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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9812#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1536 fasta sequence
[TAATGTGCCCCCGAAAATAGCTAATACTAATATCCTTTCACCTACACCAAGTGTGGTTGTATTTCCAAAAACTAATGTATTTATACCATCGGTATTCGCTCCAGTTTGTAAAGATTCTTCCAATAATTCATCGACCCCAAATCACTCCTGTCATGTGGG-AGAACTACAGTTTCGCAATTCACCGTTGGATAACGTTGTTAAACGTCTCTGTGAAAGCAATCCATCTGGTAGCTCTGAATCTTCTACACTTCCATGTAATAACAAAGTAACTGAACCCCCGAAGTTGTCATCGAGCGTAAATTCTCAGAATATGCCTATCAGTTCGGTTTCAAGTAATCAATGTACCGATTTCATATTCGGCCATAACGTTTCGGAACGCGTCACAAATGCTTCTTTATCTACAGTCGTTAACCGTGATATCTCTGGCAAGGATCTTCCAGTAGAGTCTTCAGAGTCAAACGACCACAGTTTGTCTCCGGAAAAAGAAGAGAGTGTAGATGCTTCTGAAACTGGTGAGCATTGTACTGTTCTTCCTAGTAAACAAACACTAGAAGAATCTGCCGCTGCAGTGACTTCTGAGATGCTCGAAAAGTCGACTTATCTCTTAGCTAATCTTC--CA-GA---ATCTCCTATTCTCACTGGAGAAGAAGGAGAATACCTTACTCTGAAAGCTTACTGTCACTTTTATTGTTTTGATCGTCACAAACATGAGTGGGTTGGTCGTGGACAGGCTTACATTCACTTGAATGACGTTGCAATGAAATCTTCATCGTCACCTAGTCAAGTCTCCCCTTTTCCATCTGGACCGCCTGCACGATCTCGTTTAGTAATCCGCACGTGCCAAACATTGAAACTTTTGGCCAATGTTCCTATCTGGTCCGGTCTGAACGTTGCTATGGCTGATGAACGCTCTATTCGTCTGACTACA-GTCTGTCATCCGTCAGAAACTTTGAATGATTCTCAAAATAAGCCTTCATGTTCTATAGATTCAGTTGTTACAAAACCAGAATTTTGTGCTTATCTACTTGTTATGCATTCACATAAAGAAGCTGACCGTCTTTTTCAAGCTCTTAATTCGCGTATAAACACTTTTACTAGTCGT-TTAAACGCTAAACCTACATATCTTCACGAAACAAATAGTGCATCCAACAGTCCTGGTGATTTTTCCTCTATTTATTCCCGTACACATGGTCATCTTGAGGAAGGTGATGACTCTCCTAGTACTAGTAAAGTTGATGAGGAAAACCTACGACCATACATGAAGTTAGAAATTGACGAACCTCCAAAAGATGCGAATTCTCAATCTATGGGTTTCACAACACCTGACAATTTGAATTGATCTGTCAAGAGAAAATTACAAGATTTTTGATCATATCCTAATGTATTTTAATAACTTTTCTTCAAGTAATCCCGTTG-CGAGAAATGTGCTATAATCTATAAAATATTACATGTATCGTTCATATGTATACGTACATTTATGAAGTTTCCTCCTATTATATACATATACATGTCTATTTATTATGCTGATATCATACAATC]
[+] EMBL CD149128 [TAATGTGCCCCCGAAAATAGCTAATACTAATATCCTTTCACCTACACCAAGTGTGGTTGTATTTCCAAAAACTAATGTATTTATACCATCGGTATTCGCTCCAGTTTGTAAAGATTCTTCCAATAATTCATCGACCCCAAATCACTCCTGTCATGTGGG AGAACTACAGTTTCGCAATTCACCGTTGGATAACGTTGTTA ]
