These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9784#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1145 fasta sequence [ATCAACTGGATCTTAACAATCATTATGGTTCTTACATTAGTATAAACTTCGTATTTGTTTTTCTTTCATTCCATCATCAAGGTGGGTCACTAAAGGTCTGAAGTTTGGTTGACATCAGGCAAGAATACTGCCACTTTCTCAACGAATGAGAACTCGATGCCTAAGTCTCTCAGAACAACTGTTTTCAAAGACCCTGAGCTGTCAAAATATTTCAGTCATGAAAATCCAACGACTGTATTTACTGACTTTCGCCAAATTGGTTGTGGCAGCTTTGGAGCAGTCTACTATGCTCGGAATCGTACAACAGGTGAAGTCGTAGCTATCAAAGAGCTGAAAGTTGACACTAAACGTAAGAAGTCTGAAGAAGAGTGGAATGACATCGTTAGAGAGATAAAATTTCTATCTCATCTTTCACATAAAAACTGTGTATTGCCCAAAGGATGCTTCATGAAAGAGCAAACTCCATGGTTAGTCATGGAATACTGCATTGGCTCAGTCGCAGATGTTTTAGAAGTACACAAAAAACCACTTCGAGAGGATGAAATCGCCTGTATCGTTCAGGAAGTACTAACTGGTCTTGACTACTTGCATTCTGAGAAAAGAATTCATCGGGACATAAAAGCAGCTAATATTTTACTCACAGACTCTGGTGGAGTAAAGATTGGTGATTTCGGATCAGCTAGTTTTGTGAGTCCG-GCCAATAGTTTCGTGGGAACA-CCATTTTGGATTGCTCCTGAAGTCATTCTAGCTATGGAAACAA-GCATATATGACGTACGAGTGGATGTTTGGTCTTTAGGAATTACATGTATTGAAATGGCTGAGTTGGAACCTCCTTACTTCAGCGCTACCAATCCAATGGCTGCACTATATCAAATTGCTTCAAATGATGCCCCACGACTAGTGGGAGGTAGCTGGTCTGATGAATTTCGGGATTTTGTACGGTTCGTTCTCCAAAAAGATATGAATGAAAGACCATTTTGTTCTCAAGCCATGACACACCCCTTCTTGGCTAGTGTGTTTCGTTTTTCCCATATTCTTCCAGAGTTAATTCAGCGAACTAAAGCAGCCGTAGCTGCCCAAGAAAATCAAATCAGTCAAAAGTGGAAGAAAATTCTTTATGAAAGTGATTTAAATCATTCTCCATC] [+] EMBL AI975061 [ATCAACTGGATCTTAACAATCATTATGGTTCTTACATTAGTATAAACTTCGTATTTGTTTTTCTTTCATTCCATCATCAAGGTGGGTCACTAAAGGTCTGAAGTTTGGTTGACATCAGGCAAGAATACTGCCACTTTCTCAACGAATGAGAACTCGATGCCTAAGTCTCTCAGAACAACTGTTTTCAAAGACCCTGAGCTGTCAAAATATTTCAGTCATGAAAATCCAACGACTGTATTTACTGACTTTCGCCAAATTGGTTGTGGCAGCTTTGGAGCAGTCTACTATGCTCGGAATCGTACAACAGGTGAAGTCGTAGCTATCAAAGAGCTGAAAGTTGACACTAAACGTAAGAAGTCTGAAGAAGAGTGGAATGACATCGTTAGAGAGATAAAAATTCTATCTCA ] [+] EMBL BG931090 [ TCACTAAAGGTCTGAAGTCTGGTTGACATCAGGCAAGAATACTGCCACTTTCTCAACGAATGAGAACTCGATGCCTAAGTCTCTCAGAACAACTGTTTTCAAAGACCCTGAGCTGTCAAAATATTTCAGTCATGAAAATCCAACGACTGTATTTACTGACTTTCGCCAAATTGGTTGTGGCAGCTTTGGAGCAGTCTACTATGCTCGGAATCGTACAACAGGTGAAGTCGTAGCTATCAAAGAGCTGAAAGTTGACACTAAACGTAAGAAGTCTGAAGAAGAGTGGAATGACATCGTTAGAGAGATAAAATATCTATCTCATCTTTCACATAAAAACTGTGTATTGCCC ] [+] EMBL CD118422 [ TCTGAAGTTTGGTTGACATCAGGCAAGAATACTGCCACTTTCTCAACGAATGAGAACTCGATGCCTAAGTCTCTCAGAACAACTGTTTTCAAAGACCCTGAGCTGTCAAAATATTTCAGTCATGAAAATCCAACGACTGTATTTACTGACTTTCGCCAAATTGGTTGTGGCAGCTTTGGAGCAGTCTACTATGCTCGGAATCGTACAACAGGTGAAGTCGTAGCTATCAAAGAGCTGAAAGTTGACACTAAACGTAAGAAGTCTGAAGAAGAGTGGAATGACATCGTTAGAGAGATAAAATTTCTATCTCATCTTTCACATAAAAACTGTGTATTGCCCAAAGGATGCTTCATGAAAGAGCAAACTCCATGGTTAGTCATGGAATACTGCATTGGCTCAGTCGCAGATGTTTTAGAAGTACACAAAAAACCACTTCGAGAGGATGAAATCGCCTGTATCGTTCAGGAAGTACTAACTGGTCTTGACTACTTGCATTCTGAGAAAAGAATTCATCGGGACATAAAAGCAGCTAATATTTTACTCACAGACTCTGGTGGAGTAAAGATTGGTGATTTCGGATCAGCTAGTTTTGTGAGTCCG