These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9816#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 800 fasta sequence [CATTGCGAATGGATGCCGGAGTTGCTCCGTAGGACTTTGAACATAGGATTATTTTGCGCCGGAATGGTTCATTAGGCCTAGGATCTTTGATAGTATCGAAATAAGAAAACCCAAGATCTACTAGTAAAGGTTCAAGATTTGATGGATTGATTTTCAAAGTTTCATAAATGGATCTGTGTTTAGCCGTCAGTCGGGTCCTCTTATATGATGATTTGGGTTGTGGCTCAAGAATTAGGTGTCCACCTGGTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGAATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTTCATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTTAATTTTTTCATACCTGACATTAGATTCTATATCCCAGCGTAATTTCTCTCTTTGCATACTTTGGGCGTTTGCAATTAATTCAGCATCACAGTCAAACGCATCTATTTTCTTGACTTCTGGAAACTTT-TCAAGCACACCAAACGTAAGTGTCCCGTTATGACATCCGTAGTCTGCTACATCTTTACCCACGAACCACTCAGGCATTAAATAAGGAAGTCTATCATNTGGATCGCGACGTCTGTAGTAATCACAATAATTTNCCTGTTGTGGGAAGGAAACCCCTGATACAACGACCAACGGTGTAACACTTAGAGGCCCGCATAGGACGTCTACGTATAAGGCGATGAGACTGTCGTTTCGAAATGAAACCGCAACTGCGANNCTCCAATCGAATTNN] [+] EMBL CD186583 [CATTGCGAATGGATGCCGGAGTTGCTCCGTAGGACTTTGAACATAGGATTATTTTGCGCCGGAATGGTTCATTAGGCCTAGGATCTTTGATAGTATCGAAATAAGAAAACCCAAGATCTACTAGTAAAGGTTCAAGACTTGATGGATTGATTTTCAAAGTTTCATAAATGGATCTGTGTTTAGCCGTCAGTCGGGTCCTCTTATATGATGATTTGGGTTGTGGCTCAAGAATTAGGTGTCCACCTGGTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGAATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTTCATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTCTATTTTTTCATACCTGACATT ] [-] EMBL CD142464 [ CCTAGGATCTTTGATAGTATCGAAATAAGAAAACCCAAGATCTACTAGTAAAGGTTCAGGATTTGATGGATTGATTTTCAAAGTTTCATAAATGGATCTGTGTTTAGCCGTCAGTCGGGTCCCCTTATATGATGATTTGGGTTGTGGCTCAAGAATTAGGTGTCCACCTGGTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGAATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACT ] [-] EMBL CD145831 [ TTTGATGGATTGATTTTCAAAGTTTCATAAATGGATCTGTGTTTAGCCGTCAGTCGGGTCCTCTTATATGATGATTTGGGTTGTGGCTCAAGAATTAGGTGTCCACCTGGTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGAATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTTCATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTTAATTTTTTCATACCTGACATTAGATTCTATATCCCAGCGTAATTTCTCTCTTTGCATACTTTGGGCGTTTGCAATTAATTCAGCATCACAGTCAAACGC ] [+] EMBL CD116884 [ GTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGAATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTTCATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTTAATTTTTTCATACCTGACATTAGATTCTATATCCCAGCGTAATTTCTCTCTTTGCATACTTTGGGCGTTTGCAATTAATTCAGCATCACAGTCAAACGCATCTATTTTCTTGACTTCTGGAAACTTT TCAAGCACACCAAACGTAAGTGTCCCGTTATGACATCCGTAGTCTG ] [+] EMBL CD116998 [ GTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGTATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTTCATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTTAATTTTTTCATACCTGACATTAGATTCTATATCCCAGCGTAATTTCTCTCTTTGCATACTTTGGGCGTTTGCAATTAATTCAGCATCACAGTCAAACGCATCTATTTTCTTGACTTCTGGAAACTTT TCAAGCACACCAAACGTAAGTGTCCCGTTATGACATCCGTAGTCTG ] [+] EMBL CD117097 [ GTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCACCATGATTAAGATGTATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTTCATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTTAATTTTTTCATACCTGACATTAGATTCTATATCCCAGCGTAATTTCTCTCTTTGCATACTTTGGGCGTTTGCAATTAATTCAGCATCACAGTCAAACGCATCTATTTTCTTGACTTCTGGAAACTTT TCAAGCACACCAAACGTAAGTGTCCCGTTATGACATCCGTAGTCTG ] [-] EMBL CD090861 [ AAACTTTNTCAAGCACACCAAACGTAAGTGTCCCGTTATGACATCCGTAGTCTGCTACATCTTTACCCACGAACCACTCAGGCATTAAATAAGGAAGTCTATCATNTGGATCGCGACGTCTGTAGTAATCACAATAATTTNCCTGTTGTGGGAAGGAAACCCCTGATACAACGACCAACGGTGTAACACTTAGAGGCCCGCATAGGACGTCTACGTATAAGGCGATGAGACTGTCGTTTCGAAATGAAACCGCAACTGCGANNCTCCAATCGAATTNN] consensusID : consensus_9816#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 681 fasta sequence [ACGGTGTAACACTTAGAGGCCCGCATAGGACGTCTACGTATAAGGCGATGAGACTGTCGTTTCGAATGACAATCCAACTTTCGACCGCTGAGACGAGGTGATCCCGAGTCTTTTGACGCGCTTGAAGTCTGAATGCCATGGTTCTGAGGACTACCACAATCAACATCACCGGCAACACTAGCAGCTGGTGTGTTCATACGCGAGTCGCCGCGAAGCGGTGACAAACCTTCCACTCGACGGCGTTCCGTCTCTTTCATTAGGTCTTGCAAATTTAAGGGATCACTGGGATTTAAGGTGTTTTTTGATGCTCGAACACTTCTTTTTCTTCGGTTTAGAAAACGAGAGCGAGTGAAAGAGTTGTCTCTTTTTGCTCTAACACGATTTATGTGATGTGGCCGAATAGCTAAGTGCGTCAGTAGTGGTATTTGACTTCCAAGTAAACCAGGAGCGTTGGCAAATGAAGTGATTAGTCGAACATCATGCCTCACTCCCGGCGGTCGATTGACTGTAGGGTGTGGATACCAATTTCCGAAATGTCTTGAAGCAACACCTCTCGGCTGAGGGAAGCAGTAAGAGCGAGCAGACACTCTATGCTCACGAGAATAACTTGCAGAACCGCGCAAATGACGCATTAATGCGCAAAATATCAATTAATCCGACGAAGATGGCCGACATTCAAAA] [-] EMBL CD191403 [ACGGTGTAACACTTAGAGGCCCGCATAGGACGTCTACGTATAAGGCGATGAGACTGTCGTTTCGAATGACAATCCAACTTTCGACCGCTGAGACGAGGTGATCCCGAGTCTTTTGACGCGCTTGAAGTCTGAATGCCATGGTTCTGAGGACTACCACAATCAACATCACCGGCAACACTAGCAGCTGGTGTGTTCATACGCGAGTCGCCGCGAAGCGGTGACAAACCTTCCACTCGACGGCGTTCCGTCTCTTTCATTAGGTCTTGCAGATTTAAGGGATCACTGGGATTTAAGGTGTTTTTTGATGCTCGAACACTTCTTTTTCTTCGGTTTAGAAAACGAGAGCGAGTGAAAGAGTTGTCTCTTTTTGCTCTAAC ] [-] EMBL CD184997 [ CGAAGCGGTGACAAACCTTCCACTCGACGGCGTTCCGTCTCTTTCATTAGGTCTTGCAAATTTAAGGGATCACTGGGATTTAAGGTGTATTTTGATGCTCGAACACTTCTTTTTCTTCGGTTTAGAAAACGAGAGCGAGTGAAAGAGTTGTCTCTTTTTGCTCTAACACGATTTATGTGATGTGGCCGAATAGCTAAGTGCGTCAGTAGTGGTATTTGACTTCCAAGTAAACCAGGAGCGTTGGCAAATGAAGTGATTAGTCGAACATCATGCCTCACTCCCGGCGGTCGATTGACTGTAGGGTGTGGATACCAATTTCCGAAATGTCTTG ] [+] EMBL CD144595 [ ACCTTCCACTCGACGGCGTTCCGTCTCTTTCATTAGGTCTTGCAAATTTAAGGGATCACTGGGATTTAAGGTGTTTTTTGATGCTCGAACACTTCTTTTTCTTCGGTTTAGAAAACGAGAGCGAGTGAAAGAGTTGTCTCTTTTTGCTCTAACACGATTTATGTGATGTGGCCGAATAGCTAAGTGCGTCAGTAGTGGTATTTGACTTCCAAGTAAACCAGGAGCGTTGGCAAATGAAGTGATTAGTCGAACATCATGCCTCACTCCCGGCGGTCGATTGACTGTAGGGTGTGGATACCAATTTCCGAAATGTCTTGAAGCAACACCTCTCGGCTGAGGGAAGCAGTAAGAGCGAGCAGACACTCTATGCTCACGAGAATAACTTGCAGAACCGCGCAAATGACGCATTAATGCGCAAAATATCAATTAATCCGACGAAGATGGCCGACATTCAAA ] [-] EMBL CD072801 [ CTCTTTTTGCTCTAACACGATNTATGTGATGTGGCCGAATAGCTAAGTGCGTCAGTAGTGGTATTTGACTTCCAAGTAAGCCAGGAGCGTTGGCAAATGAAGTGATTAGTCGAACATCATGCTTCACTCCCGGCGGTCGATTGACTGTAGGGTGTGGATACCAATTTCCGAAATGTCTTGAAGCAACACCTCTTGGCTGAGGGAAGCAGTAAGAGCGAGCAGACACTCTATGCTCACGAGAATAACTTGCAGAACCGCGCAAATGACGCATTAATGCGCAAAATATCAATTAATCCGACGAAGATGGCCGACATTCAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9816#0 