[+] EMBL CD082411 [ CGACCCCAAATTACTCCTGTCATGTGGGTANAACTACAGTTTCGCAACTCACCGTTGGATAACGTTGTTAAACGTCTCTGTGAAAGCAATCCATCTGGTAGCTCTGAATCTTCTACACTTCCATGTAATAACAAAGTAACTGAACCCCCGAAGTTGTCATCGAGCGTAAATTCTCAGAATATGCCTATCAGTTCGGTTTCAAGTAATCAATGTACCGATTTCATATTCGGCCATAACGTTTCGGAACGCGTCACAAATGCTTCTTTATCTACAGTCGTTAACCGTGATATCTCTGGCAAGGATCTTCCAGTAGAGTCTTCAGAGTCAAACGACCACAGTTTGTCTCCGGAAAAAGAAGAGAGTGTAGATGCTTCTGAAACTGGTGAGCATTGTACTGTTCTTCCTAGTAAACAAACACTAGAAGAATCTGCCGCTGCAGTGACTTCTGAGATGCTCGAAAAGTCGACTTATCTCTTAGCTAATCTTC CA GA ATCTCCTATTCTCACTGGAGAAGAAGGAGAATACCTTACTCTGAAAGCTTACTGTCACTTTTATTGTTTTGATCGTCACAAACATGAGTGGGTTGGTCGTGGACAGGCTTACATTCACTTGAATGACGTTGCAATGAAATCTTCATCGTCACCTAGTCAAGTCTNCCCTTTT ]
[+] EMBL CD169832 [ AGATGCTTCTGAAACTGGTGAGCATTGTACTGTTCTTCCTAGTAAACAAACACTAGAAGAATCTGCCGCTGCAGTGACTTCTGAGATGCTCGAAAAGTCGACTTATCTCTTAGCTAATCTTC CA GA ATCTCCTATTCTCACTGGAGAAGAAGGAGAATACCTTACTCTGAAAGCTTACTGTCACTTTTATTGTTTTGATCGTCACAAACATGAGTGGGTTGGTCGTGGACAGGCTTACATTCACTTGAATGACGTTGCAATGAAATCTTCATCGTCACCTAGTCAAGTCTCCCCTTTTCCATCTGGACCGCCTGCACGATCTCGTTTAGTAATCCGCACGTGCCAAACATTGAAACTTTTGGCCAATGTTCCTATCTGGTCCGGTCTGAACGTTGCTATGGCTGATGAACGCTCTATTCGTCTGACTACA GTCTGTCATCCGTCAGAAACTTTGAATGATTCTCAAAATAAGCCTTCATGTTCTATAGATTCAGTTGTTACAAAACCAGAATTTTGGGCTTATCTACTTGTTATGCATTCACATAAAG ]
[-] EMBL CD130229 [ CTGCAGTGACTTCTGAGATGCTCGAAAAGTCGACTTATCTCTTAGCTAATCTTC CA GA ATCTCCTATTCTCACTGGAGAAGAAGGAGAATACCTTACTCTGAAAGCTTACTGTCACTTTTATTGTTTTGATCGTCACAAACATGAGTGGGTTGGTCGTGGACAGGCTTACATTCACTTGAATGACGTTGCAACGAAATCTT ]
[+] EMBL CD080784 [ ccTAGCCAANATTCGGCACGAGGCATCTCCTATTCTCACTGGAGAAGAAGGAGAATACCTTACTCTGAAAGCTTACTGTCACTTTTATTGTTTTGATCGTCACAAACATGAGTGGGTTGGTCGTGGACAGGCTTACATTCACTTGAATGACGTTGCAATGAAATCTTCATCGTCACCTAGTCAAGTCTCCCCTTTTCCATCTGGACCGCCTGCACGATCTCGTTTAGTAATCCGCACGTGCCAAACATTGAAACTTTTGGCCAATGTTCCTATCTGGTCCGGTCTGAACGTTGCTATGGCTGATGAACGCTCTATTCGTCTGACTACA GTCTGTCATCCGTCAGAAACTTTGAATGATTCTCAAAATAAGCCTTCATGTTCTATAGATTCAGTTGTTACAAAACCAGAATTTTGTGCTTATCTACTTGTTATGCATTCACATAAAGAAGCTGACCGTCTTTTTCAAGCTCTTAATTCGCGTATAAACACTTTTACTAGTCGT TTAAACGCTAAACCTACATATCTTCACGAAACAAATAGTGCATCCAACAGTCCTGGTGATTTTTCCTCTATTTATTCCCGTACACATGGTCATCTTGAGGAAGGTGATGACTCTCCTAGTACTAGTAAAGTTGATGAGGAAAACCTACGACCATACATGAAGTTAGAAATTGACGAACCTNCAA ]
