These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9785#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 514 fasta sequence [GAAGCTAAAGCCGAGGCTCAGGCAGAAATCGAAGCTGAACGAGCTGAGCGTGAGCATCACTTTAAAATTTGTGAGGGCAAAGTGAGTTGTCTGTGTATGTGATTTTCTGTTCATTCCGTAATGCTAACTTAAATAGATACTTACGCCTGTTACCCTTCGTGAAGGAGTATAGGCTGCCCACCAGGACTCTCCATTGAATCCTGTCCTGGACAATCCTTCCCAGTTGCTACCCATCCTTTTGATACCTGTTTTCAATTGCCGACACAGTGTGTTCTTTGGTCTTCCTCTTTTCCGCTTCTCGTCAGAATTTCATGTTAGTGCTTACTTCGTGATGCAGTTTGGTGATTTCCGCAATATGTTTCATCCACGTCCAGCGTCTTGACGTTCGTATTGAAGACTGTGATTTAGATATTGCTTGACAGTTATTTTGAGTTCCATTTGTTCTTCAACTGATGGAATGCGCCCCTTGCTTTGCCAATTCTCGCCTTTACATCTGCATCTAGAACCTCCCTTG] [+] EMBL CD119076 [GAAGCTAAAGCCGAGGCTCAGGCAGAAATCGAAGCTGAACGAGCTGAGCGTGAGCATCACTTTAAAATTTGTGAGGGCAAAGTGAGTTGTCTGTGTATGTGATTTTCTGTTCATTCCGTAATGCTAACTTAAATAGATACTTACGCCTGTTACCCTTCGTGAAGGAGTATAGGCTGCCCACCAGGACTCTCCATTGAATCCTGTCCTGGACAATCCTTCCCAGTTGCTACCCATCCTTTTGATACCTGTTTTCAATTGCCGACACAGTGTGTTCTTTGGTCTTCCTCTTTTCCGCTTCTCGTCAGAATTTCATGTTAGTGCTTACTTCGTGATGCAGTTTGGTGATTTCCGCAATATGTTTCATCCACGTCCAGCGTCTTGACGTTCGTATTGAAGACTGTGATTTAGATATTGCTTGACAGTTATTTTGAGTTCCAT ] [-] EMBL CD118916 [ ATGTGATTTTCTGTTCATTCCGTAATGCTAACTTAAATAGATACTTACGCCTGTTACCCTTCGTGAAGGAGTATAGGCTGCCCACCAGGACTCTCCATTGAATCCTGTCCTGGACAATCCTTCCCAGTTGCTACCCATCCTTTTGATACCTGTTTTCAATGACCGACACAGTGTGTTCTTTGGTCTTCCTCTTTTCCGCTTCTCGTCAGAATTTCATGTTAGTGCTTACTTCGTGATGCAGTTTGGTGATTTCCGCAATATCTTTCATCCACGTCCAGCGTCTTGACGTTCGTATTGAAGACTGTGATTTAGATATTGCTTGACAGTTATTTTGAGTTCCATTTGTTCTTCAACTGATGGAATGCGCCCCTTGCTTTGCCAATTCTCGCCTTTACATCTGCATCTAGAACCTCCCTTG] consensusID : consensus_9785#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 471 fasta sequence [TGCAAGCCGAAAAGAGTGCTAGTGAGAAAGTAATGAAGCGAAAAGGCGTAAGCTAACGATTAAAGGAAGCTAAAGCCGAGGCTCAGGCAGAAATCGAAGCTGAACGAGCTGAGCGTGAGCATCACTTTAAAATTTGTGAGGGCAAAGTACTTGGTCGTCGATCAGAAATTGAGTCGCAGATTCAAAAGCTAA-CCCAAGAAATAATCAATACTCAAACTGCCTCTGTGAATCTTCATAAAGAAGACGCCATAAATATGTTATTGAATTGTGTTATGCAAATTCAGCCACAGCTACACAAAAATTATCGCAATGGAATAACGGGTTAACCAACAGTATTCTAAATTTGATGTTATACGAATCAGT-AATTTTAGACAATAAAACTGCAAATGCATAATACTTGATCATTTGGTTTCTCTTTATTATTCCTAATATATATTATTATCTGCAAATAATCAAACAAATAAATTATTT] [+] EMBL