These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 941 fasta sequence [AATTCGGGCACGAGGGATTATCGACCTAATACAATCAAACAAAATTCATATTGATTTACAGTAGATGTACTGAACATTCAGTGGATTATTCTCCGTATTCAAAACAACATTAATCACAATCAACAACAGTAACAATGATCATTGAACTACGTCGTTTGGGTGTTAGTCTATTATGCTTAGCAGTGGGTTTGAGTATGGCATCCCTGATAACAAACTTTTGGGATTGTGGAAATTTATTCTCATCATGTCAGAATACTACTTACAAGGAGACTGTATCAGCTGTTGCTGGTCTAATCATTTTAGGCACTGTATGCCTATTAATCATCATCTTACTGGATGCAGTTGCATTGTGTTCAGATGTATTCGCCTCACGTGCTGCTTATACAACTGTACGTTTCATCATATTATACTTGGGTGCTGCAGCTCTCTTGATCGGTGTCTTAGTGTACACATCATTAGTTGGACATCATTGGTCATACTTCTTCGCAGTGACTGGAGCTGTACTAGCAACACAAGTGGCTATATTGGCAATTATGTCGTCAAAATGTGTTACTGTTCGAACTACTACAACAACGAGAACAATTCGAGAAAGTCGGTTGGCACATCGGTAAACCAATGACCAGTTCGTTTATTTTGTTTTGAAACATTCAAACAATTGTCTTA-TACTTTCTCATTTATCTCTT-ATTATCACTCTA-TATTCTTTTGTGACTAATTGAGCTTGGGTAAT-AATAACCTGTATTGTATTGTACAATTGACACTATTC-ATGTGCAAGGTGTGTTG-TAGATATCCAATGATTGT---T--TTATTGTGTGTATTTTGCTTTACTTACTTACTCCTGTTACCCCTCATCGAGGAGCATAGGCCGCTCACCAGCATTCTCTATCCAACTCTGTTATTGTGTGTAGTTTTTCCTAATTTAAATATGATATTTATATATAAAAATT] [+] EMBL CD078041 [AATTCGGGCACGAGGGATTATCGACCTAATACAATCAAACAAAATTCATATTGATTTACAGTAGATGTACTGAACATTCAGTGGATTATTCTCCGTATTCAAAACAACATTAATCACAATCAACAACAGTAACAATGATCATTGAACTACGTCGTTTGGGTGTTAGTCTATTATGCTTAGCAGTGGGTTTGAGTATGGCATCCCTGATAACAAACTTTTGGGATTGTGGAAATTTATTCTCATCATGT ] [+] EMBL CD079028 [ AAAATTCATATCGATTTACAGTAGATGTACTGAACATTCAGTGGATTATTCTCCGTATTCAAAACAACATTAATCACAATCAACAACAGTAACAATGATCATTGAACTACGTCGTTTGGGTGTTAGTCTATTATGCTTAGCAGTGGGTTTGAGTATGGCATCCCTGATAACAAACTTTTGGGATTGTGGAAATTTATTCTCATCATGTCAGAATACTACTTACAAGGAGACTGTATCAGCTGTTGCTGGTCTAATCATTTTAGGCACTGTATGCCTATTAATCATCATCTTACTGGATGCAGTTGCATTGTGTTCAGATGTATTCGCCTCACGTGCTGCTTATACAACTGTACGTTTCATCATATTATACTTGGGTGCTGCAGCTCTCTTGATCGGTGTCTTAGTGTACACATCATTAGTTGGACATCATTGGTCATACTTCTTCGCAGTGACTGGAGCTGTACTAGCAACACAAGTGGCTATATTGGCAATTATGTCGTCAAAATGTGTTACTGTTCGAACTACTACAACAACGAGAACAATTCGAGAAAGTCGGTTGGCACATCGGTAAACCAATGACCAGTTCGTTTATTTTGTTTTG ] [+] EMBL CD081974 [ AGTAGATGTACTGAACATTCAGTGGATTATTCTCCGTATTCAAAACAACATTAATCACAATCAACAACAGTAACAATGATCATTGAACTACGTCGTTTGGGTGTTAGTCTATTATGCTTAGCAGTGGGTTTGAGTATGGCATCCCTGATAACAAACTTTTGGGATTGTGGAAATTTATTCTCATCATGTCAGAATACTACTTACAAGGAGACTGTATCAGCTGTTGCTGGTCTAATCATTTTAGGCACTGTATGCCTATTAATCATCATCTTACTGGATGCAGTTGCATTGTGTTCAGATGTATTCGCCTCACGTGCTGCTTATACAACTGTACGTTTCATCATATTATACTTGGGTGCTGCAGCTCTCTTGATCGGTGTCTTAGTGTACACATCATTAGTTGGACATCATTGGTCATACTTCTTCGCAGTGACTGGAGCTGTACTAGCAACACAAGTGGCTATATTGGCAATTATGTCGTCAAAATGTGTTACTGTTCGAACTACTACAACAACGAGAACAATTCGAGAAAGTCGGTTGGCACATCGGTAAACCAATGACCAGTTCGTTTATTTTGTTTTGAAACATTCAAACAATTGNCTTA TACTTTCTCATTTATCTCTT ATTATCACTCTA TATTCTTTTGTGACTAATTGAGCTTGGGTAAT AATAACCTGTATTATATTGTACAATTGACACTATTC ATGTGCAAGGTGTGGTG TAGATATCC ] [+] EMBL CD079271 [ ACGTCGTTTGGGTGTTAGTCTATTATGCTTAGCAGTGGGTTTGAGTATGGCATCCCTGATAACAAACTTTTGGGATTGTGGAAATTTATTCTCATCATGTCAGAATACTACTTACAAGGAGACTGTATCAGCTGTTGCTGGTCTAATCATTTTAGGCACTGTATGCCTATTAATCATCATCTTACTGGATGCAGTTGCATTGTGTTCAGATGTATTCGCCTCACGTGCTGCTTATACAACTGTACGTTTCATCATATTATACTTGGGTGCTGCAGCTCTCTTGATCGGTGTCTTAGTGTACACATCATTAGTTGGACATCATTGGTCATACTTCTTCGCAGTGACTGGAGCTGTACTAGCAACACAAGTGGCTATATTGGCAATTATGTCGTCAAAATGTGTTACTGTTCGAACTACTACAACAACGAGAACAATTCGAGAAAGTCGGTTGGCACATCGGTAAACCAATGACCAGTTCGTTTATTTTGTTTTGAAACATTCAAACAATTGGCTTA TACTTTCTCATTTATCTCTT ATTATCACTCTA TATTCTTTTGNGACTAATTGAGCTTGGGTAAT An ] [-] EMBL CD184412 [ TGGTATAATCATTTTAGGCACGGTATGCGTATTAATCATCATCTTACTGGATGCAGATGCATTGTGTTCAGATGTATTCGCCTCACGTGCTGCTTATACAACTGTACGTTTCATCATATTATACTTGGGTGCTGCAGCTCTCTTGATCGGTGTCTTAGTGTACACATCATTAGTTGGACGTCATTGGTCATACTTCTTCGCAGTGACTGGAGCTGTACTAGCAACACAAGTGGCTATATTGGCAATTATGTCGTCAAAATGTGTTACTGTTCGAACTACTACAACAACGAGAACAATTCGAGA ] [+] EMBL CD141661 [ GGATGCAGTTGCATTGTGTTCAGATGTATTCGCCTCACGTGCTGCTTATACAACTGTACGTTTCATCATATTATACTTGGGTGCTGCAGCTCTCTTGATCGGTGTCTTAGTGTACACATCATTAGTTGGACATCATTGGTCATACTTCTTCGCAGTGACTGGAGCTGTACTAGCAACACAAGTGGCTATATTGGCAATTATGTCGTCAAAATGTGTTACTGTTCGAACTACTACAACAACGAGAACAATTCGAGANAGTCGGTTGGCACAT ] [-] EMBL CD114947 [ TGCAGCTCTCTTGATCGGTGTCTTAGTGTACACATCATTAGTTGGACATCATTGGTCATACTTCTTCGCAGTGACTGGAGCTGTACTAGCAACACAAGTGGCTATATTGGCAATTATGTCGTCAAAATGTGTTACTGTTCGAACTACTACAACAACGAGAACAATTCGAGAAAGTCGGTTGGCACATCGGTAAACCAATGACCAGTTCGTTTATTTTGTTTTGAAACATTCAAACAATTGTCTTA TACTTTCTCATTTATCTCTT ATTATCACTCTA TATTCTTTTGTGACTAATTGAGCTTGGGTAATAAATAACCTGTATTGTATTGTACAATTGACACTATTCAATGTGCAAGGTGTGTTGTTAGATATCCAATGATTGT T TTATTGTGTGTATTTTGCTTTACTTACTTACTCCTGTTACCCCTCATCGAGGAGCATAGGCCGCTCACCAGCATTC ] [-] EMBL CD073479 [ ATCATTAGTTGGACATCATTGGTCATACTTCTTCGCAGTGACTGGAGCTGTACTAGCAACACAAGTGGCTATATTGGCAATTATGTCGTCAAAATGTGTTACTGTTCGAACTACTACAACAACGAGAACAATTCGAGAAAGTCGGTTGGCACATCGGTAAACCAATGACCAGTTCGTTTATTTTGTTTTGAAACATTCAAACAATTGTCTTA TACTTTCTCATTTATCTCTT ATTATCACTCTA TATTCTTTTGTGACTAATTGAGCTTGGGTAATAAATAACCTGTATTGTATTGTACAATTGACAGTATTCAATGTGCAAGGTGTGTTGTTAGATATCCAATGATTGTGTGTACTTATTGTGTGTACTTTGCTTTACTTACTTACTCCTGTTACCCCTCATCGAGGAGCATAGGCCGCTCACCAGCATTTTCTATCCAACTCTGTTATTGTGTGTAGTTTTTCCTAATTTAAATATGATATTTATATATAAAAATT] [+] EMBL CD177678 [ CAATTCGAGAATGTCGGTTGGCACATCGGTAAACCAATGACCAGTTCGTTTATTTTGTTTTGAAGCATTCAAACAATTGTCTTACTACTTTCTCATTTATCTCTTAATTATCACTCTACTATTCTTTTGTGACTAAatt ] consensusID : consensus_9805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [ATGAAAAAGTGCGTGATGAGCGAAGCTACACTACTTGGAATGTTGAAGATTGATCCATTCACTTATGGTTTAGTCATCAAACAGGAGGTTGAACAAGGGTGCGAGGATGATCCTGCTGTACTAGATATAACCCCCGAAATGATTTCCCAAAAATTTGCTGGTATCGTCCAGAATATTGCTTGATTAAGCTTGGCTGTGGACTATACAACACTTGCTAGCATCCCACATGTGCTCGCACACGGGTTCAAAAACTTGCTGGCTTTGTCTCTAATGACCGATTACTCGTTCAAAGAGGCCGAACAGATTAAAGAGTTCCTAGCAGATCCTTCTAAATATGCTACAGTCGCTCCATGTGATGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAGCTCTTAGCATACCGACAAAAATTGCTAGGGGAGCAATTGAAATTATTAATGACGTCCATCTGGTGCGCAAAGATGAAAAAGTCGCGATGAGCGAAGCTACACTACTTGGTATGTTGAAAATTCATCCATTCACTTATGGTTTAGTCATCAGACAGGTGTTTGAACAAGGTTGCGTGTATGATCCTGCTGCACT] [+] EMBL CD096451 [ATGAAAAAGTGCGTGATGAGCGAAGCTACACTACTTGGAATGTTGAAGATTGATCCATTCACTTATGGTTTAGTCATCAAACAGGAGGTTGAACAAGGGTGCGAGGATGATCCTGCTGTACTAGATATAACCCCCGAAATGATTTCCCAAAAATTTGCTGGTATCGTCCAGAATATTGCTTGATTAAGCTTGGCTGTGGACTATACAACACTTGCTAGCATCCCACATGTGCTCGCACACGGGTTCAAAAACTTGCTGGCTTTGTCTCTAATGACCGATTACTCGTTCAAAGAGGCCGAACAGATTAAAGAGTTCCTAGCAGATCCTTCTAAATATGCTACAGTCGCTCCATGTGATGTCATCGTGCCAGCGCAAAACACTGGTCTAGGTCCAGAGAAGACAGCTTTTTTCCAAGCTCTTAGCATACCGACAAAAATTGCTAGGGGAGCAATTGAAATTATTAATGACGTCCATCTGGTGCGCAAAGATGAAAAAGTCGCGATGAGCGAAGCTACACTACTTGGTATGTTGAAAATTCATCCATTCACTTATGGTTTAGTCATCAGACAGGTGTTTGAACAAGGTTGCGTGTATGATCCTGCTGCACT] consensusID : consensus_9805#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 231 fasta sequence [CTAGTGATTTGACAGGAGGTGTTGCAAACCCACTCTTAAACAAGCAATATTCTGGACGATAGCAGCAAATTTTTCGAAAATCATTTCGGGGGTTATATCTAGCACAGCAGGATCATACACGCAACCTTGTTCAAACACCTGTTTGATGACTAAACCATAAGTGAATGGATGAATTTTCAACATTCCAAGTAGTGTAGCTTCGCTCATCCCGACTTTTTCATCTTTGCAACA] [+] EMBL CD177837 [CTAGTGATTTGACAGGAGGTGTTGCAAACCCACTCTTAAACAAGCAATATTCTGGACGATAGCAGCAAATTTTTCGAAAATCATTTCGGGGGTTATATCTAGCACAGCAGGATCATACACGCAACCTTGTTCAAACACCTGTTTGATGACTAAACCATAAGTGAATGGATGAATTTTCAACATTCCAAGTAGTGTAGCTTCGCTCATCCCGACTTTTTCATCTTTGCAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9805#0 AATTCGGGCACGAGGGATTATCGACCTAATACAATCAAACAAAATTCATATTGATTTACA 60 consensus_9805#2 ------------------------------------------------------------ consensus_9805#1 ------------------------------------------------------------ consensus_9805#0 GTAGATGTACTGAACATTCAGTGGATTATTCTCCGTATTCAAAACAACATTAATCACAAT 120 consensus_9805#2 ------------------------------------------------------------ consensus_9805#1 ------------------------------------------------------------ consensus_9805#0 CAACAACAGTAACAATGATCATTGAACTACGTCGTTTGGGTGTTAGTCTATTATGCTTAG 180 consensus_9805#2 ------------------------------------------------------------ consensus_9805#1 ------------------------------------------------------------ consensus_9805#0 CAGTGGGTTTGAGTATGGCATCCCTGATAACAAACTTTTGGGATTGTGGAAATTTATTCT 240 consensus_9805#2 ------------------------------------------------------------ consensus_9805#1 ---------------------------------------------ATGAAAAAGTGCGTG 15 consensus_9805#0 CATCATGTCAGAATACTACTTACAA----GGAGACTGTATCAGCTGTTGCTGGTCTAATC 296 consensus_9805#2 ------------------------------------------------------------ consensus_9805#1 ATGAGCGAAGCTACACTACTTGGAATGTTGAAGATTGATCCATTCACTTATGGTTTAGTC 75 consensus_9805#0 ATTTTAGGCACTGTATGCCTATTAATCATCATCTTACTGGATGCAGTTGCATTGTGTTCA 356 consensus_9805#2 ------------------------------------------------------------ consensus_9805#1 ATCAAACAGGAGGTTGAACAAGGGTGCGAGGATGATCCTGCTGTACTAGATATAACCCCC 135 consensus_9805#0 GATGTATTCGCCTCACGTGCTGCTTATACAACTGTACGTTTCATCATATTATACTTGGGT 416 consensus_9805#2 ------------------------------------------------------------ consensus_9805#1 GAAATGATTTCCCAAAAATTTGCTGGTATCGTCCAGAATATTGCTTGATTAAGCTTGGCT 195 consensus_9805#0 GCTGCAGCTCTCTTGATCGGTGTCTTAGTGTACACATCATTAGTTGGACATCATTGGTCA 