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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9807#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1120 fasta sequence
[CATCACCTCCCTTTTCACCATTTTCACCTGGATCCCCTATTTCTCCACGCAGACCAGCATCACCATCTTTACACAAAGGGCAAACAGTTAACGGTTCACCTTTTGGACCTGGAGGTCCAGGTTCACCGTGTTTTCCGGGTTCTCCATCACTTCCATCATCACCAGGTTCACCACGAGGACCAACTGGACCGACATTACTATCTCCACCAAATCCTTTTTCTCCAGGATCACCTTCTT-CACCAGATTCACCTTTAATACCACGTAAACCTTCCACACCAACCTCGCCAATTTCACCTATATGACCGAAACCATCATCTCCAGGTAACCCTCTTTGGCCTGGTTGTCCTGGATCTCCATCAACTCCAGGTTGTCCCTGTGCTCCATTTTTTCCATACCAACCCTTAACACCCACGGGACCTTGTGGACCAGGTTCACAAATTTTACCTTGGCTTCCTCTTACCCCTTTTAGACCTTCATCGCCTGGAACACCTTTTTCTCCTTGATCACCTGGTAAGCCAGGTTCCCCCTGAGTTCCCTTATCACCAGGATGACCTGGGAGACCTTTTTCACCTTTCGGAAAAAACTCGACTGGACAAGTAGCTTTCCCAGGGATTCCAGCTGGACCTGGATCACCTTGTAAACCATCACGACCATGTGGACCTCGATCACCTTTTCCACCGATTGCACCTTCTGGTCCAGGTGGACCATCAGAACCCAAATTACCTGCTTGTCCAATCGGTCCCACATCACCGCCTTCTCCAGGATCACCATCTAGTCCGGGTTCACCAGATTCACCTTTTTCACCAATTGATCCTTCTTCACCTTGTAGACCCACATCACCTTCATCTCCTGGCTCTCCACTGTCACCTTTAGGTCCTGGAGGACCTATGTCTCCAGCTTGACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGTCCATATCTTCACATGGTTGACCATCTTGTCCTCGAGGACCTGGTTCACCACGATCTCCGGGAATTATATTCGTATAATTGTATACTCCACTTTCACCTTTAGGACCGATGTCTCCCATCAAACCTACGGCTCCTGATTCTCCTTGAGGTCCACGTGGACCAGGAAGTCCATCTTC]
[-] EMBL CD064361 [CATCACCTCCCTTTTCACCATTTTCACCTGGATCCCCTATTTCTCCACGCAGACCAGCATCACCATCTTTACACAAAGGGCAAACAGTTAACGGTTCACCTTTTGGACCTGGAGGTCCAGGTTCACCGTGTTTTCCGGGTTCTCCATCACTTCCATCATCACCAGGTTCACCACGAGGACCAACTGGACCGACATTACTATCTCCACCAAATCCTTTTTCTCCAGGATCACCTTCTT CACCAGATTCACCTTTAATACCACGTAAACCTTCCACACCAACCTCGCCAATTTCACCTATATGACCGAAACCATCATCTCCAGGTAACCCTCTTTGGCCTGGTTGTCCTGGATCTCCATCAA TCCAGGTTGTCC ]
[-] EMBL CD170882 [ CAACTGGACCGACATTACTATCTCCACCAAATCCTTTTTCTCCAGGATCACCTTCTT CACCAGATTCACCTTTAATACCACGTAAACCTTCCACACCAACCTCGCCAATTTCACCTATATGACCGAAACCATCATCTCCAGGTAACCCTCTTTGGCCTGGTTGTCCTGGATCTCCATCAACTCCAGGTTGTCCCTGTGCTCCATTTTTTCCATACCAACCCTTAACACCCACGGGACCTTGTGGACCAGGTTCACAAATTTTACCTTGGCTTCCTCTTACCCCTTTTAGACCTTCATCGCCTGGAACACCTTTTTCTCCTTGATCACCTGGTAAGCCAGGTTCCCCCTGAGTTCCCTTA ]
[-] EMBL CD180795 [ ccaccagACCTTCTTCCACCAGATTCACCTTTAATACCACGTAAACCTTCCACACCAACCTCGCCAATTTCACCTATATGACCGAAACCATCATCTCCAGGTAACCCTCTTTGGCCTGGTTGTCCTGGATCTCCATCAACTCCAGGTTGTCCCTGTGCTCCATTTTTTCCATACCAACCCTTAACAC ]
[+] EMBL CD170879 [ GCCTGGTTGTCCTGGATCTCCATCAACTCCAGGTTGTCCCTGTGCTCCATTTTTTCCATACCAACCCTTAACACCCACGGGACCTTGTGGACCAGGTTCACAAATTTTACCTTGGCTTCCTCTTACCCCTTTTAGACCTTCATCGCCTGGAACACCTTTTTCTCCTTGATCACCTGGTAAGCCAGGTCCCCCCTGAGTTCCCTT ]
[+] EMBL CD145329 [ ccGACCGTCATCGCCTGGAACACCTTTTTCTCCTTGATCACCTGGTAAGCCAGGTTCCCCCTGAGTTCCCTTATCACCAGGATGACCTGGGAGACCTTTTTCACCTTTCGGAAAAAACTCGACTGGACAAGTAGCTTTCCCAGGGATTCCAGCTGGACCTGGATCACCTTGTAAACCATCACGACCATGTGGACCTCGATCACCTTTTCCACCGATTGCACCTTCTGGTCCAGGTGGACCATCAGAACCCAAATTACCTGCTTGTCCAATCGGTCCCACATCACCGCCTTCTCCAGGATCACCATCTAGTCCGGGTTCACCAGATTCACCTTTTTCACCAATTGATCCTTCTTCACCTTGTAGACCCACATCACCTTCATCTCCTGGCTCTCCACTGTCACCTTTAGGTCCTGGAGGACCTATGTCTCCAGCTTGACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGT ]
