These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9814#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 729 fasta sequence [CCCTCGGGCCAANAATTCGGCACGAGGTTAACCATTAACCATGAAGCCATTATGTATATTATGCTTACTTATTTCATTAATATTCTATGTGAATAGTATAATGGAAGATTCTATACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAAGTCAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAAGCTAAGAATATAATTTTAAGTTCATCAACAAATAAGTCAATCAGTGATAGAATTCAAAATCTTTGCATGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATATACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCTATGACCCACCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAATCAATATTATTGTC-GGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTAATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAGTAACATTAAGCTTTAACAAACAATTTCTTATACAACGTTTTTGTCAGAATGCTGGATTTTGTTCAGAAGCCTAAAATATCAATGTGGATGAATATTATTTCCTAATTTAATCGACTACGTATGAAATATCTACTATTTCTGATCGCTAAG-CAATATACTA] [+] EMBL CD082667 [CCCTCGGGCCAANAATTCGGCACGAGGTTAACCATTAACCATGAAGCCATTATGTATATTATGCTTACTTATTTCATTAATATTCTATGTGAATAGTATAATGGAAGATTCTATACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAAGTCAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAAGCTAAGAATATAATTTTAAGTTCATCAACAAATAAGTCAATCAGTGATAGAATTCAAAATCTTTGCATGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATATACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCTATGACCCACCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAATCAATATTATTGTC GGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTAATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAGTAACATTAAGCTNTAACAAACAATTTCTTATACAACGTTTTTGTCAGAATGCTGGATTTTGTTCAGAAGCCTAAAATATCAATGTGGATGAATATTATTTCCTAAATTAATCGACTACGTATGAAATATCTACTATTTCTGATCGCTAAG CAATATACTA] [+] EMBL AI977652 [ TAACCATTAACCATGAAGCCATTATGTATATTATGCTTACTTATTTCATTAATATTCTATGTGAATAGTATAATGGAAGATTCTATACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAAGTCAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAAGCTAAGAATATAATTTTAAGTTCATCAACAAATAAGTCAATCAGTGATAGAATTCAAAATCTTTGCATGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATATACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCTATGACCCACCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAATCAATATTATTGTC GGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTAATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAGTAACATTAAGCTTTAACAAACAATTTCTTAT ] [+] EMBL CD078534 [ TGTATATTATGCTTACTTATTTCATTAATATTCTATGTGAATAGTATAATGGAAGATTCTATACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAAGTCAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAAGCTAAGAATATAATTTTAAGTTCATCAACAAATAAGTCAATCAGTGATAGAATTCAAAATCTTTGCATGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATATACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCTATGACCCACCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAATCAATATTATTGTC GGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTAATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAGTAACATTAAGCTTTAACAAACAATTTCTTATANCACGTTTTTGTCAGAATGCTGGATTTTGTTCAGAAGCCT AAATATCAATGTGGATGAATATTATTTCCTAATTTAATCGACTACGTATGAAATATCTACTATTTCTGATCGCTAAGCCAATATACT ] [+] EMBL CD079252 [ AAAATCTTTGCATGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATATACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCTATGACCCACCTGAGATATCTGTTTGTGAATATTGCCTAAAATCTGGACTCTTGATTAAATCAATATTATTGTCGGGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTAATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAGTAACATTAAGCTTTAACAAACAATTTCTTATACAACGTTTTTGTCAGAATGCTGGATTTTGTTCAGAAGCCTAAAATATCAATGTGGATGAATATTATTTCCTAATTTAATCGACTACGTATGAAATATCTACTATTTCTGATCGCTAGC CAATATACT ] consensusID : consensus_9814#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 640 fasta sequence [GCAGGCCAGAATTCGGCACGAGGACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAAGTCAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAAGCTAAGAATATAATTTTAAGTTCATCAACAAATAAGTCAATCAGTGATAGAATTCAAAATCTTTGCATGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATATACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCTATGACCCA-CCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAATCAATATTATTGTCGGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTAATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAGTAACATTAAGCTTTAACAAACAATTTTTTATACAACGTTTTTGTCAGAATGCTGGATTTTGTTCAGAAGCCTAAAATATCAATGTGGATGAAT-ATTATTTCCTAATTTAATCGACTACGTATGAAATATCTACTATTTCTGATCGCTAAGCAAATATACTAT] [+] EMBL