[+] EMBL CD079436 [ CCGCCTGCACGATCTCGTTTAGTAATCCGCACGTGCCAAACATTGAAACTTTTGGCCAATGTTCCTATCTGGTCCGGTCTGAACGTTGCTATGGCTGATGAACGCTCTATTCGTCTGACTACATGCATGTCATCCGTCGGAAACTTTGAATGATTCTCAAAATACGCCTTCATGTTCTATAGATTCAGCTGTTACAAAACCAGAATTTTGTGCTTATCTACTTGTTATGCATTCACATAAAGAAGCTGACCGTCTTTTTCAAGCTCTTAATTCGCGTATAAACACTTTTACTAGTCGTATTAAACGCTAAACCTACATATCTTCACGAAACAAATAGTGCATGCAACAGTCCTGGGGATTTTTCCTCTATTTATTCGCGCACACATGGTCATCTTGAGGAAGGTGATGACTCTACTAGTACTAGTAGAGATGATGAGGAAAACCTACGACCATACATGAAGCTAGAAATTGACGAACCTCCAAAAGATGCGAATTCTCAATCTATGGGTTGCACAGCACCTGACAATTTGAACTGATCTGTCAAGAGAAAATTACAAGATTTTTGATCATATCCTACTGTATTGTAATAACTCTTATTCAAGGAATCTCGCTGCCGAG AATGTGCTATAATCTATAAACTATTACATGTATCGCTCATATGTATACGTACATTTATGAAGTTTCCTCCTATTATATACATATACATGTCTATTTATTATGCTGATATCATACCAT ]
[+] EMBL CD079425 [ CCGCCTGCACGATCTCGTTTAGTAATCCGCACGTGCCAAACATTGAAACTTTTGGCCAATGTTCCTATCTGGTCCGGTCTGAACGTTGCTATGGCTGATGAACGCTCTATTCGTCTGACTACA GTCTGTCATCCGTCAGAAACTTTGAATGATTCTCAAAATAAGCCTTCATGTTCTATAGATTCAGTTGTTACAAAACCAGAATTTTGTGCTTATCTACTTGTTATGCATTCACATAAAGAAGCTGACCGTCTTTTTCAAGCTCTTAATTCGCGTATAAACACTTTTACTAGTCGT TTAAACGCTAAACCTACATATCTTCACGAAACAAATAGTGCATCCAACAGTCCTGGTGATTTTTCCTCTATTTATTCCCGTACACATGGTCATCTTGAGGAAGGTGATGACTCTCCTAGTACTAGTAAAGTTGATGAGGAAAACCTACGACCATACATGAAGTTAGAAATTGACGAACCTCCAAAAGATGCGAATTCTCAATCTATGGGTTTCACAACACCTGACAATTTGAATTGATCTGTCAAGAGAAAATTACAAGATTTTTGATCATATCCTAATGTATTTTAATAACTTTTCTTCAAGTAATCCCGTTG CGAGAAATGTGCTATAATCTAATAAATATTACATGTATCGTTCATATGTATACGTACATTTATGAAGNTTCCTCCTATTATATACATATACATGTCTATTTATTATGCTGATATCATACAAT ]
[-] EMBL CD073698 [ GTTGCTATGGCTGATGAACGCTCTATTCGTCTGACTACA GTCTGTCATCCGTCAGAAACTTTGAATGATTCTCAAAATAAGCCTTCATGTTCTATAGATTCAGTTGTTACAAAACCAGAATTTTGTGCTTATCTACTTGTTATGCATTCACATAAAGAAGCTGACCGTCTTTTTCAAGCTCTTAATTCGCGTATAAACACTTTTACTAGTCGT TTAAACGCTAAACCTACATATCTTCACGAAACAAATAGTGCATCCAACAGTCCTGGTGATTTTTCCTCTATTTATTCCCGTACACATGGTCATCTTGAGGAAGGTGATGACTCTCCTAGTACTAGTAAAGTTGATGAGGAAAACCTACGACCATACATGAAGTTAGAAATTGACGAACCTCCAAAAGATGCGAATTCTCAATCTATGGGTTTCACAACACCTGACAATTTGAATTGATCTGTCAAGAGAAAATTACAAGATTTTTGATCATATCCTAATGTATTTTAATAACTTTTCTTCAAGTAATCCCGTTG CGAGAAATGTGCTATAATCTATAAAATATTACATGTATCGTTCATATGTATACGTACATTTATGAAGTTTCCTCCTATTATATACATATACATGTCTATTTATTAAGCTGATATCATACAATC]