GCCAATAGTTTCGTGGGAACA CCATTTTGGATTGCTCCTGAAGTCATTCTAGCTATGGAAACAA GCATA ] [+] EMBL CD179853 [ CTCTCAGGACAACTGTTTTCAAAGACCCTGAGCTGTCAAAATATTTCAGTCATGAAAATCCAACGACTGTATTTACTGACTTTCGCCAAATTGGTTGTGGCAGCTTTGGAGCAGTCTACTATGCTCGGAATCGTACAACAGGTGAAGTCGTAGCTATCAAAGAGCTGAAAGTTGACACTAAACGTAAGAAGTCTGAAGAAGAGTGGAATGACATCGTTAGAGAGAATAAATTTCTATCTCAa ] [+] EMBL CD179921 [ CTCTCAGGACAACTGTTTTCAAAGACCCTGAGCTGTCAAAATATTTCAGTCATGAAAATCCAACGACTGTATTTACTGACTTTCGCCAAATTGGTTGTGGCAGCTTTGGAGCAGTCTACTATGCTCGGAATCGTACAACAGGTGAAGTCGTAGCTATCAAAGAGCTGAAAGTTGACACTAAACGTAAGAAGTCTGAAGAAGAGTGGAATGACATCGTTAGAGAGATAAAATTTCTATCTCATCTTTCACATAAAAACTGTGTATTGCCCAAAGGATGCTTCATGAAAGAGCAAACTCCATGGTTAGTCATGGAATACTGCATNTGCTCAGTCGCAGATGTTnt ] [-] EMBL CD183636 [ ACTATGCTCGGAATCGTACAACAGGTGAAGTCGTAGCTATCAAAGAGCTGAAAGTTGACACTAAACGTAAGAAGTCTGAAGAAGAGTGGAATGACATCGTTAGAGAGATAAAATTTCTATCTCATCTTTCACATAAAAACTGTGTATTGCCCAAAGGATGCTTCATGAAAGAGCAAACTCCATGGTTAGTCATGGAATACTGCATTGGCTCAGTCGCAGATGTTTTAGAAGTACACAAAAAACCACTTCGAGAGGATGAAATCGCCTGTATCGTTCAGGAAGTACTAACTGGTCTTGACTACTTGCATTCTGAGAA ] [-] EMBL CD130881 [ TGAAGTCGTAGCTATCAAAGAGCTGAAAGTTGACACTAATCGTAAGAAGTCTGAAGAAGAGTGGAATGACATCGTTAGAGAGATAAAATTTCTATCTCATCTTTCACATAAAAACTGTGTATTGCCCAAAGGATGCTTCATGAAAGAGCAAACTCCATGGTTAGTCATGGAATACTGCATTGGCTCAGTCGCAGATGTTTTAGAAGTACACAAAAAACCACTTCGAGAGGATGAAATCGCCTGTATCGTTCAGGAAGTACTAACTGGTCTTGACTACTTGCATTCTGAGAAAAGAATTCATCGGGACATAAAAGCAGCTAATATTTTACTCACAGACTCTGGTGGAGTA ] [-] EMBL CD068142 [ TCGGGACATAAAAGCAGCTAATATTTTACTCACAGACTCTGGTGGAGTAAAGATTGGTGATTTCGGATCAGCTAGTTTTGTGAGTCCG GCCAATAGTTTCGTGGGAACA CCATTTTGGATTGCTCCTGAAGTCATTCTAGCTATGG AACAAGGCATATATGACGTACGAGTGGATGTTTGGTCTTTAGGAATTACATGTATTGAAATGGCTGAGTTGGAACCTCCTTACTTCAGCGCTACCAATCCAATGGCTGCACTATATCAAATTGCTTCAAATGATGCCCCACGACTAGTGGGAGGTAGCTGGTCTGATGAATTTCGGGATTTTGTACGGTTCGTTCTCCAAAAAGATATGAATGAAAGACCATTTTGTTCTCAAGCCATGACACACCCCTTCTTGGCTAGTGTGTTTCGTTTTTCCCATATTCTTCCAGAGTTAATTCAGCGAACTAAAGCAGCCGTAGCTGCCCAAGAAAATCAAATCAGTCAAAAGTGGAAGAAAATTCTTTATGAAAGTGATTTAAATCATTCTCCATC] [-] EMBL CD121130 [ GAGTAAAGAAGGGTGATTTCGGATCAGCTAGTTTTGTGAGTCCGAGCCAATAGTTTCGTGGGAACACCCATTTTGGATTGCTCCTGAAGTC ] consensusID : consensus_9784#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 481 fasta sequence [CATTTAGTTAGATTTGTATCATCATGACACCGAATCTTATTTAGACTCAAAGTGGAAAGTGACTAAAATTTGAGCATCGATTCTGTTTCTTAACATCATTTTGTGTACATTTTTACTGATTTTGTATGCTCCACTAGTTTTCTACGATTCCCATTATTAGGTTTTGTGCAGTTTTATTCTCATGATAGTTATGGTCTGATCTTCAATAGATCATTTTTTTCTTCATATAGTTAAAATTTTGGTAGAAACTGACAGTAATAAATAACCGTCATCATTCAACTCACATTAGTAATGTTCGATGTCAAAATAAATGCGGTGTCTTATTTTATTTTGTAGATGAATGAAAGACCATTTTGTTCTCAAGCCATGACACACCCCTTCTTGGCTAGTGTGTTTCGTTTTTCCCATATTCTTCCAGAGTTAATTCAGCGAACTAAAGCAGCCGTAGCTGCCCAAGAAAATCAAATCAGTCAAAAGTAAA] [-] EMBL CD089463 [CATTTAGTTAGATTTGTATCATCATGACACCGAATCTTATTTAGACTCAAAGTGGAAAGTGACTAAAATTTGAGCATCGATTCTGTTTCTTAACATCATTTTGTGTACATTTTTACTGATTTTGTATGCTCCACTAGTTTTCTACGATTCCCATTATTAGGTTTTGTGCAGTTTTATTCTCATGATAGTTATGGTCTGATCTTCAATAGATCATTTTTTTCTTCATATAGTTAAAATTTTGGTAGAAACTGACAGTAATAAATAACCGTCATCATTCAACTCACATTAGTAATGTTCGATGTCAAAATAAATGCGGTGTCTTATTTTATTTTGTAGATGAATGAAAGACCATTTTGTTCTCAAGCCATGACACACCCCTTCTTGGCTAGTGTGTTTCGTTTTTCCCATATTCTTCCAGAGTTAATTCAGCGAACTAAAGCAGCCGTAGCTGCCCAAGAAAATCAAA ] [-] EMBL CD089470 [ GTTTTATTCTCATGATAGTTATGGTCTGATCTTCAATAGATCATTTTTTTCTTCATATAGTTAAAATTTTGGTAGAAACTGACAGTAATAAATAACCGTCATCATTCAACTCACATTAGTAATGTTCGATGTCAAAATAAATGCGGTGTCTTATTTTATTTTGTAGATGAATGAAAGACCATTTTGTTCTCAAGCCATGACACACCCCTTCTTGGATAGTGTGTTTCGTTTTTCCCATATTCTTCCAGAGTTAATTCAGCGAACTAAAGCAGCCGTACCTGCCCAAGAAAATCAAATCAGTCAAAAGTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9784#0 ATCAACTGGATCTTAACAATCATTATGGTTCTTACATTAGTATAAACTTCGTATTTGTTT 60 consensus_9784#1 ------------------------------------------------------------ consensus_9784#0 TTCTTTCATTCCATCATCAAGGTGGGTCACTAAAGGTCTGAAGTTTGGTTGACATCAGGC 120 consensus_9784#1 ------------------------------------------------------------ consensus_9784#0 AAGAATACTGCCACTTTCTCAACGAATGAGAACTCGATGCCTAAGTCTCTCAGAACAACT 180 consensus_9784#1 ------------------------------------------------------------ consensus_9784#0 GTTTTCAAAGACCCTGAGCTGTCAAAATATTTCAGTCATGAAAATCCAACGACTGTATTT 240 consensus_9784#1 ------------------------------------------------------------ consensus_9784#0 ACTGACTTTCGCCAAATTGGTTGTGGCAGCTTTGGAGCAGTCTACTATGCTCGGAATCGT 300 consensus_9784#1 ------------------------------------------------------------ consensus_9784#0 ACAACAGGTGAAGTCGTAGCTATCAAAGAGCTGAAAGTTGACACTAAACGTAAGAAGTCT 360 consensus_9784#1 ------------------------------------------------------------ consensus_9784#0 GAAGAAGAGTGGAATGACATCGTTAGAGAGATAAAATTTCTATCTCATCTTTCACATAAA 420 consensus_9784#1 ------------------------------------------------------------ consensus_9784#0 