cluster # 9799

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Schistosoma mansoni
cluster # 9799 cluster # 9799 Sequences # 11 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9799#0 length = 1016 sequences # 10

consensus_9799#1 length = 343 sequences # 1

consensusID : consensus_9799#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1016
fasta sequence

                              [CATAAGTTTATGTATGAAATTTATGAAAAGACTGTACAAATAAGAAAATGAAAAAGATACAAGTCT-GAATCTGACCAGTTAGAAATCATTTATCAAACACTTTCGAAAAGTTCTTTAAGATGACGTCCAAGGCGCTTTAGAAGTAAACTTTGAAGAGGAGTAAAAAGGAGTTGGGAACTTCATGCTACATCGACAACTGAACGAGGTAAGTCACCATAATTACGAGATCTGGCGCGCATTAACTGTCTTTGTCGAATGGCCGATGGTGAAGCAACTGATGCGAGATTAGCAGCGGCTGGGCTCACACGATTTCGATTACGCCTAACGGCTGACCTTTCACCTCCATTAGCGAAAGCAGCACCAGACTTTAGGGCCTCCATTAAATTATCAATGACATTTCCCTCTTCCTCTGTAGGTGCCCTGGGTCCTGAGCTATTCAGAATAGCTTTATCCTCACGTTCACGCTGACGGCGTGCTTGCTCGTCCCGTGCCTTTTTCATTTTTTCTTCCAATGCATGCTTTTTCGCCAGGTCAGAAGCAGAACGTTTAAAGGCAACATGGAAGTCTTTCAAATCAGAAAATAAATTCTCCATATGGTATTTGTTGGGATCAAATGCCAAGTATTTAGAAACTGTCACAAATTTATCCTGCATTCGTTTATGCATCATTTCTAGCTGTGACAACTGTTCTTTAGCGGATACAAGGAAATCTTGCATTACAGGAATATAATTGTCATTAGGTTCTTGAGCTTTGTATGTCTTTAAGTCTGTATCAATATTGGAAACGGACTTCTTCATTTCTGCAATGTTGGCTTTTAGACTATCCTCAGAGACACGGCAAGCTCGTTCAACATGCGAGAAATCATCCAGAAACCCTTTAACAGTTTCTGGGAATTTTCGATCAAGAGAGCCAATCAAAAAATGAAGTAACGTCTGAGAATTGGAGACATCTTTTGTCGCCTCTAACTTGGTTAGAAAACTAATTTCAAATCCAATCGCCTCTGCATTCCTGGACCC]