[-] EMBL CD136728 [ TCCGTCAGAAACTNTGAATGATTCTCAAAATAAGCCTCCATGTTCTATAGATTCAGTTGTTACAAAACCAGAATTTTGTGCTTATCTACTTGTTATGCATTCACATAAAGAAGCTGACCGTCTTTTTCAAGCTCTTAATTCGCGTATAAACACTTTTACTAGTCGT TTAAACGCTAAACCTACATATCTTCACGAAACAAATAGTGCATCCAACAGTCCTGGTGATTTTTCCTCTATTTATTCCCGTACACATGGTCATCTTGAGGAAGGTGATGACTCTCCTAGTACTAGTAAAGTTGATGAGGAAAACCTACGACCATACATGAAGTTAGAAATTGACGAACCTCCAAAAGATGCGAATCCTCAATCTATGGGTTTCACAACACCTGACAATTTGAATTGATCTGTCAAGAGAAAATTACAAGATTTTTGATCATATCCTAATGTATTTTAATAACTTTTCTTCAAGTAATCCCGTTG CGAGAAATGTGCTATAATCTATAAAATATTACATGTATCGTTCATATGTAT ]
consensusID : consensus_9812#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 536 fasta sequence
[AAGTCTCCCCTTTTCCATCTGGACCGCCTGCACGATCTCGTTTAGTAATCCGCACGTGCCAAACATTGAAACTTTTGGCCAATGTTCCTATCTGGTCCGGTCTGAACGTTGCTATGGCTGATGAACGCTCTATTCGTCTGACTACAGTCTGTCATCCGTCAGAAACTTTGAATGATTCTCAAAATAAGCTTCTATAAACAGGACATGATTACAATGTGGATAAGTCCTAGACCGTCGGACCACTATCATAACTACATGAAGTTAGAAATTGACGAACCTCCAAAAGATGCGAATTCTCAATCTATGGGTTTCACAACACCTGACAATTTGAATTGATCTGTCAAGAGAAAATTACAAGATTTTTGATCATATCCTAATGTATTTTAATAACTTTTCTTCAAGTAATCCCGTTGCGAGAAATGTGCTATAATCTATAAAATATTACATGTATCGTTCATATGTATACGTACATTTATGAAGTTTCCTCCTATTATATACATATACATGTCTATTTATTATGCTGATATCATACAATC]
[-] EMBL CD076011 [AAGTCTCCCCTTTTCCATCTGGACCGCCTGCACGATCTCGTTTAGTAATCCGCACGTGCCAAACATTGAAACTTTTGGCCAATGTTCCTATCTGGTCCGGTCTGAACGTTGCTATGGCTGATGAACGCTCTATTCGTCTGACTACAGTCTGTCATCCGTCAGAAACTTTGAATGATTCTCAAAATAAGCTTCTATAAACAGGACATGATTACAATGTGGATAAGTCCTAGACCGTCGGACCACTATCATAACTACATGAAGTTAGAAATTGACGAACCTCCAAAAGATGCGAATTCTCAATCTATGGGTTTCACAACACCTGACAATTTGAATTGATCTGTCAAGAGAAAATTACAAGATTTTTGATCATATCCTAATGTATTTTAATAACTTTTCTTCAAGTAATCCCGTTGCGAGAAATGTGCTATAATCTATAAAATATTACATGTATCGTTCATATGTATACGTACATTTATGAAGTTTCCTCCTATTATATACATATACATGTCTATTTATTATGCTGATATCATACAATC]
[-] EMBL CD074705 [ CAATCTATGGGTTTCACAACCCCTGCCAATTTGAATTGATCTGTCAAGAGCAAATTACAAGATTTTGGATCATATCCTAATGTATTTTAATAACTTTTTTTCAAGTAATCCCGTTGCGAGAAATGTGCTATAATCTATAAAATATTACATGTATCGTTCATATGTATACGTACATTTATGAAGTTTCCTCCTATTATATACATATACATGTCTATTTATTATGCTGATATCATCCAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9812#0 TAATGTGCCCCCGAAAATAGCTAATACTAATATCCTTTCACCTACACCAAGTGTGGTTGT 60
consensus_9812#1 ------------------------------------------------------------
consensus_9812#0 ATTTCCAAAAACTAATGTATTTATACCATCGGTATTCGCTCCAGTTTGTAAAGATTCTTC 120
consensus_9812#1 ------------------------------------------------------------
consensus_9812#0 CAATAATTCATCGACCCCAAATCACTCCTGTCATGTGGGAGAACTACAGTTTCGCAATTC 180