476 consensus_9805#2 ------------------------------------------------------------ consensus_9805#1 GTGGACTATACAACACTTGCTAGCATCCCACATGTGCTCGCACACGGGTTCAAAAACTTG 255 consensus_9805#0 TACTTCTTCGCAGTGACTGGAGCTGTACTAGCAACACAAGTGGCTATATTGGCAATTATG 536 consensus_9805#2 ----------------------------------------------------CTAGTGAT 8 consensus_9805#1 CTGGCTTTGTCTCTAAT---GACCGATTACTCGTTCAAAGAGGCCGAACAGATTAAAGAG 312 * consensus_9805#0 TCGTCAAAATGTGTTACTGTTCGAACTACTACAACAACGAGAACAATTCGAGAAAGTCGG 596 consensus_9805#2 TTGACAGGAGGTGTTGC----AAACCCACTCTTA-AACAAGCAATATTCTGGACGATAG- 62 consensus_9805#1 TTCCTAGCAGATCCTTCTAAATATGCTACAGTCGCTCCATGTGATGTCATCG-TGCCAGC 371 * * * * * * * ** * * * * * consensus_9805#0 TTGGCACATCGGTAAACCAATGACCAGTTCGTTTATTTTGTTTTGAAACATTCAAACAAT 656 consensus_9805#2 -CAGCAAATTTTT----CGAAAATCATTTCGGGGGTTATATCTAGCA-CAGCAGGATCAT 116 consensus_9805#1 GCAAAACACTGGT----CTAGGTCCAGAGAAGACAGCTTTTTTCCAAGCTCTTAGCATAC 427 * * * * * ** * * * * * * consensus_9805#0 TGTCTTATACTTTCTCATTTATCTCTTATTATCACTCTATATTCTTTTGTGACTAATTGA 716 consensus_9805#2 ACACGCAACCTTGTTCAAACACCTGTT-TGATGACTA---AACCATAAGTGAATGGATGA 172 consensus_9805#1 CGACA-AAAATTGCTAGGGGAGCAATTGAAATTATTAATGACGTCCATCTGGTGCGCAAA 486 * * ** * * * ** ** * * * ** * consensus_9805#0 GCTTGGGTAATAATAACCTGTATTGTATTGTACAATTGACACTATTCATGTGCAAGGTGT 776 consensus_9805#2 ATTTTCAACATTCCAAGTAGTGTAGCTTCGCTCATCCCGACTTTTTCATCTTTGCAACA- 231 consensus_9805#1 GATGAAAAAGTCGCGATGAGCGAAGCTACACT--ACTTGGTATGTTGAAAATTCATCCAT 544 * * * * * * ** * consensus_9805#0 GTTGTAGATATCCAATGATTGTTTTATTGTGTGTATTTTGCTTTACTTACTTACTCCTGT 836 consensus_9805#2 ------------------------------------------------------------ consensus_9805#1 TCACTTATGGTTTAGTCATCAGACAGGTGTTTGAACAAGGTTGCGTGTATGATCCTGCTG 604 consensus_9805#0 TACCCCTCATCGAGGAGCATAGGCCGCTCACCAGCATTCTCTATCCAACTCTGTTATTGT 896 consensus_9805#2 ------------------------------------------------------------ consensus_9805#1 CACT-------------------------------------------------------- 608 consensus_9805#0 GTGTAGTTTTTCCTAATTTAAATATGATATTTATATATAAAAATT 941 consensus_9805#2 --------------------------------------------- consensus_9805#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||