[+] EMBL CD132368 [ GGATCACCATCTAGTCCGGGTTCACCAGATTCACCTTTTTCACCAATTGATCCTTCTTCACCTTGTAGACCCACATCACCTTCATCTCCTGGCTCTCCACTGTCACCTTTAGGTCCTGGAGGACCTATGTCTCCAGCTTGACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGTCCATATCTTCACATGGTTGACCATCTTGTCCTCGAGGACCTGGTTCACCACGATCTCCGGGAATTATATTCGTATAATTGTATACTCCACTTTCACCTTTAGGACCGATGTCTCCCATCAAACCTACGGCTCCTGATTCTCCTTGAGGTCCACGTGGACCAGGAAGTCCATCTTC]
[+] EMBL CD072597 [ CACCTTCATCTCCTGGCTCTCCACTGTCACCTTTAGGTCCTGGAGGACCTATGTCTCCAGCTTGACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGTCCATATCTTCACATGGTTGACCATCTTGTCCTCGAGGACCTGGTT ]
[+] EMBL CD072598 [ CACCTTCATCTCCTGGCTCTCCACTGTCACCTCTAGGTCCTGGAGGACCTATGTCTCCAGCTTGACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGTCCATATCTTCACATGGTTGACCATCTTGTCCTTGAGGACCTGGTT ]
[+] EMBL CD072644 [ CACCTTCATCTCCT GCTCTCCACTGTCACCTTTAGGTCCTGGAGGACCTATGTCTCCAGCTTGACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGTCCATATCTTCACATGGTTGACCATCTTGTCCTCGAGGACCTGGTT ]
consensusID : consensus_9807#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 414 fasta sequence
[ATCGTCACCGTCATCTCCAACTTCACCAATTGGTCCCTGTTCACCATCTGTACCTTGTTGTCCTTTAAGACCCTCATCACCAATAGGACCAGGTTCTCCTTCATCGCCTCTATCGCCAATATCACCAATGCTACCTTCATGGCCTTCATCACCTTCATCGCCTGATATAACATCTTCTACAACCCGAGACACAACAGCAGATTCTCCAGGATCACCGGGGTCACCACTAAAACCATCTTCACCAATACGACCTTTTTCACCTTTGGTTCCCGGTAGACCGATTAAACCATCTTCACCTAGCCGGCCAGTATCACCTCTATCACCTGGCATACCATCACCTCCCTTTTCACCATTTTCACCTGGATCCCCTATTTCTCCAGGTCCAAAAGGTGAACCGTTAACTGTTTGCCCTTT]
[+] EMBL CD128819 [ATCGTCACCGTCATCTCCAACTTCACCAATTGGTCCCTGTTCACCATCTGTACCTTGTTGTCCTTTAAGACCCTCATCACCAATAGGACCAGGTTCTCCTTCATCGCCTCTATCGCCAATATCACCAATGCTACCTTCATGGCCTTCATCACCTTCATCGCCTGATATAACATCTTCTACAACCCGAGACACAACAGCAGATTCTCCAGGATCACCGGGGTCACCACTAAAACCATCTTCACCAATACGACCTTTTTCACCTTTGGTTCCCGGTAGACCGATTAAACCATCTTCACCTAGCCGGCCAGTATCACCTCTATCACCTGGCATACCATCACCTCCCTTTTCACCATTTTCACCTGGATCCCCTATTTCTCCAGGTCCAAAAGGTGAACCGTTAACTGTTTGCCCTTT]
[-] EMBL CD068794 [ CCAATATCACCAATGCTACCTTCATGGCCTTCATCACCTTCATCGCCTGATATAACATCTTCTACAACCCGAGACACAACAGCAGATTCTCCAGGATCACCGGGGTCACCACTAAAACCATCTTCACCAATACGACCTTTTTCACC TTGGTTCCCGGTAGACCGATTAAACCATCTTCACCTAGggtacc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9807#0 CATCACCTCCCTTTTCACCATTTTCACCTGGATCCCCTATTTCTCCACGCAGACCAGCAT 60
consensus_9807#1 ------------------------------------------------------------
consensus_9807#0 CACCATCTTTACACAAAGGGCAAACAGTTAACGGTTCACCTTTTGGACCTGGAGGTCCAG 120
consensus_9807#1 ------------------------------------------------------------
consensus_9807#0 GTTCACCGTGTTTTCCGGGTTCTCCATCACTTCCATCATCACCAGGTTCACCACGAGGAC 180
consensus_9807#1 ------------------------------------------------------------
