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Schistosoma mansoni
cluster # 9816 cluster # 9816       Sequences # 11       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9816#0 length = 800 sequences # 7  
consensus_9816#1 length = 681 sequences # 4  

consensusID : consensus_9816#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 800
fasta sequence
                              [CATTGCGAATGGATGCCGGAGTTGCTCCGTAGGACTTTGAACATAGGATTATTTTGCGCCGGAATGGTTCATTAGGCCTAGGATCTTTGATAGTATCGAAATAAGAAAACCCAAGATCTACTAGTAAAGGTTCAAGATTTGATGGATTGATTTTCAAAGTTTCATAAATGGATCTGTGTTTAGCCGTCAGTCGGGTCCTCTTATATGATGATTTGGGTTGTGGCTCAAGAATTAGGTGTCCACCTGGTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGAATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTTCATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTTAATTTTTTCATACCTGACATTAGATTCTATATCCCAGCGTAATTTCTCTCTTTGCATACTTTGGGCGTTTGCAATTAATTCAGCATCACAGTCAAACGCATCTATTTTCTTGACTTCTGGAAACTTT-TCAAGCACACCAAACGTAAGTGTCCCGTTATGACATCCGTAGTCTGCTACATCTTTACCCACGAACCACTCAGGCATTAAATAAGGAAGTCTATCATNTGGATCGCGACGTCTGTAGTAATCACAATAATTTNCCTGTTGTGGGAAGGAAACCCCTGATACAACGACCAACGGTGTAACACTTAGAGGCCCGCATAGGACGTCTACGTATAAGGCGATGAGACTGTCGTTTCGAAATGAAACCGCAACTGCGANNCTCCAATCGAATTNN]

[+] EMBL CD186583             [CATTGCGAATGGATGCCGGAGTTGCTCCGTAGGACTTTGAACATAGGATTATTTTGCGCCGGAATGGTTCATTAGGCCTAGGATCTTTGATAGTATCGAAATAAGAAAACCCAAGATCTACTAGTAAAGGTTCAAGACTTGATGGATTGATTTTCAAAGTTTCATAAATGGATCTGTGTTTAGCCGTCAGTCGGGTCCTCTTATATGATGATTTGGGTTGTGGCTCAAGAATTAGGTGTCCACCTGGTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGAATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTTCATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTCTATTTTTTCATACCTGACATT                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD142464             [                                                                            CCTAGGATCTTTGATAGTATCGAAATAAGAAAACCCAAGATCTACTAGTAAAGGTTCAGGATTTGATGGATTGATTTTCAAAGTTTCATAAATGGATCTGTGTTTAGCCGTCAGTCGGGTCCCCTTATATGATGATTTGGGTTGTGGCTCAAGAATTAGGTGTCCACCTGGTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGAATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD145831             [                                                                                                                                         TTTGATGGATTGATTTTCAAAGTTTCATAAATGGATCTGTGTTTAGCCGTCAGTCGGGTCCTCTTATATGATGATTTGGGTTGTGGCTCAAGAATTAGGTGTCCACCTGGTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGAATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTTCATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTTAATTTTTTCATACCTGACATTAGATTCTATATCCCAGCGTAATTTCTCTCTTTGCATACTTTGGGCGTTTGCAATTAATTCAGCATCACAGTCAAACGC                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD116884             [                                                                                                                                                                                                                                                      GTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGAATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTTCATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTTAATTTTTTCATACCTGACATTAGATTCTATATCCCAGCGTAATTTCTCTCTTTGCATACTTTGGGCGTTTGCAATTAATTCAGCATCACAGTCAAACGCATCTATTTTCTTGACTTCTGGAAACTTT TCAAGCACACCAAACGTAAGTGTCCCGTTATGACATCCGTAGTCTG                                                                                                                                                                                                                                ]
[+] EMBL CD116998             [                                                                                                                                                                                                                                                      GTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGTATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTTCATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTTAATTTTTTCATACCTGACATTAGATTCTATATCCCAGCGTAATTTCTCTCTTTGCATACTTTGGGCGTTTGCAATTAATTCAGCATCACAGTCAAACGCATCTATTTTCTTGACTTCTGGAAACTTT TCAAGCACACCAAACGTAAGTGTCCCGTTATGACATCCGTAGTCTG                                                                                                                                                                                                                                ]
[+] EMBL CD117097             [                                                                                                                                                                                                                                                      GTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGTATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTTCATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTTAATTTTTTCATACCTGACATTAGATTCTATATCCCAGCGTAATTTCTCTCTTTGCATACTTTGGGCGTTTGCAATTAATTCAGCATCACAGTCAAACGCATCTATTTTCTTGACTTCTGGAAACTTT TCAAGCACACCAAACGTAAGTGTCCCGTTATGACATCCGTAGTCTG                                                                                                                                                                                                                                ]
[-] EMBL CD090861             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AAACTTTNTCAAGCACACCAAACGTAAGTGTCCCGTTATGACATCCGTAGTCTGCTACATCTTTACCCACGAACCACTCAGGCATTAAATAAGGAAGTCTATCATNTGGATCGCGACGTCTGTAGTAATCACAATAATTTNCCTGTTGTGGGAAGGAAACCCCTGATACAACGACCAACGGTGTAACACTTAGAGGCCCGCATAGGACGTCTACGTATAAGGCGATGAGACTGTCGTTTCGAAATGAAACCGCAACTGCGANNCTCCAATCGAATTNN]


