These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9810#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1267 fasta sequence [TGTGTGCGTTACTGTACTTAGTGTTATTAAGGATGAAGTCAATCTCCAGAGTACTCAGAAGTCATCTTGTCTCAAATCTCACTGATATTTTTCTTTGTTAACGCCCTATGTTTTCTTTCTGAGCATGCCATGCAATTTGAGACCGGAGTTTGGTCATGTGAAAAGCATACTGTTGTGTCTCCTAAAGAGGAAGCGAATTATGAGTGTGGAGTTGGTCACCTTCCAGCATCATCTTCGACGAATGAAAATCCACCTCCCGTCCCACCAAAAGCCTCGAAACATATTCCTCCCCTACCTCCAAAACACATAACCCGTCCAGTTCGACAGGTAAAACATAAATGCATAAAATGTGAACCAACTGTCAGTTTGCAAAACCTAAATTTTCCACCTATTGGTCACTTACCAGACGTTTGTGCGGTATGCAGGCGAAGCGGTTTACATCCACACTCTACATGTGACGTTGAGTCAATCGACAAACCTCAGAA-GGATCCCATCGACCCTCTACCC-GATCACGA-GGATGTAAAGTACAAAAAAT-GTCTTGAATGTCCCCAAACACCTAGTAGCAATAATATAAAGTCCAGTACTCGTCACATCAAAACAGTGAAACAAATCGACCGGGTAAAATCCCATCTGATAGGAATGGTCATTCCTGTTTGTTTACGTTCGATAAAAATATTTCTGATCCGAAATGCACTCAGCCATTCACTTGCAAACGGTTCACAAAACGACATATTTGTCAGGGAGTCTCGAAACACCAAGAACCTAACCTATGCGAGCTCGGAAGGGATTCGAGTTCGACATCTGACTTACCATCATCAAACTGTACTTGCTCTGGAAACGTATGTGGTCTTCATGGTGGTAGTAAACTAGACTCTAGCTACACGCAAAACTCAAGATGCTTTTCCTCAGAATATCGTGGACTCAATTTAATTTCAGATCATTCTACGGGATATAAGGTTTCTCGGTATCAAGAGCAAGGTGATACAAACAAAACAAGGTGCGGTAGTTTACAGTGGATATCTGACACTTTCCAACGTATATTTCATGCTTCTAAGAGCTTGAAATCTAAAACAAATTTTCTTCACCCACCAGGTGATTCACTTGTAAATGTAAAAAATNTACCTCAGTTAAATGAAGATAAATTTTATAGGCGACTGAAACCACTTGTTCATAAGAAGGATCGCGAATTGAAGAAGGATGTNTTCGATCAGAAGTTTGGGTGTCGTTTCGTACAACACAACGTTCTTTCAGCCATAATAGTTCTCTT] [-] EMBL CD155744 [TGTGTGCGTTACTGTACTTAGTGTTATTAAGGATGAAGTCAATCTCCAGAGTACTCAGAAGTCATCTTGTCTCAAATCTCACTGATATTTTTCTTTGTTAACGCCCTATGTTTTCTTTCTGAGCATGCCATGCAATTTGAGACCGGAGTTTGGTCATGTGAAAAGCATACTGTTGTGTCTCCTAAAGAGGAAGCGAATTATGAGTGTGGAGTTGGTCACCTTCCAGCATCATCTTCGACGAATGAAAATCCACCTCCCGTCCCACCAAAAGCCTCGAAACATATTC ] [-] EMBL CD194848 [ CATGCCATGCAATTTGAGACCGGAGTTTGGTCATGTGAAAAGCATACTGTTGTGTCTCCTAAAGAGGAAGCGAATTATGAGTGTGGAGTTGGTCACCTTCCAGCATCATCTTCGACGAATGAAAATCCACCTCCCGTCCCACCAAAAGCCTCGAAACATATTCCTCCCCTACCTCCAAAACACATAACCCGTCCAGTTCGACAGGTAAAACATAAATGCATAAAATGTGAACCAACTGTCAGTTTGCAAAACCTAAATTTTCCACCTATTGGTCACTTACCAGACGTTTGTGCGGTATGCAGGCGAAGCGGTTTACATCCACACTCTACATGTGACGTTGAGTCAATCGACAAACCTCAGAA GGATCCAATCGACCCTCTACCC GATCACGA GGATGTAAAGTACAAAAAAT GTCTTGAATGTCCCCAAACACCTAGTAGCAATAATATAAAGTCCAGTACTCGTCACATCAAAACAGTGAAACAAATCGACCGGGTAAAATCCCATCTGATAGGAATGGTCATTCCTGTTTGTTTACGTTCGATAAAAATATTTCTGAT ] [+] EMBL CD182917 [ AAAAGCATACTGTTGTGTCTCCTAAAGAGGAAGCGAATTATGAGTGTGGAATTGGTCACCTTCCAGCATCATCTTCGACGAATGAAAATCCACCTCCCGTCCCACCAAAAGCCTCGAAACATATTCCTCCCCTACCTCCAAAACACATAACCCGTCCAGTTCGACAGGTAAAACATAAATGCATAAAATGTGAACCAACTGTCAGTTTGCAAAACCTAAATTTTCCACCTATTGGTCACTTACCAGACGTTTGTGCGGTATGCAGGCGAAGCGG