[+] EMBL CD077013             [CATAAGTTTATGTATGAAATTTATGAAAAGACTGTACAAATAAGAAAATGAAAAAGATACAAGTCTGGAATCTGACCAGTTAGAAATCATTTATCAAACACTTTCGAAAAGTTCTTTAAGATGACGTCCAAGGCGCTTTAGAAGTAAACTTTGAAGAGGAGTAAAAAGGAGTTGGGAACTTCATGCTACATCGACAACTGAACGAGGTAAGTCACCATAATTACGAGATCTGGCGCGCATTAACTGTCTTTGTCGAATGGCCGATGGTGAAGCAACTGATGCGAGATTAGCAGCGGCTGGGCTCACACGATTTCGATTACGCCTAACGGCTGACCTTTCACCTCCATTAGCGAAAGCAGCACCAGACTTTAGGGCCTCCATTAAATTATCAATGACATTTCCCTCTTCCTCTGTAGGTGCCCTGGGTCCTGAGCTATTCAGAATAGCTTTATCCTCACGTTCACGCTGACGGCGTGCTTGCTCGTCCCGTGCCTTTTTCATTTTTTCTTCCAATGCATGCTTTTTCGCCAGGTCAGAAGCAGAACGTTTAAAGGCAACATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD076453             [        TATGTATGAAATTTATGAAAAGACTGTACAAATAAGAAAATGAAAAAGATACAAGTCT GAATCTGACCAGTTAGAAATCATTTATCAAACACTTTCGAAAAGTTCTTTAAGATGACGTCCAAGGCGCTTTAAAAGTAAACTTTGAAGAGGAGTAAAAAGGAGTTGGGAACTTCATGCTACATCGACAACTGAACGAGGTAAGTCACCATAATTACGAGATCTGGCGCGCATTAACTGTCTTTGTCGAATGGCCGATGGTGAAGCAACTGATGCGAGATTAGCAGCGGCTGGGCTCACACGATTTCGATTACGCCTAACGGCTGACCTTTCACCTCCATTAGCGAAAGCAGCACCAGACTTTAGGGCCTCCATTAAATTATCAATGACATTTCCCTCTTCCTCTGTAGGTGCCCTGGGTCCTGAGCTATTCAGAATAGCTTTATCCTCACGTTCACGCTGACGGCGTGCTTGCTCGTCCCGTGCCTTTTTCATTTTTTCTTCCAATGCATGCTTTTTCGCCAGGTCAGAAGCAGAACGTTTAAAGGCAACATGGAAGTCTTTCAAATCAGAAAATAAATTCTC                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD082867             [                                                                                                                                                                                                                                                                                                                                                                                               AATTATCAATGACATTTCCCTCTTCCTCTGTAGGTGCCCTGGGTCCTGAGCTATTCAGAATAGCTTTATCCTCACGTTCACGCTGACGGCGTGCTTGCTCGTCCCGTGCCTTTTTCATTTTTTCTTCCAATGCATGCTTTTTCGCCAGGTCAGAAGCAGAACGTTTAAAGGCAACATGGAAGTCTTTCAAATCAGAAAATAAATTCTCCATATGGTATTTGTTGGGGTCAAATGCCAAGTATTTAGAAACTGTCACAAATTTATCCTGCATTCGTTTATGCATCATTTCTAGCTGTGACAACTGTTCTTTAGCGGATACAAGGAAATCTTGCATTACAGGAATATAATTGTCATTAGGTTCTTGAGCTTTGTATGTCTTTAAGTCTGTATCAATATTGGAAACGGACTTCTTCATTTCTGCAATGTTGGCTTTTAGACTATCCTCAGAGACACGGCAAGCTCGTTCAACATGCGAGAAATCATCCAGAAACCCTTTAACAGTTTCTGGGAATTTTCGATCAAGAGAGCCAATCAAAAAATGAAGTAACGTCTGAGAATTGGAGACATCTTTTGTCGCCTCaa                                                    ]
[+] EMBL BG931244             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGATCAAATGCCAAGTATTTAGAAACTGTCACAAATTGATCCTGCATTCGTTTATGCATCATTTCTAGCTGTGACAACTGCTCTTTAGCGGATACAAGGAAATCTTGCATTACAGGAATATAATTGTCATTAGGTTCTTGAGCTTTGTATGTCTTTAAGTCTGTATCAATATTGGAAACGGACTTCTTCATTTCTGCAATGTTGGCTTTTAGACTATCCTCAGAGACACGGCAAGCTCGTTCAACGTGCGAGAAATCATCCAGAAACCCTTTAACAGTTTCTGGGAATTTTCGATCAAGAGAGCCAATCAAAAAATGAAGTAACGTCTGAGAATCGGAG                                                                       ]
[+] EMBL BG931079             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATCAAATGCCAAGTATTTAGAAACTGTCACAAATTTATTCTGCATTCGTTTATGCATCATTTCTAGCTGTGACAACTGTTCTTTAGCGGATACAAGGAAATCTTGCATTACAGGAATATAATTGTCATTAGGTTCTTGAGCTTTGTATGTCTTTAAGTCTGTATCAATATTGGAAACGGACTTCTTCATTTCTGCAATGTTGGCTTTTAGACTATCCTCAGAGACACGGCAAGCTCGTTCAACATGCGAGAAATCATCCAGAAACCCTTTAACAGTTTCTGGGAATTTTCGATCAAGAGAGCCAATCAAAAAATGAAGTAACGTCTGAGAATTGGAGACATCTTTTGTCGCCTCTAACTTGGTTAGAAAACTAATTTCAAATCCAATCGCCTCTGCATTCCTGGA   ]
[+] EMBL BG931108             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATCAAATGCCAAGTATTTAGAAACTGTCACAAATTTATTCTGCATTCGTTTATGCATCATTTCTAGCTGTGACAACTGTTCTTTAGCGGATACAAGGAAATCTTGCATTACAGGAATATAATTGTCATTAGGTTCTTGAGCTTTGTATGTCTTTAAGTCTGTATCAATATTGGAAACGGACTTCTTCATTTCTGCAATGTTGGCTTTTAGACTATCCTCAGAGACACGGCAAGCTCGTTCAACATGCGAGAAATCATCCAGAAACCCTTTAACAGTTTCTGGGAATTTTCGATCAAGAGAGCCAATCAAAAAATGAAGTAACGTCTGAGAATTGGAGACATCTTTTGTCGCCTCTAACTTGGTTAGAAAACTAATTTCAAATCCAATCGCCTCTGCATTCCTGGA   ]
[+] EMBL BG931199             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATCAAATGCCAAGTATTTAGAAACTGTCACAAATTTATTCTGCATTCGTTTATGCATCATTTCTAGCTGTGACAACTGTTCTTTAGCGGATACAAGGAAATCTTGCATTACAGGAATATAATTGTCATTAGGTTCTTGAGCTTTGTATGTCTTTAAGTCTGTATCAATATTGGAAACGGACTTCTTCATTTCTGCAATGTTGGCTTTTAGACTATCCTCAGAGACACGGCAAGCTCGTTCAACATGCGAGAAATCATCCAGAAACCCTTTAACAGTTTCTGGGAATTTTCGATCAAGAGAGCCAATCAAAAAATGAAGTAACGTCTGAGAATTGGAGACATCTTTTGTCGCCTCTAACTTGGTTAGAAAACTAATTTCAAATCCAATCGCCTCTGCATTCCTGGACCC]
[+] EMBL BG930800             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 gTCAAATGCCAAGTATTTAGAAACTGTCACAAATTTATCCTGCATTCGTTTATGCATCATTTCTAGCTGTGACAACTGTTCTTTAGCGGATACAAGGAAATCTTGCATTACAGGAATATAATTGTCATTAGGTTCTTGAGCTTTGTATGTCTTTAAGTCTGTATCAATACTGGAAACGGACTTCTTCATTTCTGCAATGTTGGCTTTTAGACTATCCTCAGAGACACGGCAAGCTCGTTCAACATGCGAGAAATCATCCAGAAACCCTTTAACAGTTTCTGGGAATTTTCGATCAAGAGAGCCAATCAAAAAATGAAGTAACGTCTGAGAATTGGAGACATCTTTTGTCGCCTCTAACTTGGTTAGAAAACTAATTTCAAATCCAAT                     ]
[+] EMBL BG930883             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 gTCAAATGCCAAGTATTTAGAAACTGTCACAAATTTATCCTGCATTCGTTTATGCATCATTTCTAGCTGTGACAACTGTTCTTTAGCGGATACAAGGAAATCTTGCATTACAGGAATATAATTGTCATTAGGTTCTTGAGCTTTGTATGTCTTTAAGTCTGTATCAATATTGGAAACGGACTTCTTCATTTCTGCAATGTTGGCTTTTAGACTATCCTCAGAGACACGGCAAGCTCGTTCAACATGCGATAAATCATCCAGAAACCCTTTAACAGTTTCTGGGAATTTTCGATCAAGAGAGCCAATCAAAAAAT                                                                                              ]
[+] EMBL BG930886             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 cTCAAATGCCAAGTATTTAGAAACTGTCACAAATTTATCCTGCATTCGTTTATGCATCATTTCTAGCTGTGACAACTGTTCTTTAGCGGATACAAGGAAATCTTGCATTACAGGAATATAATTGTCATTAGGTTCTTGAGCTTTGTATGTCTTTAAGTCTGTATCAATATTGGAAACGGACTTCTTCATTTCTGCAATGTTGGCTTTTAGACTATCCTCAGAGACACGGCAAGCTCGTTCAACATGCGAGAAATCATCCAGAAACCCTTTAACAGTTTCTGGGAATTTTCGATCAAGAGAGCCAATCAAAAAAT                                                                                              ]