>consensus_9816#0 CATTGCGAATGGATGCCGGAGTTGCTCCGTAGGACTTTGAACATAGGATTATTTTGCGCC GGAATGGTTCATTAGGCCTAGGATCTTTGATAGTATCGAAATAAGAAAACCCAAGATCTA CTAGTAAAGGTTCAAGATTTGATGGATTGATTTTCAAAGTTTCATAAATGGATCTGTGTT TAGCCGTCAGTCGGGTCCTCTTATATGATGATTTGGGTTGTGGCTCAAGAATTAGGTGTC CACCTGGTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCAT GATTAAGATGAATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTTCAT CATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTTAATTTTTTCATACCTGA CATTAGATTCTATATCCCAGCGTAATTTCTCTCTTTGCATACTTTGGGCGTTTGCAATTA ATTCAGCATCACAGTCAAACGCATCTATTTTCTTGACTTCTGGAAACTTTTCAAGCACAC CAAACGTAAGTGTCCCGTTATGACATCCGTAGTCTGCTACATCTTTACCCACGAACCACT CAGGCATTAAATAAGGAAGTCTATCATNTGGATCGCGACGTCTGTAGTAATCACAATAAT TTNCCTGTTGTGGGAAGGAAACCCCTGATACAACGACCAACGGTGTAACACTTAGAGGCC CGCATAGGACGTCTACGTATAAGGCGATGAGACTGTCGTTTCGAAATGAAACCGCAACTG CGANNCTCCAATCGAATTNN



consensusID : consensus_9816#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 681
fasta sequence
                              [ACGGTGTAACACTTAGAGGCCCGCATAGGACGTCTACGTATAAGGCGATGAGACTGTCGTTTCGAATGACAATCCAACTTTCGACCGCTGAGACGAGGTGATCCCGAGTCTTTTGACGCGCTTGAAGTCTGAATGCCATGGTTCTGAGGACTACCACAATCAACATCACCGGCAACACTAGCAGCTGGTGTGTTCATACGCGAGTCGCCGCGAAGCGGTGACAAACCTTCCACTCGACGGCGTTCCGTCTCTTTCATTAGGTCTTGCAAATTTAAGGGATCACTGGGATTTAAGGTGTTTTTTGATGCTCGAACACTTCTTTTTCTTCGGTTTAGAAAACGAGAGCGAGTGAAAGAGTTGTCTCTTTTTGCTCTAACACGATTTATGTGATGTGGCCGAATAGCTAAGTGCGTCAGTAGTGGTATTTGACTTCCAAGTAAACCAGGAGCGTTGGCAAATGAAGTGATTAGTCGAACATCATGCCTCACTCCCGGCGGTCGATTGACTGTAGGGTGTGGATACCAATTTCCGAAATGTCTTGAAGCAACACCTCTCGGCTGAGGGAAGCAGTAAGAGCGAGCAGACACTCTATGCTCACGAGAATAACTTGCAGAACCGCGCAAATGACGCATTAATGCGCAAAATATCAATTAATCCGACGAAGATGGCCGACATTCAAAA]