consensus_9807#0 CAACTGGACCGACATTACTATCTCCACCAAATCCTTTTTCTCCAGGATCACCTTCTTCAC 240
consensus_9807#1 ------------------------------------------------------------
consensus_9807#0 CAGATTCACCTTTAATACCACGTAAACCTTCCACACCAACCTCGCCAATTTCACCTATAT 300
consensus_9807#1 ------------------------------------------------------------
consensus_9807#0 GACCGAAACCATCATCTCCAGGTAACCCTCTTTGGCCTGGTTGTCCTGGATCTCCATCAA 360
consensus_9807#1 ------------------------------------------------------------
consensus_9807#0 CTCCAGGTTGTCCCTGTGCTCCATTTTTTCCATACCAACCCTTAACACCCACGGGACCTT 420
consensus_9807#1 -------------------------------ATCGTCACCGTCATCTCCAACTTCACCAA 29
** *** * * * ** ** ***
consensus_9807#0 GTGGACCAGGTTCACAAATTTTACCTTGGCTTCCTCTTACCCCTTTTAGACCTTCATCGC 480
consensus_9807#1 TTGGTCCCTGTTCACCATCTGTACCTTGTTGTCCT---------TTAAGACCCTCATCAC 80
*** ** ****** * * ******* **** ** ***** ***** *
consensus_9807#0 CTGGAACACCTTTTTCTCCTTGATCACCTGGTAAGCCAGGTTCCCCCTGAGTTCCCTTAT 540
consensus_9807#1 CAATAGGACCAGGTTCTCCTTCATCGCCTCTATCGCCAATATCACCAATGCTACCTTCAT 140
* * *** ******** *** *** **** ** ** * ** * **
consensus_9807#0 CACCAGGATGACCTGGGAGACCTTTTTCACCTTTCGGAAAAAACTCGACTGGACAAGTAG 600
consensus_9807#1 GGCCTTCATCACCTTCATCGCCTGATATAACATCTTCTACAACCCGAGACACAACAGCAG 200
** ** **** *** * * * * * ** * * ** **
consensus_9807#0 CTTTCCCAGGGATTCCAGCTGGACCTGGATCACCTTGTAAACCATCACGACCATGTGGAC 660
consensus_9807#1 ATTCTCCAGGATCACCGGGGTCACCACTAAAACCATCTTCACCAATACGACCTTTTTCAC 260
** ***** ** * *** * *** * * **** ****** * * **
consensus_9807#0 CTCGATCACCTTTTCCACCGATTGCACCTTCTGGTCCAGGTGGACCATCAGAACCCAAAT 720
consensus_9807#1 CTTTGGTTCCCGGTAGACCGATTAAACCATCTTCACCTAGCCGGCCAGTATCACCTCTAT 320
** ** * ******* *** *** ** * * *** * *** **
consensus_9807#0 TACCTGCTTGTCCAATCGGTCCCACATCACCGCCTTCTCCAGGATCACCATCTAGTCCGG 780
consensus_9807#1 CACCTGGCATACCATCACCTCCCTTTTCACCATTTTCACCTGGATCCCCTATTTCTCCAG 380
***** *** **** ***** *** ** ***** ** * *** *
consensus_9807#0 GTTCACCAGATTCACCTTTTTCACCAATTGATCCTTCTTCACCTTGTAGACCCACATCAC 840
consensus_9807#1 GTCCAAAAGGTGAACCGTTA--ACTGTTTGCCCTTT------------------------ 414
** ** ** * *** ** ** *** * **
consensus_9807#0 CTTCATCTCCTGGCTCTCCACTGTCACCTTTAGGTCCTGGAGGACCTATGTCTCCAGCTT 900
consensus_9807#1 ------------------------------------------------------------
consensus_9807#0 GACCTCTTGTAAAACTGATAAGTTCTTCTTCAGTATATTCGCGGTCCATATCTTCACATG 960
consensus_9807#1 ------------------------------------------------------------
consensus_9807#0 GTTGACCATCTTGTCCTCGAGGACCTGGTTCACCACGATCTCCGGGAATTATATTCGTAT 1020
consensus_9807#1 ------------------------------------------------------------
consensus_9807#0 AATTGTATACTCCACTTTCACCTTTAGGACCGATGTCTCCCATCAAACCTACGGCTCCTG 1080
consensus_9807#1 ------------------------------------------------------------
consensus_9807#0 ATTCTCCTTGAGGTCCACGTGGACCAGGAAGTCCATCTTC 1120
consensus_9807#1 ----------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||