>consensus_9799#0
CATAAGTTTATGTATGAAATTTATGAAAAGACTGTACAAATAAGAAAATGAAAAAGATAC
AAGTCTGAATCTGACCAGTTAGAAATCATTTATCAAACACTTTCGAAAAGTTCTTTAAGA
TGACGTCCAAGGCGCTTTAGAAGTAAACTTTGAAGAGGAGTAAAAAGGAGTTGGGAACTT
CATGCTACATCGACAACTGAACGAGGTAAGTCACCATAATTACGAGATCTGGCGCGCATT
AACTGTCTTTGTCGAATGGCCGATGGTGAAGCAACTGATGCGAGATTAGCAGCGGCTGGG
CTCACACGATTTCGATTACGCCTAACGGCTGACCTTTCACCTCCATTAGCGAAAGCAGCA
CCAGACTTTAGGGCCTCCATTAAATTATCAATGACATTTCCCTCTTCCTCTGTAGGTGCC
CTGGGTCCTGAGCTATTCAGAATAGCTTTATCCTCACGTTCACGCTGACGGCGTGCTTGC
TCGTCCCGTGCCTTTTTCATTTTTTCTTCCAATGCATGCTTTTTCGCCAGGTCAGAAGCA
GAACGTTTAAAGGCAACATGGAAGTCTTTCAAATCAGAAAATAAATTCTCCATATGGTAT
TTGTTGGGATCAAATGCCAAGTATTTAGAAACTGTCACAAATTTATCCTGCATTCGTTTA
TGCATCATTTCTAGCTGTGACAACTGTTCTTTAGCGGATACAAGGAAATCTTGCATTACA
GGAATATAATTGTCATTAGGTTCTTGAGCTTTGTATGTCTTTAAGTCTGTATCAATATTG
GAAACGGACTTCTTCATTTCTGCAATGTTGGCTTTTAGACTATCCTCAGAGACACGGCAA
GCTCGTTCAACATGCGAGAAATCATCCAGAAACCCTTTAACAGTTTCTGGGAATTTTCGA
TCAAGAGAGCCAATCAAAAAATGAAGTAACGTCTGAGAATTGGAGACATCTTTTGTCGCC
TCTAACTTGGTTAGAAAACTAATTTCAAATCCAATCGCCTCTGCATTCCTGGACCC