[-] EMBL CD191403             [ACGGTGTAACACTTAGAGGCCCGCATAGGACGTCTACGTATAAGGCGATGAGACTGTCGTTTCGAATGACAATCCAACTTTCGACCGCTGAGACGAGGTGATCCCGAGTCTTTTGACGCGCTTGAAGTCTGAATGCCATGGTTCTGAGGACTACCACAATCAACATCACCGGCAACACTAGCAGCTGGTGTGTTCATACGCGAGTCGCCGCGAAGCGGTGACAAACCTTCCACTCGACGGCGTTCCGTCTCTTTCATTAGGTCTTGCAGATTTAAGGGATCACTGGGATTTAAGGTGTTTTTTGATGCTCGAACACTTCTTTTTCTTCGGTTTAGAAAACGAGAGCGAGTGAAAGAGTTGTCTCTTTTTGCTCTAAC                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD184997             [                                                                                                                                                                                                                  CGAAGCGGTGACAAACCTTCCACTCGACGGCGTTCCGTCTCTTTCATTAGGTCTTGCAAATTTAAGGGATCACTGGGATTTAAGGTGTATTTTGATGCTCGAACACTTCTTTTTCTTCGGTTTAGAAAACGAGAGCGAGTGAAAGAGTTGTCTCTTTTTGCTCTAACACGATTTATGTGATGTGGCCGAATAGCTAAGTGCGTCAGTAGTGGTATTTGACTTCCAAGTAAACCAGGAGCGTTGGCAAATGAAGTGATTAGTCGAACATCATGCCTCACTCCCGGCGGTCGATTGACTGTAGGGTGTGGATACCAATTTCCGAAATGTCTTG                                                                                                                                            ]
[+] EMBL CD144595             [                                                                                                                                                                                                                                ACCTTCCACTCGACGGCGTTCCGTCTCTTTCATTAGGTCTTGCAAATTTAAGGGATCACTGGGATTTAAGGTGTTTTTTGATGCTCGAACACTTCTTTTTCTTCGGTTTAGAAAACGAGAGCGAGTGAAAGAGTTGTCTCTTTTTGCTCTAACACGATTTATGTGATGTGGCCGAATAGCTAAGTGCGTCAGTAGTGGTATTTGACTTCCAAGTAAACCAGGAGCGTTGGCAAATGAAGTGATTAGTCGAACATCATGCCTCACTCCCGGCGGTCGATTGACTGTAGGGTGTGGATACCAATTTCCGAAATGTCTTGAAGCAACACCTCTCGGCTGAGGGAAGCAGTAAGAGCGAGCAGACACTCTATGCTCACGAGAATAACTTGCAGAACCGCGCAAATGACGCATTAATGCGCAAAATATCAATTAATCCGACGAAGATGGCCGACATTCAAA ]
[-] EMBL CD072801             [                                                                                                                                                                                                                                                                                                                                                                         CTCTTTTTGCTCTAACACGATNTATGTGATGTGGCCGAATAGCTAAGTGCGTCAGTAGTGGTATTTGACTTCCAAGTAAGCCAGGAGCGTTGGCAAATGAAGTGATTAGTCGAACATCATGCTTCACTCCCGGCGGTCGATTGACTGTAGGGTGTGGATACCAATTTCCGAAATGTCTTGAAGCAACACCTCTTGGCTGAGGGAAGCAGTAAGAGCGAGCAGACACTCTATGCTCACGAGAATAACTTGCAGAACCGCGCAAATGACGCATTAATGCGCAAAATATCAATTAATCCGACGAAGATGGCCGACATTCAAAA]


>consensus_9816#1 ACGGTGTAACACTTAGAGGCCCGCATAGGACGTCTACGTATAAGGCGATGAGACTGTCGT TTCGAATGACAATCCAACTTTCGACCGCTGAGACGAGGTGATCCCGAGTCTTTTGACGCG CTTGAAGTCTGAATGCCATGGTTCTGAGGACTACCACAATCAACATCACCGGCAACACTA GCAGCTGGTGTGTTCATACGCGAGTCGCCGCGAAGCGGTGACAAACCTTCCACTCGACGG CGTTCCGTCTCTTTCATTAGGTCTTGCAAATTTAAGGGATCACTGGGATTTAAGGTGTTT TTTGATGCTCGAACACTTCTTTTTCTTCGGTTTAGAAAACGAGAGCGAGTGAAAGAGTTG TCTCTTTTTGCTCTAACACGATTTATGTGATGTGGCCGAATAGCTAAGTGCGTCAGTAGT GGTATTTGACTTCCAAGTAAACCAGGAGCGTTGGCAAATGAAGTGATTAGTCGAACATCA TGCCTCACTCCCGGCGGTCGATTGACTGTAGGGTGTGGATACCAATTTCCGAAATGTCTT GAAGCAACACCTCTCGGCTGAGGGAAGCAGTAAGAGCGAGCAGACACTCTATGCTCACGA GAATAACTTGCAGAACCGCGCAAATGACGCATTAATGCGCAAAATATCAATTAATCCGAC GAAGATGGCCGACATTCAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9816#0      CATTGCGAATGGATGCCGGAGTTGCTCCGTAGGAC-TTTGAACATAGGATTATTTTGCGC 59
consensus_9816#1      ----ACGGTGTAACACTTAGAGGCCCGCATAGGACGTCTACGTATAAGGCGATGAGACTG 56
                           **     *  *        *  * ****** * *    *** *   **    *  