CD082533 [GCAGGCCAGAATTCGGCACGAGGACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAAGTCAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAAGCTAAGAATATAATTTTAAGTTCATCAACAAATAAGTCAATCAGTGATAGAATTCAAAATCTTTGCATGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATATACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCTATGACCCA CCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAATCAATATTATTGTCGGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTAATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAGTAACATTAAGCTTTAACAAACAATTTCTTATACAACGTTTTTGTCAGAATGCTGGATTTTGTTCAGAAGCCTAAAATATCAATGTGGATGAAT ATTATTTCCTAATTTAATCGACTACGTATGAAATATCTACTATTTCTGATCGCTAAGCANATATACT ] [-] EMBL CD076129 [ CTTCGAAGACGAAGTCAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAAGCTAAGAATATAATTTTAAGTTCATCAACAAATAAGTCAATCAGTGATAGAATTCAAAATCTTTGCATGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATATACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCTATGACCCA CCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAATCAATATTATTGTCGGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTAATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAGTAACATTAAGCTTTAACAAACAATTTTTTATACAACGTTTTTGTCAGAATGCTGGATTTTGTTCAGAAGCCTAAAATATCAATGTGGATGAATAATAATTTCCTAATTTAA ] [-] EMBL CD073980 [ GTCAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAAGCTAAGAATATAATTTTAAGTTCATCAACAAATAAGTCAATCAGTGATAGAATTCAAAATCTTTGCATGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATATACTTAATACAATTCAGAAGGTGGTACCCCAAAAGTTGTGTGCTACATTCGATTTTTGCTATGACCCA CCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAATCAATATTATTGTCGGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTAATACATAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAGTAACATTAAGCTTTAACCAACAATTTTTTATACAACGTTTTTGTCAGAATGCTGGATTTTGTTCAGAAGCCTAAAATATCAATGTGGATGAAT ATTATTTCCTAATTTAATCGACTACGTATGAAATATTTACTATTTGTGATCGGTAAGCAAAAAAACTA ] [-] EMBL BG930374 [ CATGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATATACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCTATGAg ] [-] EMBL CD077148 [ GCTATGACCCACCCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAATCAATATTATTGTCGGAGAATTTTGTATCCGAGTTATATAATAATACGTT AATATGTGTAATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAGTAACATTAAGCTTTAACAAACAATTTTTTATACAACGTTTTTGTCAGAATGCTGGATTTTGTTCAGAAGCCTAAAATATCAATGTGGATGAAT ATTATTTCCTAATTTAATCGACTACGTATGAAATATCTACTATTTCTGATCGCTAAGCAAATATACTAT] consensusID : consensus_9814#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence [TGTTTAACTTCTATATAAATAATCATTATATCATCATATTAGAATAGTAATATTAACCATTAACCATGAAGCCATTATGTATATTATTGCTTACTTATTTCATTAATATTCTATGTGAATAGTATAATGGAAGATTCTATACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAAGTCAAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAAGCTAAGAATATAATTTTAAGTCCACCAACAAATAAGTCACTCGAGTGAGAGAATTCAAAATCTTTGCATGGAGACCGGCC] [+] EMBL SM58070 [TGTTTAACTTCTATATAAATAATCATTATATCATCATATTAGAATAGTAATATTAACCATTAACCATGAAGCCATTATGTATATTATTGCTTACTTATTTCATTAATATTCTATGTGAATAGTATAATGGAAGATTCTATACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAAGTCAAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAAGCTAAGAATATAATTTTAAGTCCACCAACAAATAAGTCACTCGAGTGAGAGAATTCAAAATCTTTGCATGGAGACCGGCC] consensusID : consensus_9814#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence [ATTCGGCACGAGTGGTTATACATTTTAAACTGAATAATGTTTCTTTAAAAAAAAAAACTTTTAAATCATTCAAATCTTTACCTGTTTTCTTGTTTGCCTCACATATAGAATGCTGGATTTTGTACAGAAGCCTAAAATATCAATGTGGATGAATATTATTTCCTAATTTAATCGACTACGTATGGAAATATCTACTATTTCTGATCGCTAAGCAAATAT] [+] EMBL AI014215 [ATTCGGCACGAGTGGTTATACATTTTAAACTGAATAATGTTTCTTTAAAAAAAAAAACTTTTAAATCATTCAAATCTTTACCTGTTTTCTTGTTTGCCTCACATATAGAATGCTGGATTTTGTACAGAAGCCTAAAATATCAATGTGGATGAATATTATTTCCTAATTTAATCGACTACGTATGGAAATATCTACTATTTCTGATCGCTAAGCAAATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9814#0 ----------------------CCCTCGGGCCAANAATTCGGCACG---AGGTTAACCAT 35 consensus_9814#2 TGTTTAACTTCTATATAAATAATCATTATATCATCATATTAGAATAGTAATATTAACCAT 