consensus_9812#1 ------------------------------------------------------------
consensus_9812#0 ACCGTTGGATAACGTTGTTAAACGTCTCTGTGAAAGCAATCCATCTGGTAGCTCTGAATC 240
consensus_9812#1 ------------------------------------------------------------
consensus_9812#0 TTCTACACTTCCATGTAATAACAAAGTAACTGAACCCCCGAAGTTGTCATCGAGCGTAAA 300
consensus_9812#1 ------------------------------------------------------------
consensus_9812#0 TTCTCAGAATATGCCTATCAGTTCGGTTTCAAGTAATCAATGTACCGATTTCATATTCGG 360
consensus_9812#1 ------------------------------------------------------------
consensus_9812#0 CCATAACGTTTCGGAACGCGTCACAAATGCTTCTTTATCTACAGTCGTTAACCGTGATAT 420
consensus_9812#1 ------------------------------------------------------------
consensus_9812#0 CTCTGGCAAGGATCTTCCAGTAGAGTCTTCAGAGTCAAACGACCACAGTTTGTCTCCGGA 480
consensus_9812#1 ------------------------------------------------------------
consensus_9812#0 AAAAGAAGAGAGTGTAGATGCTTCTGAAACTGGTGAGCATTGTACTGTTCTTCCTAGTAA 540
consensus_9812#1 ------------------------------------------------------------
consensus_9812#0 ACAAACACTAGAAGAATCTGCCGCTGCAGTGACTTCTGAGATGCTCGAAAAGTCGACTTA 600
consensus_9812#1 ------------------------------------------------------------
consensus_9812#0 TCTCTTAGCTAATCTTCCAGAATCTCCTATTCTCACTGGAGAAGAAGGAGAATACCTTAC 660
consensus_9812#1 ------------------------------------------------------------
consensus_9812#0 TCTGAAAGCTTACTGTCACTTTTATTGTTTTGATCGTCACAAACATGAGTGGGTTGGTCG 720
consensus_9812#1 ------------------------------------------------------------
consensus_9812#0 TGGACAGGCTTACATTCACTTGAATGACGTTGCAATGAAATCTTCATCGTCACCTAGTCA 780
consensus_9812#1 -----------------------------------------------------------A 1
*
consensus_9812#0 AGTCTCCCCTTTTCCATCTGGACCGCCTGCACGATCTCGTTTAGTAATCCGCACGTGCCA 840
consensus_9812#1 AGTCTCCCCTTTTCCATCTGGACCGCCTGCACGATCTCGTTTAGTAATCCGCACGTGCCA 61
************************************************************
consensus_9812#0 AACATTGAAACTTTTGGCCAATGTTCCTATCTGGTCCGGTCTGAACGTTGCTATGGCTGA 900
consensus_9812#1 AACATTGAAACTTTTGGCCAATGTTCCTATCTGGTCCGGTCTGAACGTTGCTATGGCTGA 121
************************************************************
consensus_9812#0 TGAACGCTCTATTCGTCTGACTACAGTCTGTCATCCGTCAGAAACTTTGAATGATTCTCA 960