consensus_9816#0      CGGAATGGTTCATTAGGCCTAGGATCTTTGATAGTATCGAAATAAGAAAACCCAAGATCT 119
consensus_9816#1      TCGTTTCGAATGACAATCC---AACTTTCGACCGC--TGAGACGAGGTGATCCCGAGTCT 111
                        *  * *      *  **    *  ** **  *    ** *  **   * **    ***

consensus_9816#0      ACTAGTAAAGGTTCAAGATTTGATGGATTGATTTTCAAAGTTTCATAAATGGATCTGTGT 179
consensus_9816#1      TTTGACGC-GCTTGAAGTCTGAATGCCATGGTTCTGAGGACTACCACAATCAACATCACC 170
                        *      * ** ***  *  ***   ** ** * *    * *   ***  *  *    

consensus_9816#0      TTAGCCGTCAGTCG--GGTCCTCTTATATGATGATTTGGGTTGTGGCTCAAGAATTAGGT 237
consensus_9816#1      GGCAACACTAGCAGCTGGTGTGTTCATACGCGAGTC---GCCGCGAAGCGGTGACAAACC 227
                           *   **  *  ***    * *** *    *    *  * *   *    *  *   

consensus_9816#0      GTCCACCTGGTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCAC 297
consensus_9816#1      TTCCACTCG----ACGGCGTTC-------CGTCTC-----TTTCATTAGGTCTTG----- 266
                       *****  *    * **** *        *****        **** **  *  *     

consensus_9816#0      CATGATTAAGATGAATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTT 357
consensus_9816#1      CAAATTTAAG--GGATC-ACTGGG----ATTTAAGGT----GTTTTTTGATGCTCGAACA 315
                      **   *****  * *** * * **    * * ****      ** * * ** ***     

consensus_9816#0      CATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTTAATTTTTTCATACC 417
consensus_9816#1      CTTC-TTTTTCTTCGGTTTAGAAAACGAG--AGCGAGTGAAAGAGTTGTCTCTTTTTGCT 372
                      * ** **  *  * *  * *  ** * *   *** * *   *   *  * * **  * * 

consensus_9816#0      TGACATTAGATTCTATATCCCAGCGTAATTTCTCTCTTTGCATACTTTGGGCGTTTG--- 474
consensus_9816#1      CTAACACGATTTATGTGATGTGGCCGAATAGCTAAGTGCGT-CAGTAGTGGTATTTGACT 431
                        *       ** * *      **  ***  **   *  *   * *   **  ****   

consensus_9816#0      --CAATTAATTCAGCATCACAGTCAAACGCATCTATTTTCTTGACTTCTGGAAACTTTTC 532
consensus_9816#1      TCCAAGTAAACCAGGAGCGTTGGCAAATGAAGTGATTAGTCGAACATCATGCCTCACTCC 491
                        *** ***  *** * *   * **** * *   ***      ** **  *   *  * *

consensus_9816#0      AAGCACACCAAACGTAAGTGTCCCGTTATGACATCCGTAGTCTGCTACATCTTTACCCAC 592
consensus_9816#1      CGGCGGTCGAT---TGACTGTAGGGTGTGGATACCAATT-TCCGAAATGTCTTGAAGCA- 546
                        **   * *    * * ***   **   ** * *  *  ** *  *  **** *  ** 

consensus_9816#0      GAACCACTCAGGCATTAAATAAGGAAGTCTATCATNTGGATCGCGACGTCTGTAGTAATC 652
consensus_9816#1      ACACCTCTCGGC-------TGAGGGAAGCAGTAAGAGCGAGCAGACACTCTATGCTCACG 599
                        *** *** *        * *** *  *  * *    ** *      *** *  * *  

consensus_9816#0      ACAATAATTTNCCTGTTGTGGGAAGGAAACCCCTGATACAACGACCAACGGTGTAACACT 712
consensus_9816#1      AGAATAACTTGC--------AGAACCGCGCAAATGACGCATTAATGCGCAAAATATCAAT 651
                      * ***** ** *         ***     *   ***  **   *    *    ** ** *

consensus_9816#0      TAGAGGCCCGCATAGGACGTCTACGTATAAGGCGATGAGACTGTCGTTTCGAAATGAAAC 772
consensus_9816#1      TAAT--CCGACGAAGATGGCCGACATTCAAAA---------------------------- 681
                      **    **  *  **   * * ** *  **                              

consensus_9816#0      CGCAACTGCGANNCTCCAATCGAATTNN 800
consensus_9816#1      ----------------------------
                                                  




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)