TTACATCCACACTCTACATGTGACGTTGAGTCAATCGANCAACCTCAGAA GGATCCCATCGACCCTCTACCC GATCACGA GGATGTAANGTACCAAAAATGGTCTTGAATGTCCCCAANCACCTAGTt ] [+] EMBL CD183016 [ AAAAGCATCCTGTTGTGTCTCCTAAAGAGGAAGCGAATTATGAGTGTGGAGTTGGTCACCTTCCAGCATCATCTTCGACGAATGAAAATCCACCTCCCGTCCCACCAAAAGCCTCGAAACATATTCCTCCCCTACCTCCAAAACACATAACCCGTCCAGTTCGACAGGTAAAACATAAATGCATAAAATGTGAACCAACTGTCAGTTCGCAAAACCTAAATTTTCCACCTATTGGTCACTTACCAGACGTTTGTGCGGTATGCAGGCGAAGCGGTTTACATCCACACTCTACATGTGACGTTGAGTCAATCGACAAACCTCAGAA GGATCCCATCGACCCTCTACCCNGATCACGA GATGTAAAGTAC AAAAAT GTCTTGAATGTTCCCAAACACCTAGTA ] [+] EMBL CD183197 [ AAAAGCATACTGTTGTGCCTCCTAAAGAGGAAGCGAATTATGAGTGTGGAGTTGGTCACCTTCCAGCATCATCTTCGACGAATGAAAATCCACCTCCCGTCCCACCAAAAGCCTCGAAACATATTCCTCCCCTACCTCCAAAACACATAACCCGTCCAGTTCGACAGGTAAAACATAAATGCATAAAATGTGAACCAACTGTCAGTTTGCAAAACCTAAATTTTCCACCTATTGGTCACTTACCAGACGTTTGTGCGGTATGCAGGTGAAGCGGTTTACATCCACACTCTACATGTGACGTTGAGTCAATCGANCAACCTCAGAAGGGAT CCATCGACCCTCTACCC GATCACGATGAATGT AAGTACAAAAAAT GTCTTGAATGTCCCCAANCACCTAGT ] [+] EMBL CD183187 [ AAAAGCATACTGTTGTGTCTCCTAAAGAGGAAGCGAATTATGAGTGTGGAGTTGGTCACCTTCCAGCATCATCTTCGACGAATGAAAATCCACCTCCCGTCCCACCAAAAGCCTCGAAACATATTCCTCCCCTACCTCCAAAACACATAACCCGTCCAGTTCGACAGGTAAAACATAAATGCATAAAATGTGAACCAACTGTCAGTTTGCAAAACCTAAATTTTCCACCTATTAGTCACTTACCAGACGTTTGTGCGGTATGCAGGCGAAGCGGTTTACATCCACACTCTACATGTGACGTTGAGTCAATCGACAAACCTCAGAAGGGAT CCATCGACCCTCTAC ] [+] EMBL CD183189 [ AAAAGCATACTGTTGTGTCTCCTAAAGAGGAAGCGAATTATGAGTGTGGAGTTGGTCACCTTCCAGCATCATCTTCGACGAATGAAAATCCACCTCCCGTCCCACCAAAAGCCTCGAAACATATTCCTCCCCTACCTCCAAAACACATAACCCGTCCAGTTCGACAGGTAAAACATAAATGCATAAAATGTGAACCAACTGTCAGTTTGCAAAACCTAAATTTTCCACCTATTAGTCACTTACCAGACGTTTGTGCGGTATGCAGGCGAAGCGGTTTACATCCACACTCTACATGTGACGTTGAGTC ] [+] EMBL CD183147 [ AAAAGCATACTGTTGTGTCTCCTAAAGAGGAAGCGAATTATGAGTGTGGAGTTGGTCACCTTCCAGCATCATCTTCGACGAATGAAAATCCACCTCCCGTCCCACCAAAAGCCTCGAAACATATTCCTCCCCTACCTCCAAAACACATAACCCGTCCAGTTCGACAGGTAAAACATAAATGCATAAAATGTGAACCAACTGTCAGTTTGCAAAACCTAAATTTTCCACCTATTGGT ] [+] EMBL CD201411 [ TCATTCCTGTTTGTTTACGTTCGATAAAAATATTTCTGATCCGAAATGCACTCAGCCATTCACTTGCAAACGGTTCACAAAACGACATATTTGTCAGGGAGTCTCGAAACACCAAGAACCTAACCTATGCGAGCTCGGAAGGGATTCGAGTTCGACATCTGACTTACCATCATCAAACTGTACTTGCTCTGGAAACGTATGTGGTCTTCATGGTGGTAGTAAACTAGACTCTAGCTACACGCAAAACTCAAGATGCTTTTCCTCAGAATATCGTGGACTCAATTTAATTTCAGATCATTCTACGGGATATAAGGTTTCTCGGTATCAAGAGCAAGGTGATACAAACAAAACAAGGTGCGGTAGTTTACAGTGGATATCTGACACTTTCCAACGTATATTTCATGCTTCTAAGAGCTTGAAATCTAAAACAAATTTTCTTCACCCACCAGGTGATTCACTTGTAAATGTAAAAAATNTACCTCAGTTAAATGAAGATAAATTTTATAGGCGACTGAAACCACTTGTTCATAAGAAGGATCGCGAATTGAAGAAGGATGTNTTCGATCAGAAGTTTGGGTGTCGTTTCGTACAACACAACGTTCTTTCAGCCATAATAGTTCTCTT] [-] EMBL