consensus_9812#1 TGAACGCTCTATTCGTCTGACTACAGTCTGTCATCCGTCAGAAACTTTGAATGATTCTCA 181
************************************************************
consensus_9812#0 AAATAAGCCTTCATGTTCTATAGATTCAGTTGTTACAAAACCAGAATTTTGTGCTTATCT 1020
consensus_9812#1 AAATAAGC-------TTCTATAAA-----------------CAGGA-------------- 203
******** ******* * *** *
consensus_9812#0 ACTTGTTATGCATTCACATAAAGAAGCTGACCGTCTTTTTCAAGCTCTTAATTCGCGTAT 1080
consensus_9812#1 ----------------CATGA--------------------------------------- 208
*** *
consensus_9812#0 AAACACTTTTACTAGTCGTTTAAACGCTAAACCTACATATCTTCACGAAACAAATAGTGC 1140
consensus_9812#1 ------------------------------------------TTACAATGTGGATA---- 222
* ** * ***
consensus_9812#0 ATCCAACAGTCCTGGTGATTTTTCCTCTATTTATTCCCGTACACATGGTCATCTTGAGGA 1200
consensus_9812#1 -------AGTCCTAG-----------------------------ACCGTCG--------- 237
****** * * ***
consensus_9812#0 AGGTGATGACTCTCCTAGTACTAGTAAAGTTGATGAGGAAAACCTACGACCATACATGAA 1260
consensus_9812#1 ----GACCACTATCATAAC---------------------------------TACATGAA 260
** *** ** ** ********
consensus_9812#0 GTTAGAAATTGACGAACCTCCAAAAGATGCGAATTCTCAATCTATGGGTTTCACAACACC 1320
consensus_9812#1 GTTAGAAATTGACGAACCTCCAAAAGATGCGAATTCTCAATCTATGGGTTTCACAACACC 320
************************************************************
consensus_9812#0 TGACAATTTGAATTGATCTGTCAAGAGAAAATTACAAGATTTTTGATCATATCCTAATGT 1380
consensus_9812#1 TGACAATTTGAATTGATCTGTCAAGAGAAAATTACAAGATTTTTGATCATATCCTAATGT 380
************************************************************
consensus_9812#0 ATTTTAATAACTTTTCTTCAAGTAATCCCGTTGCGAGAAATGTGCTATAATCTATAAAAT 1440
consensus_9812#1 ATTTTAATAACTTTTCTTCAAGTAATCCCGTTGCGAGAAATGTGCTATAATCTATAAAAT 440
************************************************************
consensus_9812#0 ATTACATGTATCGTTCATATGTATACGTACATTTATGAAGTTTCCTCCTATTATATACAT 1500
consensus_9812#1 ATTACATGTATCGTTCATATGTATACGTACATTTATGAAGTTTCCTCCTATTATATACAT 500
************************************************************
consensus_9812#0 ATACATGTCTATTTATTATGCTGATATCATACAATC 1536
consensus_9812#1 ATACATGTCTATTTATTATGCTGATATCATACAATC 536
************************************
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||