AACTGTGTATTGCCCAAAGGATGCTTCATGAAAGAGCAAACTCCATGGTTAGTCATGGAA 480 consensus_9784#1 ------------------------------------------------------------ consensus_9784#0 TACTGCATTGGCTCAGTCGCAGATGTTTTAGAAGTACACAAAAAACCACTTCGAGAGGAT 540 consensus_9784#1 ------------------------------------------------------------ consensus_9784#0 GAAATCGCCTGTATCGTTCAGGAAGTACTAACTGGTCTTGACTACTTGCATTCTGAGAAA 600 consensus_9784#1 --------------CATTTAGTTAGATTTGTATCATCATGAC--ACCGAATCTT---ATT 41 * ** ** ** * * ** **** * ** * * consensus_9784#0 AGAATTCATCGGGACATAAAAGCAGCTAATATTTTACTCACAGACTCTGGTGGAGTAAAG 660 consensus_9784#1 TAGACTCAAAGTGG----AAAGTGACTAAAATTTGAG-CATCGATTCTGTTTCTTAACAT 96 * *** * * **** **** **** * ** ** **** * * * consensus_9784#0 ATTGGTGATTTCGGATCAGCTAGTTTTGTGAGTCCGGCCAATAGTTTCGTGGGAACACCA 720 consensus_9784#1 CATTTTGTGTACATTTTTACTGATTTTGTATGCT---CCACTAGTTTTCTACGATTCCCA 153 * ** * * * ** ****** * *** ****** * ** *** consensus_9784#0 TT-TTGGATTGCTCCTGAAGTCATTCTAGCTATGGAAACAAGCATATATGACGTACGAGT 779 consensus_9784#1 TTATTAGGTTTTGTGCAGTTTTATTCTCATGATAGTTATGGTC-----TGATCTTCAA-T 207 ** ** * ** * ***** ** * * * *** * * * * consensus_9784#0 GGATGTTTGGTCTTTAGGAATTACATGTATTGAAATGGCTGAGTTGGAACCTCCTTACTT 839 consensus_9784#1 AGATCATTTTTTTCT-----TCATATA-GTTAAAAT--TTTGGTAGAAACT--------- 250 *** ** * * * * * ** ** **** * ** * *** consensus_9784#0 CAGCGCTACCAATCCAATGGCTGCACTATATCAAATTGCTTCAAATGATGCCCCACGACT 899 consensus_9784#1 -GACAGTAATAA----ATAACCGTCATCATTCAACTCACATTAG-TAATGTTCGATG--- 301 * ** ** ** * * * **** * * * * * *** * * * consensus_9784#0 AGTGGGAGGTAGCTGGTCTGATGAATTTCGGGATTTTGTACGGTTCGTTCTCCAAAAAGA 959 consensus_9784#1 ----------------TCAAAATAAATGCGGTGTCTTAT----TTTATTTTGTAGA---- 337 ** * ** * *** * ** * ** ** * * * consensus_9784#0 TATGAATGAAAGACCATTTTGTTCTCAAGCCATGACACACCCCTTCTTGGCTAGTGTGTT 1019 consensus_9784#1 --TGAATGAAAGACCATTTTGTTCTCAAGCCATGACACACCCCTTCTTGGCTAGTGTGTT 395 ********************************************************** consensus_9784#0 TCGTTTTTCCCATATTCTTCCAGAGTTAATTCAGCGAACTAAAGCAGCCGTAGCTGCCCA 1079 consensus_9784#1 TCGTTTTTCCCATATTCTTCCAGAGTTAATTCAGCGAACTAAAGCAGCCGTAGCTGCCCA 455 ************************************************************ consensus_9784#0 AGAAAATCAAATCAGTCAAAAGTGGAAGAAAATTCTTTATGAAAGTGATTTAAATCATTC 1139 consensus_9784#1 AGAAAATCAAATCAGTCAAAAGTAAA---------------------------------- 481 *********************** * consensus_9784#0 TCCATC 1145 consensus_9784#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||