consensusID : consensus_9799#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence

                              [GATCGACGGCGGATCAAATGCCAAGTATTTAGAAACTGTCACAAATTTATTCTGCATTCGTTTATGCATCATTTCTAGCTGTGACAACTGTTCTTTAGCGGATACAAGGAAATCTTGCATTACAGGAATATAATTGTCATTAGGTTCTTGAGCTTTGTATGTCTTTAAGTCTGTATCAATATTGGAAACGGACTTCTTCATTTCTGCAATGTTGGCTTTTAGACTATCCTCAGAGACACGGCAAGCTCGTTCAACATGCGAGAAATCATCCAGAAACCCTTTAACAGTTTCTGGGAATTTTCGATCAAGAGAGCCAATCAAAAAATGAAGTAACCTCTGAGAA]

[+] EMBL BG930511             [GATCGACGGCGGATCAAATGCCAAGTATTTAGAAACTGTCACAAATTTATTCTGCATTCGTTTATGCATCATTTCTAGCTGTGACAACTGTTCTTTAGCGGATACAAGGAAATCTTGCATTACAGGAATATAATTGTCATTAGGTTCTTGAGCTTTGTATGTCTTTAAGTCTGTATCAATATTGGAAACGGACTTCTTCATTTCTGCAATGTTGGCTTTTAGACTATCCTCAGAGACACGGCAAGCTCGTTCAACATGCGAGAAATCATCCAGAAACCCTTTAACAGTTTCTGGGAATTTTCGATCAAGAGAGCCAATCAAAAAATGAAGTAACCTCTGAGAA]




>consensus_9799#1
GATCGACGGCGGATCAAATGCCAAGTATTTAGAAACTGTCACAAATTTATTCTGCATTCG
TTTATGCATCATTTCTAGCTGTGACAACTGTTCTTTAGCGGATACAAGGAAATCTTGCAT
TACAGGAATATAATTGTCATTAGGTTCTTGAGCTTTGTATGTCTTTAAGTCTGTATCAAT
ATTGGAAACGGACTTCTTCATTTCTGCAATGTTGGCTTTTAGACTATCCTCAGAGACACG
GCAAGCTCGTTCAACATGCGAGAAATCATCCAGAAACCCTTTAACAGTTTCTGGGAATTT
TCGATCAAGAGAGCCAATCAAAAAATGAAGTAACCTCTGAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9799#0      CATAAGTTTATGTATGAAATTTATGAAAAGACTGTACAAATAAGAAAATGAAAAAGATAC 60
consensus_9799#1      ------------------------------------------------------------
                                                                                  