CD077403 [TGCAAGCCGAAAAGAGTGCTAGTGAGAAAGTAATGAAGCGAAAAGGCGTAAGCTAACGATTAAAGGAAGCTAAAGCCGAGGCTCAGGCAGAAATCGAAGCTGAACGAGCTGAGCGTGAGCATCACTTTAAAATTTGTGAGGGCAAAGTACTTGGTCGTCGATCAGAAATTGAGTCGCAGATTCAAAAGCTAA CCCAAGAAATAATCAATACTCAAACTGCCTCTGTGAATCTTCATAAAGAAGACGCCATANATATGTTATTGAATTGTGTTATGCAAATTCAGCCACAGCTACACAAAAATTATCGCAATGGAATAACGGGTTAACCAACAGTATTCTAAATTTGATGTTATACGAATCAGTAAATTTTAGACAATAAAACTGCAAATGCATAATACTTGATCATTTGGTTTCTCTTTATTATTCCTAATATATATTATTATCTGCAAATAATCAAACAAATAAATTATTT] [+] EMBL CD136202 [ ATCGAAGCTGAACGAGCTGAGCGTGAGCATCACTTTAAAATTTGTGAGGGCAAAGTACTTGGTCGTCGATCAGAAATTGAGTCGCAGATTCAAAAGCTAA CCCAAGAAATAATCAGCACTCAAACTGCCTCTGTGAATCTTCATAAAGAAGACGCCATAAATATGTTATTGAATTGTGTT ] [+] EMBL CD136227 [ GAGCGTGAGCATCACTTTAAAATTTGTGAGGGCAAAGTACTTGGTCGCCGATCAGAAATTGAGCCGCAGATTCAAAAGCTAC CCCAAGAAATAATCAATACTCAAACTGCCTCTGTGAATCTTCATAAAGAAGACGCCATAAATATGTTATTGAATTGTGTTATGCAAATT ] [-] EMBL CD136355 [ AGCGTGAGCATCACTTTAAAATTTGTGAGGGCAAAGTACTTGGTCGTCGATCAGAAATTGAGTCGCAGATTCAAAAGCTAA CCCCAGAAATAATCAATACTCAAACTGCCTCTGTGAATCTTCATAAAGAAGACGCCATAAATATGTTATTGAATTGTGTTATGCAAA ] [+] EMBL CD061262 [ CGTGAGCATCACTTTAAAACTTGTGAGGGCAAAGTACTTGGTCGTCGATCAGAAATTGAGTCGCAGATTCAAAAGCTAA CCCAAGAAATAATCAATACTCAAACTGCCTCTGTGAACCTTCATAAAGAAGACGCCATAAATATGTTATTGAATTGTGTTATGCAAATTCAGCCACCGCTACACAAAAATTATCGCAATGGAATAACGGGTTAACCAACAGTATTCTAAATTTGATGTTATACGAATCAGT AATTTTAGACAATA ] [+] EMBL CD181671 [ TCACTTTAAAATTTGTGAGGGCAAAGTACTTGGTCGTCGATCAGAAATTGAGTCGCAGATTCAAAAGCTAA CCCAAGAAATAATCAATACTCAAACTGCCTCTGTGAATCTTCATAAAGAAGACGCCATAAATATGTTATTGAATTGTG ] [-] EMBL CD193852 [ TTGTGAGGGCAAAGTACTTGGTCGTCGATCAGAAATTGAGTCGCAGATTCAAAAGCTAA CCCAAGAAATAATCAATACTCAAACTGCCTCTGTGAATCTTCATAAAGAAGACGCCATAAATATGTTATTGAATTGTGTTATGCAAAT ] [+] EMBL CD145751 [ GTACTTGGTCGTCGATCAGAAATTGAGTCGCAGATTCAAAAGCTAA CCCAAGAAATAATCAATACTCAAACTGCCTCTGTGAATCTTCATAAAGAAGACGCCATAAATATGTTATTGAATTGTGTTATGCAAATTCAGCCACAGCTACACAAAAATTATCGCAATGGAATAACGGGTTAACCAACAGTATTCTAAATTTGATGTTATACGAATCAGT AATTTTAGACAATAAAACTGCAA ] [-] EMBL AI740413 [ ggAATTGAGTCGCAGATTCAAAAGCTAACCCCCAGAAATAGTCAATACTCAAAATGCCTCTGGGGGGCTTCCTAAAGAAGGCCCCATAAATATGTTATTGAATTGTGTTATGCAAATTCAGCCACAGCTACCCAAAAATTTTCCCAATGGAATAACGGGTTAACCAACAGTWTTCTAAATTTGATGTTTTACGAATCAGT