CATTGCGAATGGATGCCGGAGTTGCTCCGTAGGAC-TTTGAACATAGGATTATTTTGCGC 59 consensus_9816#1 ----ACGGTGTAACACTTAGAGGCCCGCATAGGACGTCTACGTATAAGGCGATGAGACTG 56 ** * * * * ****** * * *** * ** * consensus_9816#0 CGGAATGGTTCATTAGGCCTAGGATCTTTGATAGTATCGAAATAAGAAAACCCAAGATCT 119 consensus_9816#1 TCGTTTCGAATGACAATCC---AACTTTCGACCGC--TGAGACGAGGTGATCCCGAGTCT 111 * * * * ** * ** ** * ** * ** * ** *** consensus_9816#0 ACTAGTAAAGGTTCAAGATTTGATGGATTGATTTTCAAAGTTTCATAAATGGATCTGTGT 179 consensus_9816#1 TTTGACGC-GCTTGAAGTCTGAATGCCATGGTTCTGAGGACTACCACAATCAACATCACC 170 * * ** *** * *** ** ** * * * * *** * * consensus_9816#0 TTAGCCGTCAGTCG--GGTCCTCTTATATGATGATTTGGGTTGTGGCTCAAGAATTAGGT 237 consensus_9816#1 GGCAACACTAGCAGCTGGTGTGTTCATACGCGAGTC---GCCGCGAAGCGGTGACAAACC 227 * ** * *** * *** * * * * * * * * consensus_9816#0 GTCCACCTGGTTTAAGGCGGTTGAAGGCACGTCTAAAGAACCTCATAAGACCAGGATCAC 297 consensus_9816#1 TTCCACTCG----ACGGCGTTC-------CGTCTC-----TTTCATTAGGTCTTG----- 266 ***** * * **** * ***** **** ** * * consensus_9816#0 CATGATTAAGATGAATCCATTTGGTAACACTGAAGGCCATGATTGTATCATACTCAGGTT 357 consensus_9816#1 CAAATTTAAG--GGATC-ACTGGG----ATTTAAGGT----GTTTTTTGATGCTCGAACA 315 ** ***** * *** * * ** * * **** ** * * ** *** consensus_9816#0 CATCATTCGTAGTTGACTCATCAATCCAATTAGCAACTTGGAAGTTAATTTTTTCATACC 417 consensus_9816#1 CTTC-TTTTTCTTCGGTTTAGAAAACGAG--AGCGAGTGAAAGAGTTGTCTCTTTTTGCT 372 * ** ** * * * * * ** * * *** * * * * * * ** * * consensus_9816#0 TGACATTAGATTCTATATCCCAGCGTAATTTCTCTCTTTGCATACTTTGGGCGTTTG--- 474 consensus_9816#1 CTAACACGATTTATGTGATGTGGCCGAATAGCTAAGTGCGT-CAGTAGTGGTATTTGACT 431 * ** * * ** *** ** * * * * ** **** consensus_9816#0 --CAATTAATTCAGCATCACAGTCAAACGCATCTATTTTCTTGACTTCTGGAAACTTTTC 532 consensus_9816#1 TCCAAGTAAACCAGGAGCGTTGGCAAATGAAGTGATTAGTCGAACATCATGCCTCACTCC 491 *** *** *** * * * **** * * *** ** ** * * * * consensus_9816#0 AAGCACACCAAACGTAAGTGTCCCGTTATGACATCCGTAGTCTGCTACATCTTTACCCAC 592 consensus_9816#1 CGGCGGTCGAT---TGACTGTAGGGTGTGGATACCAATT-TCCGAAATGTCTTGAAGCA- 546 ** * * * * *** ** ** * * * ** * * **** * ** consensus_9816#0 GAACCACTCAGGCATTAAATAAGGAAGTCTATCATNTGGATCGCGACGTCTGTAGTAATC 652 consensus_9816#1 ACACCTCTCGGC-------TGAGGGAAGCAGTAAGAGCGAGCAGACACTCTATGCTCACG 599 *** *** * * *** * * * * ** * *** * * * consensus_9816#0 ACAATAATTTNCCTGTTGTGGGAAGGAAACCCCTGATACAACGACCAACGGTGTAACACT 712 consensus_9816#1 AGAATAACTTGC--------AGAACCGCGCAAATGACGCATTAATGCGCAAAATATCAAT 651 * ***** ** * *** * *** ** * * ** ** * consensus_9816#0 TAGAGGCCCGCATAGGACGTCTACGTATAAGGCGATGAGACTGTCGTTTCGAAATGAAAC 772 consensus_9816#1 TAAT--CCGACGAAGATGGCCGACATTCAAAA---------------------------- 681 ** ** * ** * * ** * ** consensus_9816#0 CGCAACTGCGANNCTCCAATCGAATTNN 800 consensus_9816#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||