60 consensus_9814#1 ------------------------------------------------------------ consensus_9814#3 -------ATTCGGCACGAGTGGTTAT-ACATT-TTAAACT-GAATA---ATGTTT-CTTT 46 consensus_9814#0 TAACCATGAAGCCATTATGT-ATATTAT-GCTTACTTATTTCATTAATATTCTATGTGAA 93 consensus_9814#2 TAACCATGAAGCCATTATGT-ATATTATTGCTTACTTATTTCATTAATATTCTATGTGAA 119 consensus_9814#1 ---------------------------------------------------------GCA 3 consensus_9814#3 AAAAAAAAAAACTTTTAAATCATTCAAATCTTTACCTGTTTTCTTGTTTGCCT---CACA 103 * consensus_9814#0 TAGTATAATGGAAGATTCTATACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAA- 152 consensus_9814#2 TAGTATAATGGAAGATTCTATACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAA- 178 consensus_9814#1 GGCCAGAATTCGGCACGA-GGACACCAACTACAACTTCAAAAGGATCTTCGAAGACGAA- 61 consensus_9814#3 TA-TAGAATGCTGGATTTTGTACAGAAGC--------CTAAAATATCAATGTGGATGAAT 154 * *** * *** * * * *** *** * ** *** consensus_9814#0 GTCAA-CCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAA-GCTAAGAA 210 consensus_9814#2 GTCAAACCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAA-GCTAAGAA 237 consensus_9814#1 GTCAA-CCAAATCTCTATCAGTGTATCGCATGCAGATCCGGTGTTGGACAA-GCTAAGAA 119 consensus_9814#3 ATTATTTCCTAATTTAATCGACTACGTATGGAAATATCTACTATTTCTGATCGCTAAGCA 214 * * * * * *** * *** * ** * ****** * consensus_9814#0 TATAATTTTAAGTTCATCAACAAATAAGTCAATC-AGTGATAGAATTCAAAATCTTTGCA 269 consensus_9814#2 TATAATTTTAAGTCCACCAACAAATAAGTCACTCGAGTGAGAGAATTCAAAATCTTTGCA 297 consensus_9814#1 TATAATTTTAAGTTCATCAACAAATAAGTCAATC-AGTGATAGAATTCAAAATCTTTGCA 178 consensus_9814#3 AATAT------------------------------------------------------- 219 *** consensus_9814#0 TGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATA 329 consensus_9814#2 TGGAGACCGGCC------------------------------------------------ 309 consensus_9814#1 TGAGAACTGGTCCATTTAATACATCATGTCAAATGTTTGCGTATGAACTTTCATCAAATA 238 consensus_9814#3 ------------------------------------------------------------ consensus_9814#0 TACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCT 389 consensus_9814#2 ------------------------------------------------------------ consensus_9814#1 TACTTAATACAATTCAGAAGGTGGTACCACAAAAGTTGTGTGCTACATTCGATTTTTGCT 298 consensus_9814#3 ------------------------------------------------------------ consensus_9814#0 ATGACCCACCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAAT 449 consensus_9814#2 ------------------------------------------------------------ consensus_9814#1 ATGACCCACCTGAGATATCTGTTTGTGAATATTGCCTCAAATCTGGACTCTTGATTAAAT 358 consensus_9814#3 ------------------------------------------------------------ consensus_9814#0 CAATATTATTGTCGGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTA 509 consensus_9814#2 ------------------------------------------------------------ consensus_9814#1 CAATATTATTGTCGGAGAATTTTGTATCCGAGTTATATAATAATACGTTAAATATGTGTA 418 consensus_9814#3 ------------------------------------------------------------ consensus_9814#0 ATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAG 569 consensus_9814#2 ------------------------------------------------------------ consensus_9814#1 ATACACAACCCAATCATTCACTTATTTGTGGTCCATTCCTACATGATTTGTTTGTAGCAG 478 consensus_9814#3 ------------------------------------------------------------ consensus_9814#0 TAACATTAAGCTTTAACAAACAATTTCTTATACAACGTTTTTGTCAGAATGCTGGATTTT 629 consensus_9814#2 ------------------------------------------------------------ consensus_9814#1 TAACATTAAGCTTTAACAAACAATTTTTTATACAACGTTTTTGTCAGAATGCTGGATTTT 538 consensus_9814#3 ------------------------------------------------------------ consensus_9814#0 GTTCAGAAGCCTAAAATATCAATGTGGATGAATATTATTTCCTAATTTAATCGACTACGT 689 consensus_9814#2 ------------------------------------------------------------ consensus_9814#1 GTTCAGAAGCCTAAAATATCAATGTGGATGAATATTATTTCCTAATTTAATCGACTACGT 598 consensus_9814#3 ------------------------------------------------------------ consensus_9814#0 ATGAAATATCTACTATTTCTGATCGCTAAGCAATATACTA-- 729 consensus_9814#2 ------------------------------------------ consensus_9814#1 ATGAAATATCTACTATTTCTGATCGCTAAGCAAATATACTAT 640 consensus_9814#3 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||