AATTTTAGACAATAAAACTGCAAATGCATAATACTTGATCATTTGGTTTCTCTTTATTATTCCTAATATATATTATTATCTGCAAATAATCAAACAAATAAATTAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9785#0 ------------------------------------------------------------ consensus_9785#1 TGCAAGCCGAAAAGAGTGCTAGTGAGAAAGTAATGAAGCGAAAAGGCGTAAGCTAACGAT 60 consensus_9785#0 -----GAAGCTAAAGCCGAGGCTCAGGCAGAAATCGAAGCTGAACGAGCTGAGCGTGAGC 55 consensus_9785#1 TAAAGGAAGCTAAAGCCGAGGCTCAGGCAGAAATCGAAGCTGAACGAGCTGAGCGTGAGC 120 ******************************************************* consensus_9785#0 ATCACTTTAAAATTTGTGAGGGCAAAGTGAGTTGTCTGTGTATGTGATTTTCTGTT-CAT 114 consensus_9785#1 ATCACTTTAAAATTTGTGAGGGCAAAGT-ACTTGGTCGTCGATCAGAAATTGAGTCGCAG 179 **************************** * *** ** ** ** ** ** ** consensus_9785#0 TCCGTAATGCTAACTTAAATAGATACTTACGCCTGTTAC--CCTTCGTGAAGGAGTATAG 172 consensus_9785#1 ATTCAAAAGCTAACCCAAG-AAATAATCAATACTCAAACTGCCTCTGTGAATCTTCATAA 238 ** ****** ** * *** * * ** ** *** ***** *** consensus_9785#0 GCTGCCCACCAGGACTCT-CCATTGAATCCTGTCCTGGACAATCCTTCCCAGTTGC-TAC 230 consensus_9785#1 AGAAGACGCCATAAATATGTTATTGAATTGTGTTATGCAAATTCAGCCACAGCTACACAA 298 * *** * * * ******* *** ** * * ** * *** * * * consensus_9785#0 CCATCCTTTTGATACCTGTTTTCAATTGCCGACACAGTGTGTTCTTTGGTCTTCCTCTTT 290 consensus_9785#1 AAATTATCGCAATGGAATAACGGGTTAACCAACAGTATTCTAAATTTGATGTTATACGAA 358 ** * ** * ** *** * **** * ** * consensus_9785#0 TCCGCTTCTCGTCAGAATTTCA-TGTTAGTGCTTACTTCGTGATGCAGTTTGGTGATTTC 349 consensus_9785#1 TCAGTAATTTTAGACAATAAAACTGCAAATGCATAATACTTGAT--CATTTGGTT-TCTC 415 ** * * * *** * ** * *** ** * * **** ****** * ** consensus_9785#0 CGCAATATGTTTCATCCACGTCCAGCGTCTTGACGTTCGTATTGAAGACTGTGATTTAGA 409 consensus_9785#1 TTTATTATTCCTAATATATATT-ATTATCTGCAAATAATCAAACAAATAAATTATTT--- 471 * *** * ** * * * *** * * * ** * **** consensus_9785#0 TATTGCTTGACAGTTATTTTGAGTTCCATTTGTTCTTCAACTGATGGAATGCGCCCCTTG 469 consensus_9785#1 ------------------------------------------------------------ consensus_9785#0 CTTTGCCAATTCTCGCCTTTACATCTGCATCTAGAACCTCCCTTG 514 consensus_9785#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||