CD189364 [ acGCACTCAGCCATTCACTTGCAAACGGAAAAAAAAACGACATATTTGTCAGGGAGTCTCGAAACACCAAGAACCTAACCTATGCGAGCTCGGAAGGGATTCGAGTTCGACA ] consensusID : consensus_9810#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [AAGAGCAATAGGTAGGTAAAACATAAATGCTTAAAATGTGAACCAACTGTCAGTTTGCAAAACCTAAATTTTCCACCTATTGGTCACTTACCAGACGTTTGTGCGGTATGCAGGCGAAGCGGTTTACATCCACACTCTACATGTGACGTTGAGTCAATCGACAAACCTCAGAAGGATCCAATCGACCCTCTACCCGATCACGAGGATGTAAAGTACAAAAAATGTCTTGAATGTCCCCAAACACCCAGTAGCAATAATATAAAGTCCCAGTACTCGTCACATCAAAACAGTGAAACAAATCGACCGGGTAAAATCCCATCTGATAGGAATGGTCATTCCTGTTTGTTTACGTTCGATAAAAATATTTCT] [+] EMBL CD127922 [AAGAGCAATAGGTAGGTAAAACATAAATGCTTAAAATGTGAACCAACTGTCAGTTTGCAAAACCTAAATTTTCCACCTATTGGTCACTTACCAGACGTTTGTGCGGTATGCAGGCGAAGCGGTTTACATCCACACTCTACATGTGACGTTGAGTCAATCGACAAACCTCAGAAGGATCCAATCGACCCTCTACCCGATCACGAGGATGTAAAGTACAAAAAATGTCTTGAATGTCCCCAAACACCCAGTAGCAATAATATAAAGTCCCAGTACTCGTCACATCAAAACAGTGAAACAAATCGACCGGGTAAAATCCCATCTGATAGGAATGGTCATTCCTGTTTGTTTACGTTCGATAAAAATATTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9810#0 TGTGTGCGTTACTGTACTTAGTGTTATTAAGGATGAAGTCAATCTCCAGAGTACTCAGAA 60 consensus_9810#1 ------------------------------------------------------------ consensus_9810#0 GTCATCTTGTCTCAAATCTCACTGATATTTTTCTTTGTTAACGCCCTATGTTTTCTTTCT 120 consensus_9810#1 ------------------------------------------------------------ consensus_9810#0 GAGCATGCCATGCAATTTGAGACCGGAGTTTGGTCATGTGAAAAGCATACTGTTGTGTCT 180 consensus_9810#1 ------------------------------------------------------------ consensus_9810#0 CCTAAAGAGGAAGCGAATTATGAGTGTGGAGTTGGTCACCTTCCAGCATCATCTTCGACG 240 consensus_9810#1 ------------------------------------------------------------ consensus_9810#0 AATGAAAATCCACCTCCCGTCCCACCAAAAGCCTCGAAACATATTCCTCCCCTACCTCCA 300 consensus_9810#1 ------------------------------------------------------------ consensus_9810#0 AAACACATAACCCGTCCAGTTCGACAGGTAAAACATAAATGCATAAAATGTGAACCAACT 360 consensus_9810#1 -----------AAGAGCAATA-GGTAGGTAAAACATAAATGCTTAAAATGTGAACCAACT 48 * ** * * ***************** ***************** consensus_9810#0 GTCAGTTTGCAAAACCTAAATTTTCCACCTATTGGTCACTTACCAGACGTTTGTGCGGTA 420 consensus_9810#1 GTCAGTTTGCAAAACCTAAATTTTCCACCTATTGGTCACTTACCAGACGTTTGTGCGGTA 108 ************************************************************ consensus_9810#0 TGCAGGCGAAGCGGTTTACATCCACACTCTACATGTGACGTTGAGTCAATCGACAAACCT 480 consensus_9810#1 