consensus_9799#0      AAGTCTGAATCTGACCAGTTAGAAATCATTTATCAAACACTTTCGAAAAGTTCTTTAAGA 120
consensus_9799#1      ------------------------------------------------------------
                                                                                  

consensus_9799#0      TGACGTCCAAGGCGCTTTAGAAGTAAACTTTGAAGAGGAGTAAAAAGGAGTTGGGAACTT 180
consensus_9799#1      ------------------------------------------------------------
                                                                                  

consensus_9799#0      CATGCTACATCGACAACTGAACGAGGTAAGTCACCATAATTACGAGATCTGGCGCGCATT 240
consensus_9799#1      ------------------------------------------------------------
                                                                                  

consensus_9799#0      AACTGTCTTTGTCGAATGGCCGATGGTGAAGCAACTGATGCGAGATTAGCAGCGGCTGGG 300
consensus_9799#1      ------------------------------------------------------------
                                                                                  

consensus_9799#0      CTCACACGATTTCGATTACGCCTAACGGCTGACCTTTCACCTCCATTAGCGAAAGCAGCA 360
consensus_9799#1      ------------------------------------------------------------
                                                                                  

consensus_9799#0      CCAGACTTTAGGGCCTCCATTAAATTATCAATGACATTTCCCTCTTCCTCTGTAGGTGCC 420
consensus_9799#1      ------------------------------------------------------------
                                                                                  

consensus_9799#0      CTGGGTCCTGAGCTATTCAGAATAGCTTTATCCTCACGTTCACGCTGACGGCGTGCTTGC 480
consensus_9799#1      ------------------------------------------------------------
                                                                                  

consensus_9799#0      TCGTCCCGTGCCTTTTTCATTTTTTCTTCCAATGCATGCTTTTTCGCCAGGTCAGAAGCA 540
consensus_9799#1      ------------------------------------------------------------
                                                                                  

consensus_9799#0      GAACGTTTAAAGGCAACATGGAAGTCTTTCAAATCAGAAAATAAATTCTCCATATGGTAT 600
consensus_9799#1      ---------------------------------------------------------GAT 3
                                                                                **

consensus_9799#0      TTGTTG-GGATCAAATGCCAAGTATTTAGAAACTGTCACAAATTTATCCTGCATTCGTTT 659
consensus_9799#1      CGACGGCGGATCAAATGCCAAGTATTTAGAAACTGTCACAAATTTATTCTGCATTCGTTT 63
                           * **************************************** ************

consensus_9799#0      ATGCATCATTTCTAGCTGTGACAACTGTTCTTTAGCGGATACAAGGAAATCTTGCATTAC 719
consensus_9799#1      ATGCATCATTTCTAGCTGTGACAACTGTTCTTTAGCGGATACAAGGAAATCTTGCATTAC 123
                      ************************************************************

consensus_9799#0      AGGAATATAATTGTCATTAGGTTCTTGAGCTTTGTATGTCTTTAAGTCTGTATCAATATT 779
consensus_9799#1      AGGAATATAATTGTCATTAGGTTCTTGAGCTTTGTATGTCTTTAAGTCTGTATCAATATT 183
                      ************************************************************

consensus_9799#0      GGAAACGGACTTCTTCATTTCTGCAATGTTGGCTTTTAGACTATCCTCAGAGACACGGCA 839
consensus_9799#1      GGAAACGGACTTCTTCATTTCTGCAATGTTGGCTTTTAGACTATCCTCAGAGACACGGCA 243
                      ************************************************************

consensus_9799#0      AGCTCGTTCAACATGCGAGAAATCATCCAGAAACCCTTTAACAGTTTCTGGGAATTTTCG 899
consensus_9799#1      AGCTCGTTCAACATGCGAGAAATCATCCAGAAACCCTTTAACAGTTTCTGGGAATTTTCG 303
                      ************************************************************

consensus_9799#0      ATCAAGAGAGCCAATCAAAAAATGAAGTAACGTCTGAGAATTGGAGACATCTTTTGTCGC 959
consensus_9799#1      ATCAAGAGAGCCAATCAAAAAATGAAGTAACCTCTGAGAA-------------------- 343
                      ******************************* ********                    

consensus_9799#0      CTCTAACTTGGTTAGAAAACTAATTTCAAATCCAATCGCCTCTGCATTCCTGGACCC 1016
consensus_9799#1      ---------------------------------------------------------