGCTGGTAAAGCTACAAAGTTAATGGATCCATTATCAGTTACCCGGCAAACAGATACTTCTTATGGATTACAACTAGAGCAGTCAGTAAAGAGATGTAAGAATATGATGGTAGCTGCTTATCACATG-GGGAAAAAGCCAGGTGTATCACTTTTAACTGCACTTGAATCTCAACAAGCATTGGCAGATGTCTCACCTGGTGGTTGCCTCATCGGTGGGAAACTTAATGAACGTTCGAAACCATGCGACTTAAATAGTGATCAATCATCTTTACGTTTGTTTGAGCCAGGAAGAAACAATCGTATTTCGAACTCTCCGAAAGTGTCTGATGAACACCATGCTAATGACGATGTCAATCGTGGCCCGCCACTACTCACACCAGAACAGGTTAAAGATTTGTCACTTTTATATTCTAGTGCCGCTGAACTCTTAAGACATTTCTGGGCATGTTTCCCTGTAACAACCCCACAGCTAGCTGATAAGTTAGATCGTGTTGCTGCCAGTCTTACTCGTTTTCGTACAACCAAGGTGATCCACTTCGCCGCTGGTGTTGATCCGTCTTTGATGACTAAGTCAGACACATATTCTTCTGATTCATCCGAACATCTACTTAACACAGGAAATTCTGGGCTTATTTCTTACCGTTCAAGTGTGACTAGTCACCTGGAATCGATGATGGACTCCGCTCAAAAGAAGTATTCTGAATGGAAAACTCGGCATTCGCAATAATGTAAATATCTGTACAGATCGAATTTTTCGGGATTTTGCTTCGCGATTTTCTGTCTCCATTC-CTGGTAATTCATTACTCTAAATAATTACTGTTTCGTGGCATTATGCTGAAC-TGTATATATTAACTCTCCGGATGCCATTTGAACAATTCATTGCCAGATT] [+] EMBL CD078544 [CCAAATACCCGGTCCGACAAAACAAAAATCAGCTGACTCAGATCAGAGTGCAGATAATACATTGAATGAATCAGTAATCCCGAGCAATTTATCTGCAAATCAGTTGTTACTTCGTCGTTTCAACAATCATTCGATACTTGTTTTGAAATCTCTTAGTTCAAATGACGCATCTTCATCAACTAATAATGTATCTCAAAATCCGAAAGATGTGCTTAACTCCTGTCCGTTAAAAGACCGCGTGTACGTTAAAGAACTGGTAGAAGATCAAAATCCTGCAGAAATCCAGTTAGACCTAACTTGTGTAACTGACTATTTAGAGGGTCCTACCCCTAGTATAGCTGGTAAAGCTACAAAGTTAATGGATCCATTATCAGTTACCCGGCAAACAGATACTTCTTATGGATTACAACTAGAGCAGTCAGTAAAGAGATGTAAGAATATGATGGTAGCTGCTTATCACATG GGGAAAAAGCCAGGTGTATCACTTTTAACTGCACTTGAATCTCAACAAGCATTGGCAGATGTCTCACCTGGTGGTTGCCTCATCGGTGGGAAACTTAATGAACGTTCGAAACCATGCGACTTANATAGTGATCAATCATCTTTACGTT ] [+] EMBL CD192440 [ ACCGACCGACAAAACAAAAATCAGCTGACTCAGATCAGAGTGCAGATAATACATTGAATGAATCAGTAATCCCGAGCAATTTATCTGCAAATCAGTTGTTACTTCGTCGTTTCAACAATCATTCGATACTTGTTTTGAAATCTCTTAGTTCAAATGACGCATCTTCATCAACTAATAATGTATCTCA ] [+] EMBL CD192321 [ ACCGACCGACAAAACAAAAATCAGCTGACTCAGATCAGAGTGCAGATAATACATTGAATGAATCAGTAATCCCGAGCAATTTATCTGCAAATCAGTTGTTACTTCGTCGTTTCAACAATCATTCGATACTTGTTTTGAAATCTCTTAGTTCAAATGACGCATCTTCATCAACTAATAATGTATCTCA ] [+] EMBL CD192428 [ ACCGACCGACAAAACAAAAATCAGCTGACTCAGATCAGAGTGCAGATAATACATTGAATGAATCAGTAATCCCGAGCAATTTATCTGCAAATCAGTTGTTACTTCGTCGTTTCAACAATCATTCGATACTTGTTTTGAAATCTCTTAGTTCAAATGACGCATCTTCATCAACTAATAATGTATCTCA ] [+] EMBL CD078888 [ GTTTCAACAATCATTCGATACTTGATTTGAAATCTCTTAGTTCAAATGACGCATCTTCATCAACTAATAATGTATCTCAAAATCCGAAAGATGTGCTTAACTCCTGCCCGATAAAAGACCGCGTGTACGTTAAAGAACTGGTAGAAGATCAAAATCCTGCACAAATCCAGTTAGACCTATCTTGTGTAACTGACTATTTAGAGGGTCCTACCCCTAGTATAGCTGGTAAAGCTACAAAGTTAATGGATCCATTATCAGTTACCCGGCAGACAGATACTTCTTATGGATTACAt ] [+] EMBL CD185829 [ CAGTTAGACCTAACTTGTGTAACTGACTATTTAGAGGGTCCTACCCCTAGTATAGCTGGTAAAGCTACAAAGTTAATGGATCCATTATCAGTTACCCGGCAAACAGATACTTCTTATGGATTACGACTAGAGCAGTCAGTAAAGAGATGTAAGAATATGATGGTAGCTGCTTATCACATG GGGAAAAAGCCAGGTGTATCACTTTTAACTGCACTTGAATCTCAACAAGCATTGGCAGATGTCTCACCTGGTGGTTGCCTCATCGGTGGGAAACTTAATGAACGTTCGAAACCATGCGACTTAAATAGTGATCAATCATCTTTACGTTTGTTTGAGCCAGGAAGAAACAATCGTAT ] [+] EMBL CD186034 [ CAGTTAGACCTAACTTGTGTAACTGACTATTTAGAGGGTCCTACCCCTAGTATAGCTGGTAAAGCTACAAAGTTAATGGATCCATTATCAGTTACCCGGCAAACAGATACTTCTTATGGATTACGACTAGAGCAGTCAGTAAAGAGATGTAAGAATATGATGGTAGCTGCTTATCACATG GGGAAAAAGCCAGGTGTATCACTTTTAACTGCACTTGAATCTCAACAAGCATTGGCAGATGTCTCACCTGGTGGTTGCCTCATCGGTGGGAAACTTAATGAACGTTCGAAACCATGCGACTTAAATAGTGATCAATCATCTTTACGTTTGTTTGAGCCAGGAAGAAACAATCGTAT ] [+] EMBL CD127300 [ catagtaGGTAGCTGCTTATCACATGTGGGAAAAAGCCAGGTGTATCACTTTCAACTGCACTTGAATCTCAACAAGCATTGGCAGATGTCTCACCTGGTGGTTGCCTCATCGGTGGGAAACTTAATGAACGTTCGAAACCATGCGACTTAAGTAGTGATCAATCATCTTTACGTTTGTTTGAGCCAGGAAGAAACAATCGTATTTCGAACTCTCCGAAAGTGTCTGATGAACACCATGCTAATGACGATGTCAATCGTGGCCCGCCACTACTCACACCAGAACAGGTTAAAGATTTGTCACTTTTATATTCTAGTGCCGCTGAACTCTTAAGACATTTCTGGGCATGTTTCCCTGTAACAACCCCACAGCTAGCTGATAAGTTAGATCGTGTTGCTGCCAGTCTTACTCGTTTTCGTACAACCAAGGTGATCCACTTCGCCGCTGGTGTTGATCCGTCTTTGATGACTAAGTCAGACACATATTCTTCTGAT ] [-] EMBL CD137956 [ AATCATCTTTACGTCTGTTTGAGCCAGGAAGAAACAATCGTATTTCGAACTCTCCGAAAGTGTCTGATGAACACCATGCTAATGACGATGTCAATCGTGGCCCGCCACTACTCACACCAGAACAGGTTAAAGATTTGTCACTTTTATATTCTAGTGCCGCTGAACTCTTAAGACATTTCTGGGCATGTTTCCCTGTAACAACCCCACAGCTAGCTGATAAGTTAGATCGTGTTGCTGCCAGTCTTACTCGTTTTCGTACAACCAAGGTGATCCACTTCGCCGCTGGTGTTGATCCGTC ] [-] EMBL CD073347 [ GGCCCGCCACTACTCACACCAGAACAGGTTAAAGATTTGTCACTTTTATATTCTAGTGCCGCTGAACTCTTAAGACATTTCTGGGCATGTTTCCCTGTAACAACCCCACAGGTAGATGATAAGTTAGATCGTGTTGCTGCCAGTCTTACTCGTTTTGGTACAACCAAGGTGATCCACTTCGCCGATGGTGTTGATCCGTCTTTGATGAGTAAGTCAGACACATATTCTTGTGATTCATCCGAACATCTACTTAACACAGGAAATTCTGGGCTTATTTCTTACCGTTCAAGTGTGACTAGTCACCTGGAATCGATGATGGACTCCGCTCAAAAGAAGTATTCTGAATGGAAAACTCGGCATTCGCAATAATGTAAATATCTGTACAGATCGAATTTTTCGGGATTTTGCTTCGCGATTTTCTGTCTCCATTCTCTGGTAATTCATTACTCTAAATAATTACTGTTTCGTGGCATTATGCTGAACTTGTATATATTAACTCTCCGGATGCCATTTGAACAATTCATTGCCAGATT] [-] EMBL CD073011 [ CTCTTAAGACATTTTTGGGCATGTTTCCCTGTAACAACCCCACAGCTAGCTGATAAGTTAGATCGTGTTGCTGCCAGTCTTACTCGTTTTCGTACAACCAAGGTGATCCACTTCGCCGCTGGTGTTGATCCGTCTTTGATGACTAAGTCAGACACATATTCTTTTGATTCATCCGAACATCTACCTAACACAGGAAATTCTGGGCTTATTTCTTACCGTTCAAGTGTGACTAGTCACCTGGAATCGATGCTGGACTCCGCTCAAAAGAAGTATTCTGAATGGAAAACTCGGCATTCGCAATAATGTAAATATCTGTACAGATCGAATTTTTCGGGATTTTGCTTCGCGATTTTCTGTCTCCATTC CTGGTAATTCATTACTCTAAATAATTACTGTTTCGTGGCATTATGCTGAAC TGTATATATTTACTCTCCGGATGTTATTTGAACAATTCATTGACAGATT] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||