TGCAGGCGAAGCGGTTTACATCCACACTCTACATGTGACGTTGAGTCAATCGACAAACCT 168 ************************************************************ consensus_9810#0 CAGAAGGATCCCATCGACCCTCTACCCGATCACGAGGATGTAAAGTACAAAAAATGTCTT 540 consensus_9810#1 CAGAAGGATCCAATCGACCCTCTACCCGATCACGAGGATGTAAAGTACAAAAAATGTCTT 228 *********** ************************************************ consensus_9810#0 GAATGTCCCCAAACACCTAGTAGCAATAATATAAAGTCC-AGTACTCGTCACATCAAAAC 599 consensus_9810#1 GAATGTCCCCAAACACCCAGTAGCAATAATATAAAGTCCCAGTACTCGTCACATCAAAAC 288 ***************** ********************* ******************** consensus_9810#0 AGTGAAACAAATCGACCGGGTAAAATCCCATCTGATAGGAATGGTCATTCCTGTTTGTTT 659 consensus_9810#1 AGTGAAACAAATCGACCGGGTAAAATCCCATCTGATAGGAATGGTCATTCCTGTTTGTTT 348 ************************************************************ consensus_9810#0 ACGTTCGATAAAAATATTTCTGATCCGAAATGCACTCAGCCATTCACTTGCAAACGGTTC 719 consensus_9810#1 ACGTTCGATAAAAATATTTCT--------------------------------------- 369 ********************* consensus_9810#0 ACAAAACGACATATTTGTCAGGGAGTCTCGAAACACCAAGAACCTAACCTATGCGAGCTC 779 consensus_9810#1 ------------------------------------------------------------ consensus_9810#0 GGAAGGGATTCGAGTTCGACATCTGACTTACCATCATCAAACTGTACTTGCTCTGGAAAC 839 consensus_9810#1 ------------------------------------------------------------ consensus_9810#0 GTATGTGGTCTTCATGGTGGTAGTAAACTAGACTCTAGCTACACGCAAAACTCAAGATGC 899 consensus_9810#1 ------------------------------------------------------------ consensus_9810#0 TTTTCCTCAGAATATCGTGGACTCAATTTAATTTCAGATCATTCTACGGGATATAAGGTT 959 consensus_9810#1 ------------------------------------------------------------ consensus_9810#0 TCTCGGTATCAAGAGCAAGGTGATACAAACAAAACAAGGTGCGGTAGTTTACAGTGGATA 1019 consensus_9810#1 ------------------------------------------------------------ consensus_9810#0 TCTGACACTTTCCAACGTATATTTCATGCTTCTAAGAGCTTGAAATCTAAAACAAATTTT 1079 consensus_9810#1 ------------------------------------------------------------ consensus_9810#0 CTTCACCCACCAGGTGATTCACTTGTAAATGTAAAAAATNTACCTCAGTTAAATGAAGAT 1139 consensus_9810#1 ------------------------------------------------------------ consensus_9810#0 AAATTTTATAGGCGACTGAAACCACTTGTTCATAAGAAGGATCGCGAATTGAAGAAGGAT 1199 consensus_9810#1 ------------------------------------------------------------ consensus_9810#0 GTNTTCGATCAGAAGTTTGGGTGTCGTTTCGTACAACACAACGTTCTTTCAGCCATAATA 1259 consensus_9810#1 ------------------------------------------------------------ consensus_9810#0 GTTCTCTT 1267 consensus_9810#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||